Guide to the Human Genome
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Name: FAM82B Sequence: fasta or formatted (314aa) NCBI GI: 116875831
Description:

regulator of microtubule dynamics 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         37           2
 C cysteine            1.3          4           1
 D aspartate           2.9          9           1
 E glutamate           9.2         29           3
 F phenylalanine       4.1         13           1
 G glycine             5.4         17           1
 H histidine           2.5          8           1
 I isoleucine          3.8         12           2
 K lysine              8.0         25           2
 L leucine            12.1         38           4
 M methionine          1.9          6           1
 N asparagine          2.5          8           1
 P proline             3.5         11           2
 Q glutamine           3.5         11           1
 R arginine            5.4         17           2
 S serine              6.7         21           2
 T threonine           4.8         15           1
 V valine              2.9          9           2
 W tryptophan          1.9          6           1
 Y tyrosine            5.7         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   regulator of microtubule dynamics 1 
FAM82A2               0.181   family with sequence similarity 82, member A2 
FAM82A1               0.159   family with sequence similarity 82, member A1 
GOLGB1                0.016   golgi autoantigen, golgin subfamily b, macrogolgin ...
SMARCAL1              0.013   SWI/SNF-related matrix-associated actin-dependent re...
SMARCAL1              0.013   SWI/SNF-related matrix-associated actin-dependent r...
CDC23                 0.011   cell division cycle protein 23 
TIGD1                 0.011   hypothetical protein LOC200765 
NF2                   0.011   neurofibromin 2 isoform 7 
NF2                   0.011   neurofibromin 2 isoform 2 
NF2                   0.011   neurofibromin 2 isoform 2 
NF2                   0.011   neurofibromin 2 isoform 7 
NF2                   0.011   neurofibromin 2 isoform 6 
NF2                   0.011   neurofibromin 2 isoform 5 
NF2                   0.011   neurofibromin 2 isoform 2 
NF2                   0.011   neurofibromin 2 isoform 1 
CENPE                 0.010   centromere protein E 
JAKMIP3               0.008   Janus kinase and microtubule interacting protein 3 ...
MMP20                 0.007   matrix metalloproteinase 20 preproprotein 
SYNE1                 0.007   spectrin repeat containing, nuclear envelope 1 isofo...
SMC2                  0.007   structural maintenance of chromosomes 2 
SMC2                  0.007   structural maintenance of chromosomes 2 
SMC2                  0.007   structural maintenance of chromosomes 2 
COL8A2                0.007   collagen, type VIII, alpha 2 
CDC27                 0.007   cell division cycle protein 27 isoform 1 
CDC27                 0.007   cell division cycle protein 27 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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