Guide to the Human Genome
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Search of human proteins with 239747208

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747208 PREDICTED: hypothetical protein [Homo sapiens]
         (249 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752655 PREDICTED: hypothetical protein [Homo sapiens]           530   e-151
gi|239747208 PREDICTED: hypothetical protein [Homo sapiens]           530   e-151
gi|239740999 PREDICTED: hypothetical protein [Homo sapiens]           528   e-150
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap...   106   2e-23
gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo sap...   106   2e-23
gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo sap...   106   2e-23
gi|153252110 ring finger protein 183 [Homo sapiens]                    75   7e-14
gi|27436877 tripartite motif-containing 59 [Homo sapiens]              53   3e-07
gi|30794216 tripartite motif-containing 56 [Homo sapiens]              49   3e-06
gi|32454739 tripartite motif-containing 3 [Homo sapiens]               49   4e-06
gi|32454737 tripartite motif-containing 3 [Homo sapiens]               49   4e-06
gi|27734873 ring finger protein 152 [Homo sapiens]                     49   4e-06
gi|40255283 NHL repeat containing 1 [Homo sapiens]                     49   5e-06
gi|119220603 ring finger protein 208 [Homo sapiens]                    49   5e-06
gi|22749455 ring finger protein 182 [Homo sapiens]                     48   7e-06
gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens]    47   1e-05
gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens]    47   1e-05
gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo s...    47   2e-05
gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo sa...    47   2e-05
gi|226442736 ring finger protein 222 [Homo sapiens]                    46   3e-05
gi|239756718 PREDICTED: ring finger protein 222 [Homo sapiens]         46   3e-05
gi|239751213 PREDICTED: ring finger protein 222 [Homo sapiens]         46   3e-05
gi|239745703 PREDICTED: ring finger protein 222 [Homo sapiens]         46   3e-05
gi|9506663 ring finger protein 186 [Homo sapiens]                      46   3e-05
gi|153791514 tripartite motif-containing 32 [Homo sapiens]             45   5e-05
gi|153792582 tripartite motif-containing 32 [Homo sapiens]             45   5e-05
gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens]     45   8e-05
gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens]     45   8e-05
gi|74027251 tripartite motif-containing 33 protein isoform beta ...    44   1e-04
gi|74027249 tripartite motif-containing 33 protein isoform alpha...    44   1e-04

>gi|239752655 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 249

 Score =  530 bits (1365), Expect = e-151
 Identities = 249/249 (100%), Positives = 249/249 (100%)

Query: 1   MSSGQQVWHTAVPPPRRSSSIASMPRSPSSAGSPRSPGTPGSERVASPLECSICFSGYDN 60
           MSSGQQVWHTAVPPPRRSSSIASMPRSPSSAGSPRSPGTPGSERVASPLECSICFSGYDN
Sbjct: 1   MSSGQQVWHTAVPPPRRSSSIASMPRSPSSAGSPRSPGTPGSERVASPLECSICFSGYDN 60

Query: 61  IFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQ 120
           IFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQ
Sbjct: 61  IFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQ 120

Query: 121 LQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPVPARDPAPR 180
           LQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPVPARDPAPR
Sbjct: 121 LQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPVPARDPAPR 180

Query: 181 RGRLARCWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTAA 240
           RGRLARCWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTAA
Sbjct: 181 RGRLARCWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTAA 240

Query: 241 SPLGPLTDN 249
           SPLGPLTDN
Sbjct: 241 SPLGPLTDN 249


>gi|239747208 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 249

 Score =  530 bits (1365), Expect = e-151
 Identities = 249/249 (100%), Positives = 249/249 (100%)

Query: 1   MSSGQQVWHTAVPPPRRSSSIASMPRSPSSAGSPRSPGTPGSERVASPLECSICFSGYDN 60
           MSSGQQVWHTAVPPPRRSSSIASMPRSPSSAGSPRSPGTPGSERVASPLECSICFSGYDN
Sbjct: 1   MSSGQQVWHTAVPPPRRSSSIASMPRSPSSAGSPRSPGTPGSERVASPLECSICFSGYDN 60

Query: 61  IFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQ 120
           IFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQ
Sbjct: 61  IFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQ 120

Query: 121 LQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPVPARDPAPR 180
           LQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPVPARDPAPR
Sbjct: 121 LQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPVPARDPAPR 180

Query: 181 RGRLARCWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTAA 240
           RGRLARCWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTAA
Sbjct: 181 RGRLARCWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTAA 240

