Search of human proteins with 116875831

Search of human proteins with 116875831

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116875831 regulator of microtubule dynamics 1 [Homo sapiens]
         (314 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|116875831 regulator of microtubule dynamics 1 [Homo sapiens]       634   0.0  
gi|8922532 family with sequence similarity 82, member A2 [Homo s...   135   4e-32
gi|21389491 family with sequence similarity 82, member A1 [Homo ...   122   5e-28
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ...    35   0.086
gi|21071060 SWI/SNF-related matrix-associated actin-dependent re...    33   0.43 
gi|187761314 SWI/SNF-related matrix-associated actin-dependent r...    33   0.43 
gi|118402596 cell division cycle protein 23 [Homo sapiens]             32   0.56 
gi|22209001 hypothetical protein LOC200765 [Homo sapiens]              32   0.73 
gi|32967514 neurofibromin 2 isoform 7 [Homo sapiens]                   32   0.96 
gi|32967254 neurofibromin 2 isoform 2 [Homo sapiens]                   32   0.96 
gi|32967266 neurofibromin 2 isoform 2 [Homo sapiens]                   32   0.96 
gi|32967264 neurofibromin 2 isoform 7 [Homo sapiens]                   32   0.96 
gi|32967262 neurofibromin 2 isoform 6 [Homo sapiens]                   32   0.96 
gi|32967260 neurofibromin 2 isoform 5 [Homo sapiens]                   32   0.96 
gi|32451486 neurofibromin 2 isoform 2 [Homo sapiens]                   32   0.96 
gi|4557795 neurofibromin 2 isoform 1 [Homo sapiens]                    32   0.96 
gi|71061468 centromere protein E [Homo sapiens]                        31   1.2  
gi|157502225 Janus kinase and microtubule interacting protein 3 ...    30   2.1  
gi|45359865 matrix metalloproteinase 20 preproprotein [Homo sapi...    29   4.7  
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo...    29   4.7  
gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]    29   4.7  
gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]    29   4.7  
gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]    29   4.7  
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]                29   6.2  
gi|167466177 cell division cycle protein 27 isoform 1 [Homo sapi...    29   6.2  
gi|167466175 cell division cycle protein 27 isoform 2 [Homo sapi...    29   6.2  

>gi|116875831 regulator of microtubule dynamics 1 [Homo sapiens]
          Length = 314

 Score =  634 bits (1634), Expect = 0.0
 Identities = 314/314 (100%), Positives = 314/314 (100%)

Query: 1   MALAARLWRLLPFRRGAAPGSRLPAGTSGSRGHCGPCRFRGFEVMGNPGTFKRGLLLSAL 60
           MALAARLWRLLPFRRGAAPGSRLPAGTSGSRGHCGPCRFRGFEVMGNPGTFKRGLLLSAL
Sbjct: 1   MALAARLWRLLPFRRGAAPGSRLPAGTSGSRGHCGPCRFRGFEVMGNPGTFKRGLLLSAL 60

Query: 61  SYLGFETYQVISQAAVVHATAKVEEILEQADYLYESGETEKLYQLLTQYKESEDAELLWR 120
           SYLGFETYQVISQAAVVHATAKVEEILEQADYLYESGETEKLYQLLTQYKESEDAELLWR
Sbjct: 61  SYLGFETYQVISQAAVVHATAKVEEILEQADYLYESGETEKLYQLLTQYKESEDAELLWR 120

Query: 121 LARASRDVAQLSRTSEEEKKLLVYEALEYAKRALEKNESSFASHKWYAICLSDVGDYEGI 180
           LARASRDVAQLSRTSEEEKKLLVYEALEYAKRALEKNESSFASHKWYAICLSDVGDYEGI
Sbjct: 121 LARASRDVAQLSRTSEEEKKLLVYEALEYAKRALEKNESSFASHKWYAICLSDVGDYEGI 180

