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Search of human proteins with 239746784
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746784 PREDICTED: hypothetical protein XP_002343849 [Homo
sapiens]
(108 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757759 PREDICTED: hypothetical protein XP_002346331 [Homo ... 226 3e-60
gi|239752271 PREDICTED: hypothetical protein [Homo sapiens] 226 3e-60
gi|239746784 PREDICTED: hypothetical protein XP_002343849 [Homo ... 226 3e-60
gi|109255251 loricrin [Homo sapiens] 42 1e-04
gi|109452587 family with sequence similarity 98, member B isofor... 40 5e-04
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 39 0.001
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 39 0.001
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 39 0.001
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 37 0.003
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 37 0.003
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 37 0.003
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 37 0.003
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 37 0.003
gi|15011916 nucleolar protein family A, member 1 [Homo sapiens] 37 0.003
gi|9506713 nucleolar protein family A, member 1 [Homo sapiens] 37 0.003
gi|33620755 YEATS domain containing 2 [Homo sapiens] 35 0.013
gi|12056465 fibrillarin [Homo sapiens] 35 0.017
gi|12707580 paired-like homeobox 2b [Homo sapiens] 35 0.017
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 34 0.022
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 34 0.022
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 34 0.029
gi|194018511 keratin 77 [Homo sapiens] 34 0.029
gi|195972866 keratin 10 [Homo sapiens] 34 0.029
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho... 34 0.029
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom... 34 0.029
gi|154091020 leucine-rich repeats and calponin homology (CH) dom... 34 0.029
gi|13775236 scratch [Homo sapiens] 34 0.029
gi|153791670 keratin 76 [Homo sapiens] 33 0.038
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 33 0.038
gi|154759423 Cdk5 and Abl enzyme substrate 1 isoform 2 [Homo sap... 33 0.038
>gi|239757759 PREDICTED: hypothetical protein XP_002346331 [Homo
sapiens]
Length = 108
Score = 226 bits (576), Expect = 3e-60
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MPPVPREKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG 60
MPPVPREKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG
Sbjct: 1 MPPVPREKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG 60
Query: 61 LTLGAGQQAGCAQRLMAHLAKLLPGAGKPEASGQQAAARKDSDNSAWE 108
LTLGAGQQAGCAQRLMAHLAKLLPGAGKPEASGQQAAARKDSDNSAWE
Sbjct: 61 LTLGAGQQAGCAQRLMAHLAKLLPGAGKPEASGQQAAARKDSDNSAWE 108
>gi|239752271 PREDICTED: hypothetical protein [Homo sapiens]
Length = 108
Score = 226 bits (576), Expect = 3e-60
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MPPVPREKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG 60
MPPVPREKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG
Sbjct: 1 MPPVPREKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG 60
Query: 61 LTLGAGQQAGCAQRLMAHLAKLLPGAGKPEASGQQAAARKDSDNSAWE 108
LTLGAGQQAGCAQRLMAHLAKLLPGAGKPEASGQQAAARKDSDNSAWE
Sbjct: 61 LTLGAGQQAGCAQRLMAHLAKLLPGAGKPEASGQQAAARKDSDNSAWE 108
>gi|239746784 PREDICTED: hypothetical protein XP_002343849 [Homo
sapiens]
Length = 108
Score = 226 bits (576), Expect = 3e-60
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MPPVPREKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG 60
MPPVPREKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG
Sbjct: 1 MPPVPREKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG 60
Query: 61 LTLGAGQQAGCAQRLMAHLAKLLPGAGKPEASGQQAAARKDSDNSAWE 108
LTLGAGQQAGCAQRLMAHLAKLLPGAGKPEASGQQAAARKDSDNSAWE