Query: 241 SPLGPLTDN 249
           SPLGPLTDN
Sbjct: 241 SPLGPLTDN 249


>gi|239740999 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 249

 Score =  528 bits (1361), Expect = e-150
 Identities = 248/249 (99%), Positives = 248/249 (99%)

Query: 1   MSSGQQVWHTAVPPPRRSSSIASMPRSPSSAGSPRSPGTPGSERVASPLECSICFSGYDN 60
           MSSGQQVWHTAVPPPRRSSSIASMPRSPSSAGSPRSPGTPGSERVASPLECSICFSGYDN
Sbjct: 1   MSSGQQVWHTAVPPPRRSSSIASMPRSPSSAGSPRSPGTPGSERVASPLECSICFSGYDN 60

Query: 61  IFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQ 120
           IFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQ
Sbjct: 61  IFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQ 120

Query: 121 LQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPVPARDPAPR 180
           LQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPP PARDPAPR
Sbjct: 121 LQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPAPARDPAPR 180

Query: 181 RGRLARCWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTAA 240
           RGRLARCWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTAA
Sbjct: 181 RGRLARCWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTAA 240

Query: 241 SPLGPLTDN 249
           SPLGPLTDN
Sbjct: 241 SPLGPLTDN 249


>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
           sapiens]
          Length = 329

 Score =  106 bits (264), Expect = 2e-23
 Identities = 86/243 (35%), Positives = 106/243 (43%), Gaps = 40/243 (16%)

Query: 23  SMPRSPSSAGSPRSP---------------GTPGSERV---ASPLECSICFSGYDNIFKT 64
           S P SP S  +PRSP               G+PGS  +   ASP+EC IC S +D +FK 
Sbjct: 18  SGPSSPGSLSAPRSPSRGEDQEEEEEEEGDGSPGSGPILPPASPVECLICVSSFDGVFKL 77

Query: 65  PKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPP-AGAPALCTSRQL-- 121
           PK L C HVFCLECLARL+ A      GG AV CP CR PT + P  G PAL T   L  
Sbjct: 78  PKRLDCGHVFCLECLARLSLAT---AGGGNAVACPVCRAPTRLAPRRGLPALPTQSGLLP 134

Query: 122 -QARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPVPARDPAPR 180
             AR P   +           L  +P P  PG            + P  PP+    P  R
Sbjct: 135 RDARAPPSRQGSVRFDRRRGLLYLRPPPPPPGPRK-------ARAPPPPPPLRLGRPLSR 187

Query: 181 RGRLAR-CWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTA 239
           R  LA   W          LV+A L++      + +  A  +G       PPRP   + A
Sbjct: 188 RLSLASPAWVFNAAVALAVLVAAGLVVSGVYIFFLIPHATSSG-------PPRPQLVALA 240

Query: 240 ASP 242
            +P
Sbjct: 241 PAP 243


>gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo
           sapiens]
          Length = 329

 Score =  106 bits (264), Expect = 2e-23
 Identities = 86/243 (35%), Positives = 106/243 (43%), Gaps = 40/243 (16%)

Query: 23  SMPRSPSSAGSPRSP---------------GTPGSERV---ASPLECSICFSGYDNIFKT 64
           S P SP S  +PRSP               G+PGS  +   ASP+EC IC S +D +FK 
Sbjct: 18  SGPSSPGSLSAPRSPSRGEDQEEEEEEEGDGSPGSGPILPPASPVECLICVSSFDGVFKL 77

Query: 65  PKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPP-AGAPALCTSRQL-- 121
           PK L C HVFCLECLARL+ A      GG AV CP CR PT + P  G PAL T   L  
Sbjct: 78  PKRLDCGHVFCLECLARLSLAT---AGGGNAVACPVCRAPTRLAPRRGLPALPTQSGLLP 134

Query: 122 -QARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPVPARDPAPR 180
             AR P   +           L  +P P  PG            + P  PP+    P  R
Sbjct: 135 RDARAPPSRQGSVRFDRRRGLLYLRPPPPPPGPRK-------ARAPPPPPPLRLGRPLSR 187

Query: 181 RGRLAR-CWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTA 239
           R  LA   W          LV+A L++      + +  A  +G       PPRP   + A
Sbjct: 188 RLSLASPAWVFNAAVALAVLVAAGLVVSGVYIFFLIPHATSSG-------PPRPQLVALA 240

