Guide to the Human Genome
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Name: FAM82A1 Sequence: fasta or formatted (573aa) NCBI GI: 21389491
Description:

family with sequence similarity 82, member A1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         33           2
 C cysteine            2.3         13           2
 D aspartate           4.9         28           1
 E glutamate           7.2         41           2
 F phenylalanine       6.5         37           2
 G glycine             4.2         24           1
 H histidine           3.0         17           1
 I isoleucine          5.1         29           1
 K lysine              6.8         39           2
 L leucine             8.0         46           3
 M methionine          1.4          8           1
 N asparagine          5.2         30           1
 P proline             4.9         28           2
 Q glutamine           4.7         27           2
 R arginine            4.5         26           4
 S serine             12.4         71           3
 T threonine           5.4         31           2
 V valine              3.0         17           1
 W tryptophan          0.7          4           1
 Y tyrosine            4.2         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 82, member A1 
FAM82A2               0.160   family with sequence similarity 82, member A2 
FAM82B                0.085   regulator of microtubule dynamics 1 
DSPP                  0.009   dentin sialophosphoprotein preproprotein 
DMP1                  0.007   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.007   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
KIAA1267              0.006   hypothetical protein LOC284058 
LOC283767             0.005   golgi autoantigen, golgin subfamily a-like 
GPRIN2                0.005   G protein-regulated inducer of neurite outgrowth 2 ...
NDST2                 0.005   heparan glucosaminyl N-deacetylase/N-sulfotransferase...
MUC3A                 0.004   PREDICTED: mucin 3A, intestinal 
CTSB                  0.004   cathepsin B preproprotein 
CTSB                  0.004   cathepsin B preproprotein 
CTSB                  0.004   cathepsin B preproprotein 
CTSB                  0.004   cathepsin B preproprotein 
CTSB                  0.004   cathepsin B preproprotein 
GAS2L2                0.004   growth arrest-specific 2 like 2 
NSMAF                 0.004   neutral sphingomyelinase (N-SMase) activation associ...
NSMAF                 0.004   neutral sphingomyelinase (N-SMase) activation assoc...
CLSPN                 0.004   claspin 
PHF20L1               0.004   PHD finger protein 20-like 1 isoform 2 
PHF20L1               0.004   PHD finger protein 20-like 1 isoform 1 
ZNF608                0.004   zinc finger protein 608 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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