Sbjct: 61 LTLGAGQQAGCAQRLMAHLAKLLPGAGKPEASGQQAAARKDSDNSAWE 108
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 41.6 bits (96), Expect = 1e-04
Identities = 27/70 (38%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 10 GANGQGQGKGFKGEESSGKCPGGAGGW--------CGGRTAVSRVKVLRAGGSGGGGRGL 61
G++G G G G S G C GG+ G CGG + S VK GGS GGG G
Sbjct: 45 GSSGSGCGYSGGGGYSGGGCGGGSSGGGGGGGIGGCGGGSGGS-VKYSGGGGSSGGGSGC 103
Query: 62 TLGAGQQAGC 71
G +GC
Sbjct: 104 FSSGGGGSGC 113
Score = 34.3 bits (77), Expect = 0.022
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 3 PVPREKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGS-------G 55
P P G++G G G G G SSG GG+ G GG + + ++ GGS G
Sbjct: 221 PQPSYGGGSSGGG-GSGGSGCFSSGG-GGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSG 278
Query: 56 GGGRGLTLG 64
GGG G ++G
Sbjct: 279 GGGGGSSVG 287
Score = 30.4 bits (67), Expect = 0.32
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 10 GANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG-LTLGAGQQ 68
G++G G G G SG G GG GG + GGS GGG G + G G
Sbjct: 95 GSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFS---SGGGGSSGGGSGCFSSGGGGF 151
Query: 69 AGCAQRLMAH 78
+G A + ++
Sbjct: 152 SGQAVQCQSY 161
Score = 28.9 bits (63), Expect = 0.93
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 2 PPVPREK-AGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG 60
PPV K +G G G G G G C GG GG ++ S GG GGG G
Sbjct: 12 PPVDCVKTSGGGGGGGGSG------GGGCGFFGGGGSGGGSSGSGCGYSGGGGYSGGGCG 65
Score = 28.9 bits (63), Expect = 0.93
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 10 GANGQGQG-----KGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG-LTL 63
G++G G G G SG G GG+ G + +GGS GGG G +
Sbjct: 120 GSSGGGSGCFSSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGGSGCFSS 179
Query: 64 GAGQQAGC 71
G G + C
Sbjct: 180 GGGGGSVC 187
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 17/67 (25%)
Query: 10 GANGQGQGKGFKGEE-----SSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLG 64
G + G G G+ + S P GG GG GGSGG G + G
Sbjct: 198 GGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGG------------GGSGGSGCFSSGG 245
Query: 65 AGQQAGC 71
G +GC
Sbjct: 246 GGGSSGC 252
Score = 26.6 bits (57), Expect = 4.6
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 10 GANGQG-QGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAGQQ 68
G +GQ Q + + G S G GG+G + G S V GGSG GG G + G+G
Sbjct: 150 GFSGQAVQCQSYGGVSSGGSSGGGSGCFSSGGGGGS-VCGYSGGGSGCGG-GSSGGSGSG 207
Query: 69 AGCAQRLMAHLAKLLPGAGKPEASG 93
+Q++ P G + G
Sbjct: 208 YVSSQQVTQTSCAPQPSYGGGSSGG 232
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 39.7 bits (91), Expect = 5e-04
Identities = 27/72 (37%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 1 MPPVPREKAGANGQGQ--GKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGG 58
MPP + + G G+G G G G G GG GGW GG GG GGGG
Sbjct: 322 MPPWQKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGG--------WGGGGGGG 373
Query: 59 RGLTLGAGQQAG 70
G G G G
Sbjct: 374 GGWGGGGGGGRG 385
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 10 GANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAG 66
G G G+G GF+G G G GG+ G R GG GGGG G G G
Sbjct: 378 GGGGGGRG-GFQGRGDYG----GRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGGGGG 429
Score = 25.8 bits (55), Expect = 7.9
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 12/50 (24%)
Query: 10 GANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGR 59
G G G+G G G GG GG GG GG GGG R
Sbjct: 394 GGRGGYGGRGGYGGRGYGDPYGGGGGGGGG------------GGGGGGYR 431
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 38.5 bits (88), Expect = 0.001
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 10 GANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAGQQA 69