Query: 240 ASP 242
            +P
Sbjct: 241 PAP 243


>gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo
           sapiens]
          Length = 329

 Score =  106 bits (264), Expect = 2e-23
 Identities = 86/243 (35%), Positives = 106/243 (43%), Gaps = 40/243 (16%)

Query: 23  SMPRSPSSAGSPRSP---------------GTPGSERV---ASPLECSICFSGYDNIFKT 64
           S P SP S  +PRSP               G+PGS  +   ASP+EC IC S +D +FK 
Sbjct: 18  SGPSSPGSLSAPRSPSRGEDQEEEEEEEGDGSPGSGPILPPASPVECLICVSSFDGVFKL 77

Query: 65  PKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPP-AGAPALCTSRQL-- 121
           PK L C HVFCLECLARL+ A      GG AV CP CR PT + P  G PAL T   L  
Sbjct: 78  PKRLDCGHVFCLECLARLSLAT---AGGGNAVACPVCRAPTRLAPRRGLPALPTQSGLLP 134

Query: 122 -QARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPVPARDPAPR 180
             AR P   +           L  +P P  PG            + P  PP+    P  R
Sbjct: 135 RDARAPPSRQGSVRFDRRRGLLYLRPPPPPPGPRK-------ARAPPPPPPLRLGRPLSR 187

Query: 181 RGRLAR-CWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTA 239
           R  LA   W          LV+A L++      + +  A  +G       PPRP   + A
Sbjct: 188 RLSLASPAWVFNAAVALAVLVAAGLVVSGVYIFFLIPHATSSG-------PPRPQLVALA 240

Query: 240 ASP 242
            +P
Sbjct: 241 PAP 243


>gi|153252110 ring finger protein 183 [Homo sapiens]
          Length = 192

 Score = 74.7 bits (182), Expect = 7e-14
 Identities = 61/184 (33%), Positives = 84/184 (45%), Gaps = 26/184 (14%)

Query: 50  ECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPP 109
           EC +C++ ++N F TPK L C H FC+ECLA L+   P  R     + CP CRQPT V  
Sbjct: 12  ECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARR----RLLCPLCRQPT-VLA 66

Query: 110 AGAPALCTSRQLQARMPAHLRRE-EPVWLEGTKLCCQPLPTTPG--REPGFVCVDVGLSK 166
           +G P   T       M A LR E   V LEG +LC +  P +    R+P    +D+G  +
Sbjct: 67  SGQPV--TDLPTDTAMLALLRLEPHHVILEGHQLCLKDQPKSRYFLRQPQVYTLDLG-PQ 123

Query: 167 PAEPPVPARDPA----------PRRGRLARCWA----RCRDWRRMALVSALLLMLFCVAL 212
           P     P  D A          P    L  C+     R   +    ++S  LL++F +  
Sbjct: 124 PGGQTGPPPDTASATVSTPILIPSHHSLRECFRNPQFRIFAYLMAVILSVTLLLIFSI-F 182

Query: 213 WPVQ 216
           W  Q
Sbjct: 183 WTKQ 186


>gi|27436877 tripartite motif-containing 59 [Homo sapiens]
          Length = 403

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 49  LECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQP---VGRPGGEAVPCPFCRQPT 105
           L C IC+S    IF+ P+ L C+H FC  CL  +  A     + RP    + CP CR  T
Sbjct: 8   LTCPICYS----IFEDPRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCPNCRSIT 63

Query: 106 AVPPAGAPALCTSRQLQARMPAHLRREEP 134
            + P G  +L  +  L+A +  + + + P
Sbjct: 64  EIAPTGIESLPVNFALRAIIEKYQQEDHP 92


>gi|30794216 tripartite motif-containing 56 [Homo sapiens]
          Length = 755

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 12/70 (17%)

Query: 49  LECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVP 108
           L C IC        + PK L C H +C +CLA+LA         G  V CP CR+   VP
Sbjct: 19  LACKICLEQ----LRAPKTLPCLHTYCQDCLAQLA--------DGGRVRCPECRETVPVP 66

Query: 109 PAGAPALCTS 118
           P G  +  T+
Sbjct: 67  PEGVASFKTN 76


>gi|32454739 tripartite motif-containing 3 [Homo sapiens]
          Length = 744

 Score = 48.9 bits (115), Expect = 4e-06
 Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 36  SPGTPGSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEA 95
           SPG          L CSIC   Y    + PK L C H FC  CL     AQ +       
Sbjct: 7   SPGPEVQPMDKQFLVCSICLDRY----QCPKVLPCLHTFCERCLQNYIPAQSL------T 56