Query: 181 KAKIANAYIIKEHFEKAIELNPKDATSIHLMGIWCYTFAEMPWYQRRIAKMLFATPPSST 240
           KAKIANAYIIKEHFEKAIELNPKDATSIHLMGIWCYTFAEMPWYQRRIAKMLFATPPSST
Sbjct: 181 KAKIANAYIIKEHFEKAIELNPKDATSIHLMGIWCYTFAEMPWYQRRIAKMLFATPPSST 240

Query: 241 YEKALGYFHRAEQVDPNFYSKNLLLLGKTYLKLHNKKLAAFWLMKAKDYPAHTEEDKQIQ 300
           YEKALGYFHRAEQVDPNFYSKNLLLLGKTYLKLHNKKLAAFWLMKAKDYPAHTEEDKQIQ
Sbjct: 241 YEKALGYFHRAEQVDPNFYSKNLLLLGKTYLKLHNKKLAAFWLMKAKDYPAHTEEDKQIQ 300

Query: 301 TEAAQLLTSFSEKN 314
           TEAAQLLTSFSEKN
Sbjct: 301 TEAAQLLTSFSEKN 314


>gi|8922532 family with sequence similarity 82, member A2 [Homo
           sapiens]
          Length = 470

 Score =  135 bits (341), Expect = 4e-32
 Identities = 77/225 (34%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 86  ILEQADYLYESGETEKL--YQLLTQYK--ESEDAELLWRLARASRDVAQLSRTSEEEKKL 141
           +L+QAD L+   E  K   +QLL   K       + LWRLARA  D+ +L+     EKK 
Sbjct: 241 LLQQADELHRGDEQGKREGFQLLLNNKLVYGSRQDFLWRLARAYSDMCELTE-EVSEKKS 299

Query: 142 LVYEALEYAKRALEKNESSFASHKWYAICLSDVGDYEGIKAKIANAYIIKEHFEKAIELN 201
              +  E A+ ALEK + S   H WYA+    + ++E I+ +I + +  KEH +KAI L 
Sbjct: 300 YALDGKEEAEAALEKGDESADCHLWYAVLCGQLAEHESIQRRIQSGFSFKEHVDKAIALQ 359

Query: 202 PKDATSIHLMGIWCYTFAEMPWYQRRIAKMLFATPPSSTYEKALGYFHRAEQVDPNFYSK 261
           P++  +  L+G WCY  + + W +++ A  L  +P S+T E AL  F +AE++ P F   
Sbjct: 360 PENPMAHFLLGRWCYQVSHLSWLEKKTATALLESPLSATVEDALQSFLKAEELQPGFSKA 419

Query: 262 NLLLLGKTYLKLHNKKLAAFWLMKAKDYPAHTEEDKQIQTEAAQL 306
             + + K Y +L     A +W+  A + P  T+ED  IQ +  +L
Sbjct: 420 GRVYISKCYRELGKNSEARWWMKLALELPDVTKEDLAIQKDLEEL 464


>gi|21389491 family with sequence similarity 82, member A1 [Homo
           sapiens]
          Length = 573

 Score =  122 bits (305), Expect = 5e-28
 Identities = 71/218 (32%), Positives = 126/218 (57%), Gaps = 6/218 (2%)

Query: 83  VEEILEQADYLY--ESGETEKLYQLLTQYKES--EDAELLWRLARASRDVAQLSRTSEEE 138
           ++ +L++ D+L   ESG++E  ++LL  +KE   ++ E +WR ARA  D+ +LS T+ +E
Sbjct: 357 LDVLLQKVDHLRMSESGKSES-FELLRDHKEKFRDEIEFMWRFARAYGDMYELS-TNTQE 414

Query: 139 KKLLVYEALEYAKRALEKNESSFASHKWYAICLSDVGDYEGIKAKIANAYIIKEHFEKAI 198
           KK         ++RA+ +   +   H WYA+    V ++EG++ KI   ++ KEH + AI
Sbjct: 415 KKHYANIGKTLSERAINRAPMNGHCHLWYAVLCGYVSEFEGLQNKINYGHLFKEHLDIAI 474