G G G G G G S GG GG GG + + + GSGGGG G++ G G
Sbjct: 74 GGGGGGGGSGGGGGSSGN---GGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGG--- 127
Query: 70 GCAQRLMAHLAKLLPGAGKPEASGQQAAARKDSDNSA 106
+A + G +S +++ S +S+
Sbjct: 128 ------VASSTPINASTGSSSSSSSSSSSSSSSSSSS 158
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 38.5 bits (88), Expect = 0.001
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 10 GANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAGQQA 69
G G G G G G S GG GG GG + + + GSGGGG G++ G G
Sbjct: 74 GGGGGGGGSGGGGGSSGN---GGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGG--- 127
Query: 70 GCAQRLMAHLAKLLPGAGKPEASGQQAAARKDSDNSA 106
+A + G +S +++ S +S+
Sbjct: 128 ------VASSTPINASTGSSSSSSSSSSSSSSSSSSS 158
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 38.5 bits (88), Expect = 0.001
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 10 GANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAGQQA 69
G G G G G G S GG GG GG + + + GSGGGG G++ G G
Sbjct: 74 GGGGGGGGSGGGGGSSGN---GGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGG--- 127
Query: 70 GCAQRLMAHLAKLLPGAGKPEASGQQAAARKDSDNSA 106
+A + G +S +++ S +S+
Sbjct: 128 ------VASSTPINASTGSSSSSSSSSSSSSSSSSSS 158
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 37.4 bits (85), Expect = 0.003
Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 1/93 (1%)
Query: 5 PREKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLG 64
P G G G G G G G G G G A + AGG GGGG G +
Sbjct: 246 PGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGS-S 304
Query: 65 AGQQAGCAQRLMAHLAKLLPGAGKPEASGQQAA 97
AG + R + PG G + + AA
Sbjct: 305 AGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAA 337
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 37.4 bits (85), Expect = 0.003
Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 1/93 (1%)
Query: 5 PREKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLG 64
P G G G G G G G G G G A + AGG GGGG G +
Sbjct: 246 PGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGS-S 304
Query: 65 AGQQAGCAQRLMAHLAKLLPGAGKPEASGQQAA 97
AG + R + PG G + + AA
Sbjct: 305 AGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAA 337
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 37.4 bits (85), Expect = 0.003
Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 1/93 (1%)
Query: 5 PREKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLG 64
P G G G G G G G G G G A + AGG GGGG G +
Sbjct: 246 PGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGS-S 304
Query: 65 AGQQAGCAQRLMAHLAKLLPGAGKPEASGQQAA 97
AG + R + PG G + + AA
Sbjct: 305 AGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAA 337
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 37.0 bits (84), Expect = 0.003
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 12/53 (22%)
Query: 6 REKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGG 58
R + G+G+G+G S G GG GG CGG GGSGGGG
Sbjct: 80 RGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGG------------GGSGGGG 120
Score = 30.0 bits (66), Expect = 0.42
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 4 VPREKAGANGQGQGKGFKGEESSGKCPGGAGGWCG---GRTAVSRVKVLRAGGSGGGGRG 60
V RE A G+G+G+ + G C G G G GR +GGSG GG G
Sbjct: 49 VRREGARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDG 108
Query: 61 LTLGAGQQAG 70
G G G
Sbjct: 109 GGCGGGGSGG 118
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 37.0 bits (84), Expect = 0.003
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 12/53 (22%)
Query: 6 REKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGG 58
R + G+G+G+G S G GG GG CGG GGSGGGG
Sbjct: 80 RGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGG------------GGSGGGG 120
Score = 30.0 bits (66), Expect = 0.42