Query: 96  VPCPFCRQPTAVPPAGAPALCTSRQLQARMPA 127
           + CP CRQ + +P  G  AL  +  + + M A
Sbjct: 57  LSCPVCRQTSILPEQGVSALQNNFFISSLMEA 88


>gi|32454737 tripartite motif-containing 3 [Homo sapiens]
          Length = 744

 Score = 48.9 bits (115), Expect = 4e-06
 Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 36  SPGTPGSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEA 95
           SPG          L CSIC   Y    + PK L C H FC  CL     AQ +       
Sbjct: 7   SPGPEVQPMDKQFLVCSICLDRY----QCPKVLPCLHTFCERCLQNYIPAQSL------T 56

Query: 96  VPCPFCRQPTAVPPAGAPALCTSRQLQARMPA 127
           + CP CRQ + +P  G  AL  +  + + M A
Sbjct: 57  LSCPVCRQTSILPEQGVSALQNNFFISSLMEA 88


>gi|27734873 ring finger protein 152 [Homo sapiens]
          Length = 203

 Score = 48.9 bits (115), Expect = 4e-06
 Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 10/119 (8%)

Query: 47  SPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTA 106
           S LEC ICF+ Y    + PK L C H  C  CL ++  +Q       + V CP+CR  T 
Sbjct: 8   SLLECQICFNYYSPR-RRPKLLDCKHTCCSVCLQQMRTSQ-------KDVRCPWCRGVTK 59

Query: 107 VPPAGAPALCTS--RQLQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVG 163
           +PP  + +        L      H     PV+++     C  LP    +E   +  D+G
Sbjct: 60  LPPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMG 118


>gi|40255283 NHL repeat containing 1 [Homo sapiens]
          Length = 395

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 7/62 (11%)

Query: 43  ERVASPLECSICFSGYDNIF-KTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFC 101
           E   S LEC +CF  + +   + P+ LSC HV CL C+A LA       P   A+ CPFC
Sbjct: 18  EAEISLLECKVCFEKFGHRQQRRPRNLSCGHVVCLACVAALA------HPRTLALECPFC 71

Query: 102 RQ 103
           R+
Sbjct: 72  RR 73


>gi|119220603 ring finger protein 208 [Homo sapiens]
          Length = 261

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 39/135 (28%), Positives = 54/135 (40%), Gaps = 26/135 (19%)

Query: 9   HTAVPP--PRRSSSIASMPR--------------SPSSAGSPRSPGTPGSERVASPLECS 52
           HT   P  PR+ SS    PR               P  + S  S    G      PLEC 
Sbjct: 90  HTPPLPRRPRKGSSELGFPRVAPEDEVIVNQYVIRPGPSASAASSAAAGE-----PLECP 144

Query: 53  ICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAV-PPAG 111
            C   Y+   + P+ LSC H  C +CL  L  + P  +     + CP CR+ T +    G
Sbjct: 145 TCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYK----FISCPTCRRETVLFTDYG 200

Query: 112 APALCTSRQLQARMP 126
             AL  +  + +R+P
Sbjct: 201 LAALAVNTSILSRLP 215


>gi|22749455 ring finger protein 182 [Homo sapiens]
          Length = 247

 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 37  PGTPGSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAV 96
           P      + +  LEC IC++ Y+   + PK L C H  C +CL ++      G      +
Sbjct: 6   PEDTAESQASDELECKICYNRYNLKQRKPKVLECCHRVCAKCLYKII---DFGDSPQGVI 62

Query: 97  PCPFCRQPTAVP 108
            CPFCR  T +P
Sbjct: 63  VCPFCRFETCLP 74


>gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens]
          Length = 744

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 10/67 (14%)

Query: 49  LECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVP 108
           L CSIC   Y N    PK L C H FC  CL     A  +       + CP CRQ + +P
Sbjct: 21  LICSICLERYKN----PKVLPCLHTFCERCLQNYIPAHSL------TLSCPVCRQTSILP 70

Query: 109 PAGAPAL 115
             G  AL
Sbjct: 71  EKGVAAL 77


>gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens]
          Length = 771

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 10/67 (14%)

Query: 49  LECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVP 108
           L CSIC   Y N    PK L C H FC  CL     A  +       + CP CRQ + +P
Sbjct: 48  LICSICLERYKN----PKVLPCLHTFCERCLQNYIPAHSL------TLSCPVCRQTSILP 97

