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Search of human proteins with 239746934
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746934 PREDICTED: similar to translocase of inner
mitochondrial membrane 8 homolog B [Homo sapiens]
(116 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752419 PREDICTED: similar to translocase of inner mitochon... 243 3e-65
gi|239746934 PREDICTED: similar to translocase of inner mitochon... 243 3e-65
gi|239757907 PREDICTED: similar to translocase of inner mitochon... 228 6e-61
gi|6912712 translocase of inner mitochondrial membrane 8 homolog... 159 4e-40
gi|4758152 translocase of inner mitochondrial membrane 8 homolog... 79 6e-16
gi|11024700 translocase of inner mitochondrial membrane 13 [Homo... 42 1e-04
gi|225543159 translocase of inner mitochondrial membrane 8 homol... 39 9e-04
gi|6912382 fractured callus expressed transcript 1 [Homo sapiens] 31 0.24
gi|13129078 alveolar soft part sarcoma chromosome region, candid... 28 1.2
gi|239745140 PREDICTED: similar to hect domain and RLD 2 [Homo s... 28 2.0
gi|113425121 PREDICTED: similar to Golgin subfamily A member 8-l... 27 2.7
gi|113425145 PREDICTED: similar to Golgin subfamily A member 8-l... 27 3.5
gi|113425137 PREDICTED: similar to Golgin subfamily A member 8-l... 27 3.5
gi|47132577 AMP-activated protein kinase, non-catalytic gamma-3 ... 27 3.5
gi|8394456 toll-like receptor 9 isoform A precursor [Homo sapiens] 27 4.5
gi|57165355 latrophilin 1 isoform 1 precursor [Homo sapiens] 27 4.5
gi|41281557 latrophilin 1 isoform 2 precursor [Homo sapiens] 27 4.5
gi|239756953 PREDICTED: hypothetical protein XP_002345113 [Homo ... 26 5.9
gi|239751432 PREDICTED: hypothetical protein XP_002347870 [Homo ... 26 5.9
gi|239745936 PREDICTED: hypothetical protein XP_002343581 [Homo ... 26 5.9
gi|4502399 filensin isoform 1 [Homo sapiens] 26 7.7
gi|239745147 PREDICTED: similar to Golgin subfamily A member 8-l... 26 7.7
gi|239745130 PREDICTED: similar to Golgin subfamily A member 8-l... 26 7.7
gi|239745111 PREDICTED: Golgin subfamily A member 8-like protein... 26 7.7
gi|239745099 PREDICTED: similar to Golgin subfamily A member 8-l... 26 7.7
gi|23200025 tumor necrosis factor receptor superfamily, member 2... 26 7.7
gi|23200023 tumor necrosis factor receptor superfamily, member 2... 26 7.7
gi|4507569 tumor necrosis factor receptor superfamily, member 25... 26 7.7
gi|60218910 golgi autoantigen, golgin subfamily a, 8G [Homo sapi... 26 7.7
>gi|239752419 PREDICTED: similar to translocase of inner
mitochondrial membrane 8 homolog B [Homo sapiens]
Length = 116
Score = 243 bits (619), Expect = 3e-65
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MNAHTDDLGKPWDIKLPSEPKIEIIPGSASTELTAELGEADGAELQHLVAAEQQKAQFTA 60
MNAHTDDLGKPWDIKLPSEPKIEIIPGSASTELTAELGEADGAELQHLVAAEQQKAQFTA
Sbjct: 1 MNAHTDDLGKPWDIKLPSEPKIEIIPGSASTELTAELGEADGAELQHLVAAEQQKAQFTA 60
Query: 61 QVHHFMELCWDKCVEKPGNRLDSCTENCLSSCVDHFIDTTLAITSRFAQIVQKGGQ 116
QVHHFMELCWDKCVEKPGNRLDSCTENCLSSCVDHFIDTTLAITSRFAQIVQKGGQ
Sbjct: 61 QVHHFMELCWDKCVEKPGNRLDSCTENCLSSCVDHFIDTTLAITSRFAQIVQKGGQ 116
>gi|239746934 PREDICTED: similar to translocase of inner
mitochondrial membrane 8 homolog B [Homo sapiens]
Length = 116
Score = 243 bits (619), Expect = 3e-65
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MNAHTDDLGKPWDIKLPSEPKIEIIPGSASTELTAELGEADGAELQHLVAAEQQKAQFTA 60