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 4 VPREKAGANGQGQGKGFKGEESSGKCPGGAGGWCG---GRTAVSRVKVLRAGGSGGGGRG 60
V RE A G+G+G+ + G C G G G GR +GGSG GG G
Sbjct: 49 VRREGARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDG 108
Query: 61 LTLGAGQQAG 70
G G G
Sbjct: 109 GGCGGGGSGG 118
>gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 37.0 bits (84), Expect = 0.003
Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 8 KAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGA-- 65
+ G N G G GF SS GG GG GG R GG GG GRG G
Sbjct: 8 RGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGN--------FRGGGRGGFGRGGGRGGFN 59
Query: 66 -GQQAGCAQRLM 76
GQ G +R++
Sbjct: 60 KGQDQGPPERVV 71
Score = 35.0 bits (79), Expect = 0.013
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 1 MPPVPREKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG 60
+P P EK G G+G G G+ G GG+ GGR GG GGG RG
Sbjct: 158 LPRPPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGR-----------GGGGGGFRG 206
Score = 28.9 bits (63), Expect = 0.93
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 19/51 (37%)
Query: 10 GANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG 60
G G G+G GF+G GG GG+ GGR GGG RG
Sbjct: 183 GGRGGGRGGGFRGGRG-----GGGGGFRGGR--------------GGGFRG 214
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 50 RAGGSGGGGRGLTLGAGQQAG 70
R GG GGGGRG G G + G
Sbjct: 176 RGGGRGGGGRGGGRGGGFRGG 196
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 31 GGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAG 66
GG GG GGR R GG GGG RG G G
Sbjct: 171 GGRGGRGGGRGGGGR-----GGGRGGGFRGGRGGGG 201
>gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 37.0 bits (84), Expect = 0.003
Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 8 KAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGA-- 65
+ G N G G GF SS GG GG GG R GG GG GRG G
Sbjct: 8 RGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGN--------FRGGGRGGFGRGGGRGGFN 59
Query: 66 -GQQAGCAQRLM 76
GQ G +R++
Sbjct: 60 KGQDQGPPERVV 71
Score = 35.0 bits (79), Expect = 0.013
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 1 MPPVPREKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG 60
+P P EK G G+G G G+ G GG+ GGR GG GGG RG
Sbjct: 158 LPRPPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGR-----------GGGGGGFRG 206
Score = 28.9 bits (63), Expect = 0.93
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 19/51 (37%)
Query: 10 GANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG 60
G G G+G GF+G GG GG+ GGR GGG RG
Sbjct: 183 GGRGGGRGGGFRGGRG-----GGGGGFRGGR--------------GGGFRG 214
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 50 RAGGSGGGGRGLTLGAGQQAG 70
R GG GGGGRG G G + G
Sbjct: 176 RGGGRGGGGRGGGRGGGFRGG 196
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 31 GGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAG 66
GG GG GGR R GG GGG RG G G
Sbjct: 171 GGRGGRGGGRGGGGR-----GGGRGGGFRGGRGGGG 201
>gi|33620755 YEATS domain containing 2 [Homo sapiens]
Length = 1422
Score = 35.0 bits (79), Expect = 0.013
Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 23/95 (24%)
Query: 9 AGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAGQQ 68
A + G G G G G G GG G GG GG+ GGG T G G
Sbjct: 796 AASGGSGAGGGGGGGGGGGSGSGGGGSTGGG------------GGTAGGGTQSTAGPG-- 841
Query: 69 AGCAQRL--MAHLAKLLP------GAGKPEASGQQ 95
G +Q L +++ K P G P+ SG+Q
Sbjct: 842 -GISQHLTYTSYILKQTPQGTFLVGQPSPQTSGKQ 875
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 34.7 bits (78), Expect = 0.017
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 8 KAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAGQ 67
K G + +G G G +G GG GG+ GGR + GG GGGG G G G
Sbjct: 2 KPGFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGG---GGGG 58
Query: 68 QAG 70
+ G
Sbjct: 59 RGG 61
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 34.7 bits (78), Expect = 0.017