Query: 199 ELNPKDATSIHLMGIWCYTFAEMPWYQRRIAKMLFATPPSSTYEKALGYFHRAEQVDPNF 258
           +L P++    +L G +CYT +++ W ++++A  LF   PSST ++AL  F +AE++ P +
Sbjct: 475 KLLPEEPFLYYLKGRYCYTVSKLSWIEKKMAATLFGKIPSSTVQEALHNFLKAEELCPGY 534

Query: 259 YSKNLLLLGKTYLKLHNKKLAAFWLMKAKDYPAHTEED 296
            + N + L K Y  L   + A  +   A   P  T+E+
Sbjct: 535 SNPNYMYLAKCYTDLEENQNALKFCNLALLLPTVTKEE 572


>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin
           (with transmembrane signal), 1 [Homo sapiens]
          Length = 3259

 Score = 35.0 bits (79), Expect = 0.086
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 82  KVEEILEQADYL-YESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSRTSEEEKK 140
           K  E+LE A+ + + S + E+L Q L+Q KE E  ++   L    RDV  L +T EE+ +
Sbjct: 843 KESEVLEGAERVRHISSKVEELSQALSQ-KELEITKMDQLLLEKKRDVETLQQTIEEKDQ 901

Query: 141 LLVYEALEYAKRALEKNESSFA 162
            +   +    ++ ++ NE  F+
Sbjct: 902 QVTEISFSMTEKMVQLNEEKFS 923


>gi|21071060 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a-like 1 [Homo sapiens]
          Length = 954

 Score = 32.7 bits (73), Expect = 0.43
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 66  ETYQVISQAAVVHATAKVEEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARAS 125
           E  +V+++A +  +     E+ E  DYLY+  + +K+Y L  +  E E +++    A  S
Sbjct: 848 EKIKVLAEAGL--SETNFSEMTESTDYLYKDPKQQKIYDLFQKSFEKEGSDMELLEAAES 905

Query: 126 RDVAQLSRTS 135
            D    S TS
Sbjct: 906 FDPGSASGTS 915


>gi|187761314 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a-like 1 [Homo sapiens]
          Length = 954

 Score = 32.7 bits (73), Expect = 0.43
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 66  ETYQVISQAAVVHATAKVEEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARAS 125
           E  +V+++A +  +     E+ E  DYLY+  + +K+Y L  +  E E +++    A  S
Sbjct: 848 EKIKVLAEAGL--SETNFSEMTESTDYLYKDPKQQKIYDLFQKSFEKEGSDMELLEAAES 905

Query: 126 RDVAQLSRTS 135
            D    S TS
Sbjct: 906 FDPGSASGTS 915


>gi|118402596 cell division cycle protein 23 [Homo sapiens]
          Length = 597

 Score = 32.3 bits (72), Expect = 0.56
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 30/142 (21%)

Query: 156 KNESSFASH------KWYAICLSDVGDYEGIKAKIANAYIIKEHFEKAIELNPKDATSIH 209
           K+E S+ +H      K+       +G+Y  ++++   A +   +F++A++LNP+   +  
Sbjct: 313 KSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAAL---YFQRALKLNPRYLGAWT 369

Query: 210 LMGIWCYTFAEMPWYQRRIAKMLFATPPS-----------STYE------KALGYFHRAE 252
           LMG   + + EM      I     A   +            TYE        L Y+ RA 
Sbjct: 370 LMG---HEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLYYYRRAH 426

Query: 253 QVDPNFYSKNLLLLGKTYLKLH 274
           Q+ PN  S+ L+ LG+ Y KL+
Sbjct: 427 QLRPN-DSRMLVALGECYEKLN 447


>gi|22209001 hypothetical protein LOC200765 [Homo sapiens]
          Length = 591

 Score = 32.0 bits (71), Expect = 0.73
 Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 11/135 (8%)