MNAHTDDLGKPWDIKLPSEPKIEIIPGSASTELTAELGEADGAELQHLVAAEQQKAQFTA
Sbjct: 1 MNAHTDDLGKPWDIKLPSEPKIEIIPGSASTELTAELGEADGAELQHLVAAEQQKAQFTA 60
Query: 61 QVHHFMELCWDKCVEKPGNRLDSCTENCLSSCVDHFIDTTLAITSRFAQIVQKGGQ 116
QVHHFMELCWDKCVEKPGNRLDSCTENCLSSCVDHFIDTTLAITSRFAQIVQKGGQ
Sbjct: 61 QVHHFMELCWDKCVEKPGNRLDSCTENCLSSCVDHFIDTTLAITSRFAQIVQKGGQ 116
>gi|239757907 PREDICTED: similar to translocase of inner
mitochondrial membrane 8 homolog B (yeast) [Homo
sapiens]
Length = 136
Score = 228 bits (582), Expect = 6e-61
Identities = 115/136 (84%), Positives = 115/136 (84%), Gaps = 20/136 (14%)
Query: 1 MNAHTDDLGKPWDIKLPSEPKIEIIPGSASTELT--------------------AELGEA 40
MNAHTDDLGKPWDIKLPSEPKIEIIPGSASTELT AELGEA
Sbjct: 1 MNAHTDDLGKPWDIKLPSEPKIEIIPGSASTELTTNDFNAKHLKNYWISLRXTKAELGEA 60
Query: 41 DGAELQHLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSCTENCLSSCVDHFIDTT 100
DGAE QHLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSCTENCLSSCVDHFIDTT
Sbjct: 61 DGAESQHLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSCTENCLSSCVDHFIDTT 120
Query: 101 LAITSRFAQIVQKGGQ 116
LAITSRFAQIVQKGGQ
Sbjct: 121 LAITSRFAQIVQKGGQ 136
>gi|6912712 translocase of inner mitochondrial membrane 8 homolog B
[Homo sapiens]
Length = 83
Score = 159 bits (402), Expect = 4e-40
Identities = 78/82 (95%), Positives = 78/82 (95%)
Query: 35 AELGEADGAELQHLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSCTENCLSSCVD 94
AELGEAD AELQ LVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDS TENCLSSCVD
Sbjct: 2 AELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVD 61
Query: 95 HFIDTTLAITSRFAQIVQKGGQ 116
FIDTTLAITSRFAQIVQKGGQ
Sbjct: 62 RFIDTTLAITSRFAQIVQKGGQ 83
>gi|4758152 translocase of inner mitochondrial membrane 8 homolog A
isoform 1 [Homo sapiens]
Length = 97
Score = 79.3 bits (194), Expect = 6e-16
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 28 SASTELTAELGEADGAELQHLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSCTEN 87
S+S+ A LG D +LQH + E QK +F VH ELCW+KC++KPG +LDS E
Sbjct: 3 SSSSSSAAGLGAVD-PQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAEA 61
Query: 88 CLSSCVDHFIDTTLAITSRFAQ 109
C +CV+ FIDT+ I +R Q
Sbjct: 62 CFVNCVERFIDTSQFILNRLEQ 83
>gi|11024700 translocase of inner mitochondrial membrane 13 [Homo
sapiens]
Length = 95
Score = 42.0 bits (97), Expect = 1e-04
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 35 AELGEADGAELQHLVAAEQQKAQFTAQ-----VHHFMELCWDKCVEKPGNRLDSCTENCL 89
++ G + +L + EQ K Q + + C+ KC+ KPG LD+ + C+
Sbjct: 7 SDFGGSGSGKLDPGLIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCI 66
Query: 90 SSCVDHFIDTTLAITSRFAQIVQK 113
+ C+D ++D ++ + +Q+
Sbjct: 67 AMCMDRYMDAWNTVSRAYNSRLQR 90
>gi|225543159 translocase of inner mitochondrial membrane 8
homolog A isoform 2 [Homo sapiens]
Length = 48
Score = 38.9 bits (89), Expect = 9e-04
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 28 SASTELTAELGEADGAELQHLVAAEQQKAQFTAQVHHFMELCW 70
S+S+ A LG D +LQH + E QK +F VH ELCW
Sbjct: 3 SSSSSSAAGLGAVD-PQLQHFIEVETQKQRFQQLVHQMTELCW 44
>gi|6912382 fractured callus expressed transcript 1 [Homo sapiens]
Length = 103
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 52 EQQKAQFTAQVHHFM-------ELCWDKCVEKPGNR-LDSCTENCLSSCVDHFIDTTLAI 103
+QQ+ Q + F+ ELC+ +CV +R LD+ E CL SC I + +
Sbjct: 4 QQQQQQQLRNLRDFLLVYNRMTELCFQRCVPSLHHRALDAEEEACLHSCAGKLIHSNHRL 63
Query: 104 TSRFAQIV 111
+ + Q++
Sbjct: 64 MAAYVQLM 71