Identities = 33/113 (29%), Positives = 40/113 (35%), Gaps = 15/113 (13%)
Query: 3 PVPREKAGANGQGQGKGFKGEESSGKCPGGAGGWCG----------GRTAVSRVKVLRAG 52
P P GANG G G PGG GG G A + AG
Sbjct: 202 PNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAG 261
Query: 53 G---SGGGGRGLTLGAGQQAGCAQRLMAHLAKLLPGAGKPEASGQQAAARKDS 102
G +GG G+G G G L A +L +P +G +AA K S
Sbjct: 262 GLAAAGGPGQGWAPGPGPITSIPDSLGGPFASVLSSLQRP--NGAKAALVKSS 312
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 34.3 bits (77), Expect = 0.022
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 23 EESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAGQQAGCAQRLMAHLAKL 82
++ G GG GG GG GG GGGG G + G G G A + KL
Sbjct: 60 DKPKGAGAGGGGGGFGGGGGF--------GGGGGGGGGGSFGGGGPPGLGGLFQAGMPKL 111
Query: 83 LPGAGKPEASG 93
A + SG
Sbjct: 112 RSTANRDNDSG 122
Score = 28.5 bits (62), Expect = 1.2
Identities = 26/68 (38%), Positives = 28/68 (41%), Gaps = 17/68 (25%)
Query: 3 PVPREKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLT 62
P+ + GA G G GF G G GG GG GG GGS GGG
Sbjct: 57 PILDKPKGAGAGGGGGGFGGGGGFG---GGGGG--GG------------GGSFGGGGPPG 99
Query: 63 LGAGQQAG 70
LG QAG
Sbjct: 100 LGGLFQAG 107
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 34.3 bits (77), Expect = 0.022
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 23 EESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAGQQAGCAQRLMAHLAKL 82
++ G GG GG GG GG GGGG G + G G G A + KL
Sbjct: 60 DKPKGAGAGGGGGGFGGGGGF--------GGGGGGGGGGSFGGGGPPGLGGLFQAGMPKL 111
Query: 83 LPGAGKPEASG 93
A + SG
Sbjct: 112 RSTANRDNDSG 122
Score = 28.5 bits (62), Expect = 1.2
Identities = 26/68 (38%), Positives = 28/68 (41%), Gaps = 17/68 (25%)
Query: 3 PVPREKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLT 62
P+ + GA G G GF G G GG GG GG GGS GGG
Sbjct: 57 PILDKPKGAGAGGGGGGFGGGGGFG---GGGGG--GG------------GGSFGGGGPPG 99
Query: 63 LGAGQQAG 70
LG QAG
Sbjct: 100 LGGLFQAG 107
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 33.9 bits (76), Expect = 0.029
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 10 GANGQGQGKGFKGEESSGK-CPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLG---A 65
G G G G + + K C G GG + K++ AGG GGG A
Sbjct: 179 GGGGGASGGGANSKPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAASFA 238
Query: 66 GQQAGCAQRLMAHLA---KLLPGAGKPEASGQQAAARKDS 102
+QAG A L A L A P AS ++A S
Sbjct: 239 AEQAGAAALLPLGAAADHHSLYKARTPSASASASSAASAS 278
>gi|194018511 keratin 77 [Homo sapiens]
Length = 578
Score = 33.9 bits (76), Expect = 0.029
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 13 GQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG 60
G G G+ ++G + G+ GG G CGG GGSG GRG
Sbjct: 518 GYGGGRSYRGGGARGRSGGGYGSGCGGGGG-------SYGGSGRSGRG 558
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 22 GEESSGKCP-GGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAG 66
G +SG C GG GG+ GGR V AGG GGGG G GAG
Sbjct: 76 GRSTSGFCQGGGVGGFGGGRG--FGVGSTGAGGFGGGGFG---GAG 116
Score = 29.6 bits (65), Expect = 0.55
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 4 VPREKAGANGQGQGKGFKGEESSGKCPGGAGGWCGG----RTAVSRVKVLRAGGSGGGGR 59
V + NG G G G SG GG+GG GG R +R + GSG GG
Sbjct: 489 VQNSQVSVNG---GAGGGGSYGSGGYGGGSGGGYGGGRSYRGGGARGRSGGGYGSGCGGG 545
Query: 60 GLTLGAGQQAG 70
G + G ++G
Sbjct: 546 GGSYGGSGRSG 556
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 33.9 bits (76), Expect = 0.029
Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 10 GANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAGQQA 69
G+ G G G G G SSG GG GG GG + G SGGG G G G +
Sbjct: 467 GSFGGGYGGGSSGGGSSG---GGHGGGHGGSSGGG----YGGGSSGGGSSGGGYGGGSSS 519
Query: 70 G 70
G
Sbjct: 520 G 520
Score = 33.1 bits (74), Expect = 0.049
