Guide to the Human Genome
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Name: LOC100292294 Sequence: fasta or formatted (422aa) NCBI GI: 239754026
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         44           2
 C cysteine            2.4         10           1
 D aspartate           4.3         18           1
 E glutamate           5.0         21           2
 F phenylalanine       3.3         14           1
 G glycine            11.8         50           3
 H histidine           5.2         22           1
 I isoleucine          2.1          9           1
 K lysine              1.2          5           1
 L leucine            13.5         57           3
 M methionine          0.9          4           1
 N asparagine          1.4          6           1
 P proline             9.5         40           3
 Q glutamine           4.0         17           2
 R arginine            8.5         36           2
 S serine              7.1         30           2
 T threonine           2.4         10           1
 V valine              4.7         20           2
 W tryptophan          0.9          4           1
 Y tyrosine            1.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289924          1.000   PREDICTED: hypothetical protein XP_002346722 
LOC100287776          0.998   PREDICTED: hypothetical protein XP_002342571 
TERT                  0.014   telomerase reverse transcriptase isoform 2 
TERT                  0.014   telomerase reverse transcriptase isoform 1 
LOC100129571          0.012   PREDICTED: similar to hCG1646049 
LOC100129571          0.012   PREDICTED: similar to hCG1646049 
LOC100129571          0.012   PREDICTED: similar to hCG1646049 
ZNF716                0.012   PREDICTED: zinc finger protein 716 
LOC728317             0.009   PREDICTED: hypothetical protein 
LOC728317             0.009   PREDICTED: hypothetical protein 
LOC728317             0.009   PREDICTED: hypothetical protein 
LOC728307             0.009   PREDICTED: hypothetical protein 
LOC100292243          0.009   PREDICTED: hypothetical protein 
LOC100289893          0.009   PREDICTED: hypothetical protein XP_002346438 
LOC100289331          0.009   PREDICTED: hypothetical protein XP_002342134 
ZNF579                0.009   zinc finger protein 579 
HCN1                  0.008   hyperpolarization activated cyclic nucleotide-gated...
LOC100293795          0.008   PREDICTED: hypothetical protein 
LOC100287397          0.008   PREDICTED: hypothetical protein 
LOC100287397          0.008   PREDICTED: hypothetical protein XP_002343164 
CPA5                  0.008   carboxypeptidase A5 isoform 2 
LOC100128559          0.007   PREDICTED: hypothetical protein 
LOC100128559          0.007   PREDICTED: hypothetical protein 
LOC100128559          0.007   PREDICTED: hypothetical protein 
PCGF2                 0.007   ring finger protein 110 
LOC728940             0.006   PREDICTED: hypothetical protein 
LOC100134102          0.006   PREDICTED: hypothetical protein 
LOC728940             0.006   PREDICTED: hypothetical protein 
LOC728940             0.006   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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