>gi|13129078 alveolar soft part sarcoma chromosome region, candidate
1 [Homo sapiens]
Length = 553
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 7 DLGKPWDI-KLPSEPKIEIIPGSASTE-----LTAELGEADGAELQHLVAAEQQKAQFTA 60
DL W LP+ K+E++P S S E + L DG+ LQ + Q +
Sbjct: 60 DLSLQWRFANLPNNAKLEMVPASRSREGPENMVRIALQLDDGSRLQDSFCSGQTLWEL-- 117
Query: 61 QVHHFMELCWDKCVEKPGNRLDSC 84
+ HF ++ +C++ PG C
Sbjct: 118 -LSHFPQI--RECLQHPGGATPVC 138
>gi|239745140 PREDICTED: similar to hect domain and RLD 2 [Homo
sapiens]
Length = 1052
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 32 ELTAELGEADGAELQHLVAAEQQKAQFTAQV 62
EL +LGE E HL AA QQ Q TAQ+
Sbjct: 431 ELQEKLGEVKDTE--HLEAASQQNQQLTAQL 459
>gi|113425121 PREDICTED: similar to Golgin subfamily A member 8-like
protein 2 isoform 4 [Homo sapiens]
Length = 632
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 8 LGKPWDI--KLPSEPKIEIIPGSASTELTAELGEADGAELQHLVAAEQQKAQFTAQVH 63
L KP + +L +E K + EL +LGE +HL AA QQ Q TAQ++
Sbjct: 367 LAKPQSVFEELNNENKSTLQLEQQVKELQEKLGE------EHLEAASQQNQQLTAQLN 418
>gi|113425145 PREDICTED: similar to Golgin subfamily A member 8-like
protein 2 isoform 3 [Homo sapiens]
Length = 632
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 8 LGKPWDI--KLPSEPKIEIIPGSASTELTAELGEADGAELQHLVAAEQQKAQFTAQV 62
L KP + +L +E K + EL +LGE +HL AA QQ Q TAQ+
Sbjct: 367 LAKPQSVFEELNNENKSTLQLEQQVKELQEKLGE------EHLEAASQQNQQLTAQL 417
>gi|113425137 PREDICTED: similar to Golgin subfamily A member 8-like
protein 2 isoform 3 [Homo sapiens]
Length = 632
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 8 LGKPWDI--KLPSEPKIEIIPGSASTELTAELGEADGAELQHLVAAEQQKAQFTAQV 62
L KP + +L +E K + EL +LGE +HL AA QQ Q TAQ+
Sbjct: 367 LAKPQSVFEELNNENKSTLQLEQQVKELQEKLGE------EHLEAASQQNQQLTAQL 417
>gi|47132577 AMP-activated protein kinase, non-catalytic gamma-3
subunit [Homo sapiens]
Length = 489
Score = 26.9 bits (58), Expect = 3.5
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 12 WDIKLPSEPKIEIIPGSAS-TELTAELGEADGAELQHLVAAEQQKAQFTAQVHHFMELCW 70
WD LPS+ S EL E + E + E++ A + F +L W
Sbjct: 114 WDC-LPSDCTASAAGSSTDDVELATEFPATEAWECELEGLLEERPALCLSPQAPFPKLGW 172
Query: 71 DKCVEKPGNRL-------DSCTENCLSSCVDHFIDTTLAITSRFAQIVQKG 114
D + KPG ++ +C + +S DT L I F +V G
Sbjct: 173 DDELRKPGAQIYMRFMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANG 223
>gi|8394456 toll-like receptor 9 isoform A precursor [Homo sapiens]
Length = 1032
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 28 SASTELTAELGEADGAE 44
S ++ELTA +GEADG E
Sbjct: 428 SGASELTATMGEADGGE 444
>gi|57165355 latrophilin 1 isoform 1 precursor [Homo sapiens]
Length = 1474
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 17 PSEPKIEIIPGSASTELTAELGEADGAELQHLVAAEQQ 54
P EP + +PG E G AD AE++ L A ++
Sbjct: 1305 PPEPPVPPVPGGGGEEEAGGPGGADRAEIELLYKALEE 1342
>gi|41281557 latrophilin 1 isoform 2 precursor [Homo sapiens]
Length = 1469
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 17 PSEPKIEIIPGSASTELTAELGEADGAELQHLVAAEQQ 54
P EP + +PG E G AD AE++ L A ++
Sbjct: 1300 PPEPPVPPVPGGGGEEEAGGPGGADRAEIELLYKALEE 1337
>gi|239756953 PREDICTED: hypothetical protein XP_002345113 [Homo
sapiens]
Length = 161
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 29 ASTELTAELGEADGAELQHLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGN 79
A +EL AELG G + AEQ A H EL C++ P +
Sbjct: 61 AESELQAELGTGAGFGAGAELKAEQSVAGLLLDPHLMTELVAGFCLDVPAS 111