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 21 KGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGG 58
K SS GG GG CGG VS +++ + GS GGG
Sbjct: 9 KHYSSSRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGG 46
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 10 GANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGG---GGRGLTLGAG 66
G +G G G+ G S G G +GG GG ++ +GG GG GG G G G
Sbjct: 489 GGHGGSSGGGYGGGSSGG---GSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGG 545
Query: 67 QQAG 70
G
Sbjct: 546 SSGG 549
Score = 30.8 bits (68), Expect = 0.25
Identities = 23/63 (36%), Positives = 25/63 (39%), Gaps = 11/63 (17%)
Query: 10 GANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGG--RGLTLGAGQ 67
G G G G G SSG GG+ G GG GGS GGG G G G
Sbjct: 511 GGYGGGSSSGGHGGSSSGGYGGGSSGGGGGG---------YGGGSSGGGSSSGGGYGGGS 561
Query: 68 QAG 70
+G
Sbjct: 562 SSG 564
Score = 29.6 bits (65), Expect = 0.55
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 13/61 (21%)
Query: 10 GANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAGQQA 69
G++G G G G G GG GG +GG GGG G + G G +
Sbjct: 507 GSSGGGYGGGSSSGGHGGSSSGGYGGG-------------SSGGGGGGYGGGSSGGGSSS 553
Query: 70 G 70
G
Sbjct: 554 G 554
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 10 GANGQGQGKGFKGEESSGKCPGGA--GGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAG 66
G G G +G G S G GG+ GG GG + GG GGGG G G G
Sbjct: 78 GGFGGGSFRGSYGSSSFGGSYGGSFGGGSFGGGSFGGGS--FGGGGFGGGGFGGGFGGG 134
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 12/61 (19%)
Query: 10 GANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAGQQA 69
G++G G G G G G G +GG G GG GGG G
Sbjct: 481 GSSGGGHGGGHGGSSGGGYGGGSSGGGSSG------------GGYGGGSSSGGHGGSSSG 528
Query: 70 G 70
G
Sbjct: 529 G 529
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 12/52 (23%)
Query: 9 AGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG 60
+G +G G+ G G GG GG+ GG + G S GGG G
Sbjct: 519 SGGHGGSSSGGYGG----GSSGGGGGGYGGGSSG--------GGSSSGGGYG 558
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 11 ANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSG--GGGRGLTLGAGQQ 68
++G G F S G C GG+ G GG + GS GG G + G G
Sbjct: 48 SSGGFSGGSFSRGSSGGGCFGGSSGGYGGLGGFGGGSFRGSYGSSSFGGSYGGSFGGGSF 107
Query: 69 AG 70
G
Sbjct: 108 GG 109
Score = 25.8 bits (55), Expect = 7.9
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 21 KGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAGQQAG 70
+GE SSG G G + GG S GG G GG G + G G G
Sbjct: 454 EGEGSSGGGGRGGGSFGGGYGGGSSGGGSSGGGHG-GGHGGSSGGGYGGG 502
>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
sapiens]
Length = 898
Score = 33.9 bits (76), Expect = 0.029
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 1 MPPVP----REKAGA-NGQGQGKGFKGEESSGKCPGGAG----GWCGGRTAVSRVKVL-- 49
+PP P R + G+ G+G+G+GF G G GAG G+ GG +A +
Sbjct: 637 VPPPPNLRGRGRGGSIRGRGRGRGFGGANHGGYMNAGAGYGSYGY-GGNSATAGYSQFYS 695
Query: 50 ------RAGGSGGGGRGLTLGAG 66
A G GGGG G + G G
Sbjct: 696 NGGHSGNASGGGGGGGGGSSGYG 718
Score = 25.8 bits (55), Expect = 7.9
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 2 PPVPREKAGANGQGQGKGFKGEESSGKCPG------------GAGGWCGGRTAVSRVKVL 49
PP ++K +GQG S G G G+GG GG + S
Sbjct: 773 PPQGKQKGYNHGQGSYSYSNSYNSPGGGGGSDYNYESKFNYSGSGGRSGGNSYGSGGASY 832
Query: 50 RA---GGSGGGGRGLTLGAGQQAGCAQ 73
GG GGG G + G+Q G +Q
Sbjct: 833 NPGSHGGYGGGSGGGSSYQGKQGGYSQ 859
>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
sapiens]
Length = 894
Score = 33.9 bits (76), Expect = 0.029
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 1 MPPVP----REKAGA-NGQGQGKGFKGEESSGKCPGGAG----GWCGGRTAVSRVKVL-- 49
+PP P R + G+ G+G+G+GF G G GAG G+ GG +A +
Sbjct: 633 VPPPPNLRGRGRGGSIRGRGRGRGFGGANHGGYMNAGAGYGSYGY-GGNSATAGYSQFYS 691
Query: 50 ------RAGGSGGGGRGLTLGAG 66
A G GGGG G + G G
Sbjct: 692 NGGHSGNASGGGGGGGGGSSGYG 714