Query: 85  EILEQADYLYESGETEKLYQLLTQYKESEDAELLWR------LARASRDVAQLSRTSEEE 138
           EI E+ + ++    T  + Q + Q   S       R      LA    DV+  S  S+ +
Sbjct: 313 EIYEEINVIFMPANTTSILQPMDQGVISTFKSYYLRNTFHKALAAMDSDVSDGSGQSKLK 372

Query: 139 ---KKLLVYEALEYAKRALEKNESSFASHKWYAICLSDVGDYEGIKAKI--ANAYIIKEH 193
              K   + +A++  + + E+ + S  +  W  +  + + DYEG K  +   +A +++  
Sbjct: 373 TFWKGFTILDAIKNIRDSWEEVKLSTLTGVWKKLIPTLIDDYEGFKTSVEEVSADVVEIA 432

Query: 194 FEKAIELNPKDATSI 208
            E  +E+ P+D T +
Sbjct: 433 KELELEVEPEDVTEL 447


>gi|32967514 neurofibromin 2 isoform 7 [Homo sapiens]
          Length = 507

 Score = 31.6 bits (70), Expect = 0.96
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 84  EEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSRTS---EEEKK 140
           EE     + L  S ET  L     Q  E E   L  + A A +++ ++  T+   EEEK+
Sbjct: 282 EEATMANEALMRSEETADLLAEKAQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEEEKR 341

Query: 141 LLVYEALEYAKRALEKNESS 160
           L+  + LE    AL+  E S
Sbjct: 342 LMEQKVLEAEVLALKMAEES 361


>gi|32967254 neurofibromin 2 isoform 2 [Homo sapiens]
          Length = 590

 Score = 31.6 bits (70), Expect = 0.96
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 84  EEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSRTS---EEEKK 140
           EE     + L  S ET  L     Q  E E   L  + A A +++ ++  T+   EEEK+
Sbjct: 365 EEATMANEALMRSEETADLLAEKAQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEEEKR 424

Query: 141 LLVYEALEYAKRALEKNESS 160
           L+  + LE    AL+  E S
Sbjct: 425 LMEQKVLEAEVLALKMAEES 444


>gi|32967266 neurofibromin 2 isoform 2 [Homo sapiens]
          Length = 590

 Score = 31.6 bits (70), Expect = 0.96
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 84  EEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSRTS---EEEKK 140
           EE     + L  S ET  L     Q  E E   L  + A A +++ ++  T+   EEEK+
Sbjct: 365 EEATMANEALMRSEETADLLAEKAQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEEEKR 424

Query: 141 LLVYEALEYAKRALEKNESS 160
           L+  + LE    AL+  E S
Sbjct: 425 LMEQKVLEAEVLALKMAEES 444


>gi|32967264 neurofibromin 2 isoform 7 [Homo sapiens]
          Length = 507

 Score = 31.6 bits (70), Expect = 0.96
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 84  EEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSRTS---EEEKK 140
           EE     + L  S ET  L     Q  E E   L  + A A +++ ++  T+   EEEK+
Sbjct: 282 EEATMANEALMRSEETADLLAEKAQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEEEKR 341

Query: 141 LLVYEALEYAKRALEKNESS 160
           L+  + LE    AL+  E S
Sbjct: 342 LMEQKVLEAEVLALKMAEES 361


>gi|32967262 neurofibromin 2 isoform 6 [Homo sapiens]
          Length = 549

 Score = 31.6 bits (70), Expect = 0.96
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 84  EEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSRTS---EEEKK 140
           EE     + L  S ET  L     Q  E E   L  + A A +++ ++  T+   EEEK+
Sbjct: 324 EEATMANEALMRSEETADLLAEKAQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEEEKR 383

Query: 141 LLVYEALEYAKRALEKNESS 160
           L+  + LE    AL+  E S
Sbjct: 384 LMEQKVLEAEVLALKMAEES 403


>gi|32967260 neurofibromin 2 isoform 5 [Homo sapiens]
          Length = 548

 Score = 31.6 bits (70), Expect = 0.96
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 84  EEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSRTS---EEEKK 140
           EE     + L  S ET  L     Q  E E   L  + A A +++ ++  T+   EEEK+
Sbjct: 323 EEATMANEALMRSEETADLLAEKAQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEEEKR 382