>gi|239751432 PREDICTED: hypothetical protein XP_002347870 [Homo
sapiens]
Length = 161
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 29 ASTELTAELGEADGAELQHLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGN 79
A +EL AELG G + AEQ A H EL C++ P +
Sbjct: 61 AESELQAELGTGAGFGAGAELKAEQSVAGLLLDPHLMTELVAGFCLDVPAS 111
>gi|239745936 PREDICTED: hypothetical protein XP_002343581 [Homo
sapiens]
Length = 161
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 29 ASTELTAELGEADGAELQHLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGN 79
A +EL AELG G + AEQ A H EL C++ P +
Sbjct: 61 AESELQAELGTGAGFGAGAELKAEQSVAGLLLDPHLMTELVAGFCLDVPAS 111
>gi|4502399 filensin isoform 1 [Homo sapiens]
Length = 665
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 4 HTDDLGKPWDIKLPSEPKIEIIPGSASTELTAELGEADGAELQHLVAAEQQKAQFTAQVH 63
H D+ + + P P E G+ S LGE A +Q A EQ+ A Q+
Sbjct: 17 HADEASRAAE---PERPADEGWAGATSLAALQGLGERVAAHVQRARALEQRHAGLRRQLD 73
Query: 64 HFMEL 68
F L
Sbjct: 74 AFQRL 78
>gi|239745147 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 1 [Homo sapiens]
Length = 630
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 32 ELTAELGEADGAELQHLVAAEQQKAQFTAQV 62
EL +LGE +HL AA QQ Q TAQ+
Sbjct: 393 ELQEKLGE------EHLEAASQQNQQLTAQL 417
>gi|239745130 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 1 [Homo sapiens]
Length = 632
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 32 ELTAELGEADGAELQHLVAAEQQKAQFTAQV 62
EL +LGE +HL AA QQ Q TAQ+
Sbjct: 393 ELQEKLGE------EHLEAASQQNQQLTAQL 417
>gi|239745111 PREDICTED: Golgin subfamily A member 8-like protein 3
isoform 1 [Homo sapiens]
Length = 632
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 32 ELTAELGEADGAELQHLVAAEQQKAQFTAQV 62
EL +LGE +HL AA QQ Q TAQ+
Sbjct: 393 ELQEKLGE------EHLEAASQQNQQLTAQL 417
>gi|239745099 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 1 [Homo sapiens]
Length = 632
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 32 ELTAELGEADGAELQHLVAAEQQKAQFTAQV 62
EL +LGE +HL AA QQ Q TAQ+
Sbjct: 393 ELQEKLGE------EHLEAASQQNQQLTAQL 417
>gi|23200025 tumor necrosis factor receptor superfamily, member 25
isoform 4 precursor [Homo sapiens]
Length = 372
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 71 DKCVEKPGNRLDSCTENCLSSC 92
D CV P + L SC E C + C
Sbjct: 129 DGCVSCPTSTLGSCPERCAAVC 150
>gi|23200023 tumor necrosis factor receptor superfamily, member 25
isoform 3 precursor [Homo sapiens]
Length = 380
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 71 DKCVEKPGNRLDSCTENCLSSC 92
D CV P + L SC E C + C
Sbjct: 174 DGCVSCPTSTLGSCPERCAAVC 195
>gi|4507569 tumor necrosis factor receptor superfamily, member 25
isoform 2 precursor [Homo sapiens]
Length = 417
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 71 DKCVEKPGNRLDSCTENCLSSC 92
D CV P + L SC E C + C
Sbjct: 174 DGCVSCPTSTLGSCPERCAAVC 195
>gi|60218910 golgi autoantigen, golgin subfamily a, 8G [Homo
sapiens]
Length = 434
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 32 ELTAELGEADGAELQHLVAAEQQKAQFTAQV 62
EL +LG+ E + L AA QQK Q TAQ+
Sbjct: 188 ELQEKLGKVK--ETERLEAASQQKQQLTAQL 216
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,697,747
Number of Sequences: 37866
Number of extensions: 181640
Number of successful extensions: 494
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 29
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.