Query: 109 PAGAPAL 115
             G  AL
Sbjct: 98  EKGVAAL 104


>gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo
           sapiens]
          Length = 500

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 11/78 (14%)

Query: 42  SERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFC 101
           +E +   L C IC     + F+ P  + C H FC  CL R  A      PGG   PCP C
Sbjct: 3   AEDIQEELTCPICL----DYFQDPVSIECGHNFCRGCLHRNWA------PGGGPFPCPEC 52

Query: 102 RQPTAVPPAGAPALCTSR 119
           R P+A P A  P    +R
Sbjct: 53  RHPSA-PAALRPNWALAR 69


>gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo
           sapiens]
          Length = 474

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 11/78 (14%)

Query: 42  SERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFC 101
           +E +   L C IC     + F+ P  + C H FC  CL R  A      PGG   PCP C
Sbjct: 3   AEDIQEELTCPICL----DYFQDPVSIECGHNFCRGCLHRNWA------PGGGPFPCPEC 52

Query: 102 RQPTAVPPAGAPALCTSR 119
           R P+A P A  P    +R
Sbjct: 53  RHPSA-PAALRPNWALAR 69


>gi|226442736 ring finger protein 222 [Homo sapiens]
          Length = 220

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 41  GSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPF 100
           G  + +S  EC +C+  + ++    + LSC HVFC +CL +   +  V       + CP 
Sbjct: 4   GESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPI 63

Query: 101 CRQPT 105
           CR  T
Sbjct: 64  CRYVT 68


>gi|239756718 PREDICTED: ring finger protein 222 [Homo sapiens]
          Length = 220

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 41  GSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPF 100
           G  + +S  EC +C+  + ++    + LSC HVFC +CL +   +  V       + CP 
Sbjct: 4   GESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPI 63

Query: 101 CRQPT 105
           CR  T
Sbjct: 64  CRYVT 68


>gi|239751213 PREDICTED: ring finger protein 222 [Homo sapiens]
          Length = 220

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 41  GSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPF 100
           G  + +S  EC +C+  + ++    + LSC HVFC +CL +   +  V       + CP 
Sbjct: 4   GESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPI 63

Query: 101 CRQPT 105
           CR  T
Sbjct: 64  CRYVT 68


>gi|239745703 PREDICTED: ring finger protein 222 [Homo sapiens]
          Length = 220

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 41  GSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPF 100
           G  + +S  EC +C+  + ++    + LSC HVFC +CL +   +  V       + CP 
Sbjct: 4   GESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPI 63

Query: 101 CRQPT 105
           CR  T
Sbjct: 64  CRYVT 68


>gi|9506663 ring finger protein 186 [Homo sapiens]
          Length = 227

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 13/101 (12%)

Query: 28  PSSAGSPRS-----PGTPGSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARL 82
           P SAG+  +     P    S      LEC +C   Y +  + PK L+C H FC  CL  L
Sbjct: 12  PISAGATTTTTAVAPAGGHSGSTECDLECLVCREPY-SCPRLPKLLACQHAFCAICLKLL 70

Query: 83  AAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQLQA 123
              Q        ++ CP CR+ TAVP      +C+ R  +A
Sbjct: 71  LCVQ----DNTWSITCPLCRKVTAVP---GGLICSLRDHEA 104


>gi|153791514 tripartite motif-containing 32 [Homo sapiens]
          Length = 653

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 38/139 (27%), Positives = 53/139 (38%), Gaps = 13/139 (9%)

Query: 49  LECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVP 108
           LEC IC   +      PK L C H  C +CL +L A+   G      V CPFC + T + 
Sbjct: 18  LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSING------VRCPFCSKITRIT 71

Query: 109 PAGAPALCTSRQLQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFV----CVDVGL 164
              +    T      ++       E V L   + C + LP    R  G V    C +   
Sbjct: 72  ---SLTQLTDNLTVLKIIDTAGLSEAVGLLMCRSCGRRLPRQFCRSCGLVLCEPCREADH 128

Query: 165 SKPAEPPVPARDPAPRRGR 183
             P    +P ++ A  R R
Sbjct: 129 QPPGHCTLPVKEAAEERRR 147


>gi|153792582 tripartite motif-containing 32 [Homo sapiens]
          Length = 653

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 38/139 (27%), Positives = 53/139 (38%), Gaps = 13/139 (9%)