Query: 141 LLVYEALEYAKRALEKNESS 160
           L+  + LE    AL+  E S
Sbjct: 383 LMEQKVLEAEVLALKMAEES 402


>gi|32451486 neurofibromin 2 isoform 2 [Homo sapiens]
          Length = 590

 Score = 31.6 bits (70), Expect = 0.96
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 84  EEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSRTS---EEEKK 140
           EE     + L  S ET  L     Q  E E   L  + A A +++ ++  T+   EEEK+
Sbjct: 365 EEATMANEALMRSEETADLLAEKAQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEEEKR 424

Query: 141 LLVYEALEYAKRALEKNESS 160
           L+  + LE    AL+  E S
Sbjct: 425 LMEQKVLEAEVLALKMAEES 444


>gi|4557795 neurofibromin 2 isoform 1 [Homo sapiens]
          Length = 595

 Score = 31.6 bits (70), Expect = 0.96
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 84  EEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSRTS---EEEKK 140
           EE     + L  S ET  L     Q  E E   L  + A A +++ ++  T+   EEEK+
Sbjct: 365 EEATMANEALMRSEETADLLAEKAQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEEEKR 424

Query: 141 LLVYEALEYAKRALEKNESS 160
           L+  + LE    AL+  E S
Sbjct: 425 LMEQKVLEAEVLALKMAEES 444


>gi|71061468 centromere protein E [Homo sapiens]
          Length = 2701

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 84   EEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSRTSEEEKKLLV 143
            +E+L     + E+ ET    +LLT+   ++D+  L R+      + +  + S+EE K L 
Sbjct: 1289 QELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLT 1348

Query: 144  YEA--LEYAKRALEKNESSFASH 164
             E   L+  K ALE        H
Sbjct: 1349 KERDNLKTIKEALEVKHDQLKEH 1371


>gi|157502225 Janus kinase and microtubule interacting protein 3
           [Homo sapiens]
          Length = 844

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 8/96 (8%)

Query: 66  ETYQVISQAAVVHATAKVEEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARAS 125
           E   ++  A    A AKV E+L +        E EKL   + Q+K    +EL  R A+  
Sbjct: 742 ELEAMLYDALQQEAGAKVAELLSEE-------EREKLKVAVEQWKRQVMSELRERDAQIL 794

Query: 126 RDVAQLSRTSEEEKKLLVYEALEYAKRALEKNESSF 161
           R+  +L + +++  K L  E +E  KR +++ E  F
Sbjct: 795 RERMELLQLAQQRIKEL-EERIEAQKRQIKELEEKF 829


>gi|45359865 matrix metalloproteinase 20 preproprotein [Homo
           sapiens]
          Length = 483

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 236 PPSSTYEKALGYFHRAEQVDPNFY----SKNLLLLGKTYLKLHNKKLAAFWLMKAKDYPA 291
           PP + Y+   G+    +Q+D   Y     K L  +G  Y     +K         KDYP 
Sbjct: 378 PPRTIYD--FGFPRHVQQIDAAVYLREPQKTLFFVGDEYYSYDERKRKM-----EKDYPK 430

Query: 292 HTEED 296
           +TEE+
Sbjct: 431 NTEEE 435


>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
            [Homo sapiens]
          Length = 8749

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 12/104 (11%)

Query: 76   VVHATAKVEEILEQADYLYESGETEKLYQLLTQYKESED------AELLWRLARASRDVA 129
            VV+    +E+  +Q D   ++ E +K ++ +T Y++  +       E+L      SR   
Sbjct: 3603 VVNKLRLMEQKFQQVDEWLKTAEEKKWHEEVTAYRDEVEEVGARAQEILDESHVNSRMGC 3662