Query: 49  LECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVP 108
           LEC IC   +      PK L C H  C +CL +L A+   G      V CPFC + T + 
Sbjct: 18  LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSING------VRCPFCSKITRIT 71

Query: 109 PAGAPALCTSRQLQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFV----CVDVGL 164
              +    T      ++       E V L   + C + LP    R  G V    C +   
Sbjct: 72  ---SLTQLTDNLTVLKIIDTAGLSEAVGLLMCRSCGRRLPRQFCRSCGLVLCEPCREADH 128

Query: 165 SKPAEPPVPARDPAPRRGR 183
             P    +P ++ A  R R
Sbjct: 129 QPPGHCTLPVKEAAEERRR 147


>gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens]
          Length = 511

 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 22/107 (20%)

Query: 29  SSAGSPRSPGTPGSERVASPLE------CSICFSGYDNIFKTPKELSCTHVFCLECLARL 82
           ++ G    PGT G+E +A   E      CSIC      +F+ P  + C H FC  C+ R 
Sbjct: 2   AAVGPRTGPGT-GAEALALAAELQGEATCSICLE----LFREPVSVECGHSFCRACIGRC 56

Query: 83  AAAQPVGRPGGEA------VPCPFCRQPTAVPPAGAPALCTSRQLQA 123
                 G  G         +PCP CR+     PA    L  +RQL A
Sbjct: 57  WERPGAGSVGAATRAPPFPLPCPQCRE-----PARPSQLRPNRQLAA 98


>gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens]
          Length = 221

 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 22/107 (20%)

Query: 29  SSAGSPRSPGTPGSERVASPLE------CSICFSGYDNIFKTPKELSCTHVFCLECLARL 82
           ++ G    PGT G+E +A   E      CSIC      +F+ P  + C H FC  C+ R 
Sbjct: 2   AAVGPRTGPGT-GAEALALAAELQGEATCSICLE----LFREPVSVECGHSFCRACIGRC 56

Query: 83  AAAQPVGRPGGEA------VPCPFCRQPTAVPPAGAPALCTSRQLQA 123
                 G  G         +PCP CR+     PA    L  +RQL A
Sbjct: 57  WERPGAGSVGAATRAPPFPLPCPQCRE-----PARPSQLRPNRQLAA 98


>gi|74027251 tripartite motif-containing 33 protein isoform beta
           [Homo sapiens]
          Length = 1110

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 34/92 (36%), Positives = 40/92 (43%), Gaps = 17/92 (18%)

Query: 22  ASMPRSPSSAGSPRSPGTPGSERVASPLE-CSICFSGYDNIFKT-PKELSCTHVFCLECL 79
           AS P    SAG P  PG P     AS L+ C++C     +  +  PK L C H FCL CL
Sbjct: 102 ASAPAPGPSAGPP--PGPP-----ASLLDTCAVCQQSLQSRREAEPKLLPCLHSFCLRCL 154

Query: 80  ARLAAAQPVGRPGGE--------AVPCPFCRQ 103
                   V  PGG          + CP CRQ
Sbjct: 155 PEPERQLSVPIPGGSNGDIQQVGVIRCPVCRQ 186


>gi|74027249 tripartite motif-containing 33 protein isoform alpha
           [Homo sapiens]
          Length = 1127

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 34/92 (36%), Positives = 40/92 (43%), Gaps = 17/92 (18%)

Query: 22  ASMPRSPSSAGSPRSPGTPGSERVASPLE-CSICFSGYDNIFKT-PKELSCTHVFCLECL 79
           AS P    SAG P  PG P     AS L+ C++C     +  +  PK L C H FCL CL
Sbjct: 102 ASAPAPGPSAGPP--PGPP-----ASLLDTCAVCQQSLQSRREAEPKLLPCLHSFCLRCL 154

Query: 80  ARLAAAQPVGRPGGE--------AVPCPFCRQ 103
                   V  PGG          + CP CRQ
Sbjct: 155 PEPERQLSVPIPGGSNGDIQQVGVIRCPVCRQ 186


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,358,673
Number of Sequences: 37866
Number of extensions: 874792
Number of successful extensions: 7939
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 341
Number of HSP's that attempted gapping in prelim test: 7202
Number of HSP's gapped (non-prelim): 996
length of query: 249
length of database: 18,247,518
effective HSP length: 100
effective length of query: 149
effective length of database: 14,460,918
effective search space: 2154676782
effective search space used: 2154676782
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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