Query: 130  QLSRTSEEEKKLLV-----YEALEYAKRALEKNESSFASHK-WY 167
            Q ++ +   + LL+      + LE   ++LE++ESS +S+  WY
Sbjct: 3663 QATQLTSRYQALLLQVLEQIKFLEEEIQSLEESESSLSSYSDWY 3706


>gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]
          Length = 1197

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 82  KVEEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSRTSEEEKKL 141
           K +E LE    L E  E E        Y+E+++  LL +  + SRD+ +L  T   E  L
Sbjct: 446 KDQEALEAVKRLKEKLEAE---MKKLNYEENKEESLLEKRRQLSRDIGRLKET--YEALL 500

Query: 142 LVYEALEYAKRALEKN 157
             +  L +A +  EKN
Sbjct: 501 ARFPNLRFAYKDPEKN 516


>gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]
          Length = 1197

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 82  KVEEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSRTSEEEKKL 141
           K +E LE    L E  E E        Y+E+++  LL +  + SRD+ +L  T   E  L
Sbjct: 446 KDQEALEAVKRLKEKLEAE---MKKLNYEENKEESLLEKRRQLSRDIGRLKET--YEALL 500

Query: 142 LVYEALEYAKRALEKN 157
             +  L +A +  EKN
Sbjct: 501 ARFPNLRFAYKDPEKN 516


>gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]
          Length = 1197

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 82  KVEEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSRTSEEEKKL 141
           K +E LE    L E  E E        Y+E+++  LL +  + SRD+ +L  T   E  L
Sbjct: 446 KDQEALEAVKRLKEKLEAE---MKKLNYEENKEESLLEKRRQLSRDIGRLKET--YEALL 500

Query: 142 LVYEALEYAKRALEKN 157
             +  L +A +  EKN
Sbjct: 501 ARFPNLRFAYKDPEKN 516


>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
          Length = 703

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 10  LLPFRRGAAPGSRLPAGTSGSRGHCGPCRFRGFEVMGNPG 49
           LLP      PG   P G  G RG  GP  F G   MG PG
Sbjct: 70  LLPMDLKGEPG---PPGKPGPRGPPGPPGFPGKPGMGKPG 106


>gi|167466177 cell division cycle protein 27 isoform 1 [Homo
           sapiens]
          Length = 830

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 21/104 (20%)

Query: 193 HFEKAIELNPKDATSIHLMGIWCYTFAEM-----------------PWYQRRIAKMLFAT 235
           HF+KA+++NP+ +  +  +G+  +   +                  P  +   A +LFA 
Sbjct: 663 HFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFA- 721

Query: 236 PPSSTYEKALGYFHRAEQVDPNFYSKNLLLLGKTYLKLHNKKLA 279
             +  Y+ AL      +Q+ P   S    L+GK Y KL    LA
Sbjct: 722 --NEKYKSALQELEELKQIVPK-ESLVYFLIGKVYKKLGQTHLA 762


>gi|167466175 cell division cycle protein 27 isoform 2 [Homo
           sapiens]
          Length = 824

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 21/104 (20%)

Query: 193 HFEKAIELNPKDATSIHLMGIWCYTFAEM-----------------PWYQRRIAKMLFAT 235
           HF+KA+++NP+ +  +  +G+  +   +                  P  +   A +LFA 
Sbjct: 657 HFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFA- 715

Query: 236 PPSSTYEKALGYFHRAEQVDPNFYSKNLLLLGKTYLKLHNKKLA 279
             +  Y+ AL      +Q+ P   S    L+GK Y KL    LA
Sbjct: 716 --NEKYKSALQELEELKQIVPK-ESLVYFLIGKVYKKLGQTHLA 756


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,500,667
Number of Sequences: 37866
Number of extensions: 490810
Number of successful extensions: 2321
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2307
Number of HSP's gapped (non-prelim): 43
length of query: 314
length of database: 18,247,518
effective HSP length: 102
effective length of query: 212
effective length of database: 14,385,186
effective search space: 3049659432
effective search space used: 3049659432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.