Score = 25.8 bits (55), Expect = 7.9
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 2 PPVPREKAGANGQGQGKGFKGEESSGKCPG------------GAGGWCGGRTAVSRVKVL 49
PP ++K +GQG S G G G+GG GG + S
Sbjct: 769 PPQGKQKGYNHGQGSYSYSNSYNSPGGGGGSDYNYESKFNYSGSGGRSGGNSYGSGGASY 828
Query: 50 RA---GGSGGGGRGLTLGAGQQAGCAQ 73
GG GGG G + G+Q G +Q
Sbjct: 829 NPGSHGGYGGGSGGGSSYQGKQGGYSQ 855
>gi|154091020 leucine-rich repeats and calponin homology (CH)
domain containing 2 [Homo sapiens]
Length = 765
Score = 33.9 bits (76), Expect = 0.029
Identities = 23/51 (45%), Positives = 23/51 (45%), Gaps = 12/51 (23%)
Query: 10 GANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG 60
G G G G G SSG C G AGG GG AGG GGGG G
Sbjct: 6 GGGGNSGGGGCGGGGSSGGC-GTAGGGGGG-----------AGGGGGGGGG 44
Score = 25.8 bits (55), Expect = 7.9
Identities = 13/36 (36%), Positives = 14/36 (38%)
Query: 25 SSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRG 60
S G GG CGG + GG G GG G
Sbjct: 4 SQGGGGNSGGGGCGGGGSSGGCGTAGGGGGGAGGGG 39
>gi|13775236 scratch [Homo sapiens]
Length = 348
Score = 33.9 bits (76), Expect = 0.029
Identities = 28/96 (29%), Positives = 34/96 (35%), Gaps = 13/96 (13%)
Query: 3 PVPREKAGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLT 62
P A +G G G G S G PGG GG G +R G +G GGR
Sbjct: 137 PSTASAAAPDGDAGGGGGAGGRSLGSGPGGRGGTRAGAGTEARA---GPGAAGAGGRHAC 193
Query: 63 LGAGQQAGCAQRLMAH----------LAKLLPGAGK 88
G+ + L H LA+ P GK
Sbjct: 194 GECGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGK 229
>gi|153791670 keratin 76 [Homo sapiens]
Length = 638
Score = 33.5 bits (75), Expect = 0.038
Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 11 ANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAGQQAG 70
A G + GF G SS GG GG GG GG GGGRG+ G G G
Sbjct: 72 AAGSSRAGGFGGGRSSCGFAGGYGGGFGG----------SYGGGFGGGRGVGSGFGGAGG 121
Score = 31.2 bits (69), Expect = 0.19
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 10 GANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAGQQA 69
G G G GF G G GGAGG+ GG V GS GG G G G
Sbjct: 96 GGFGGSYGGGFGGGRGVGSGFGGAGGF-GGAGGFGGPGVFGGPGSFGGPGG--FGPGGFP 152
Query: 70 GCAQRLMAHLAKLLP 84
G Q ++ + + L P
Sbjct: 153 GGIQEVIVNQSLLQP 167
Score = 30.4 bits (67), Expect = 0.32
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 10 GANGQGQGKGFKGEESSGKCPG-----GAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLG 64
G +G G G G+KG SS G G+G GG ++ S GG G G +
Sbjct: 528 GVSGSGSG-GYKGGSSSSSSSGYGVSGGSGSGYGGVSSGS------TGGRGSSGSYQSSS 580
Query: 65 AGQQAGCAQRLMAHLAKLLPGAGKPEASG 93
+G + G A + + + +G + SG
Sbjct: 581 SGSRLGGAGSISVSHSGMGSSSGSIQTSG 609
Score = 28.9 bits (63), Expect = 0.93
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 9 AGANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGA-GQ 67
+G++G +G F G SG +GG+ GG ++ S +GGSG G G++ G+ G
Sbjct: 516 SGSSGSSRGV-FGGVSGSG-----SGGYKGGSSSSSSSGYGVSGGSGSGYGGVSSGSTGG 569
Query: 68 QAGCAQRLMAHLAKLLPGAGKPEAS 92
+ + L GAG S
Sbjct: 570 RGSSGSYQSSSSGSRLGGAGSISVS 594
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 39 GRTAV----SRVK-VLRAGGSGGGGRGLTLGAG 66
GR+AV SR+ V R+GG+GGG G GAG
Sbjct: 19 GRSAVVSGSSRMSCVARSGGAGGGACGFRSGAG 51
Score = 26.9 bits (58), Expect = 3.5
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 8 KAGANGQGQGK-GFKGEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGG----GGRGLT 62
+AG G G+ GF G G GG+ GGR S AGG GG GG G+
Sbjct: 77 RAGGFGGGRSSCGFAGGYGGGFGGSYGGGFGGGRGVGSGFG--GAGGFGGAGGFGGPGVF 134
Query: 63 LGAGQQAG 70
G G G
Sbjct: 135 GGPGSFGG 142
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 33.5 bits (75), Expect = 0.038
Identities = 30/79 (37%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 10 GANGQGQGKGFKGEESSGKCPGGAGGWCGGRTAVS--------RVKVLRAGGSG-GGGRG 60
G + G G G +G PGG GG GG A S V + AGG G GGG G
Sbjct: 60 GGSAAATGAGGAGAYGTGG-PGGPGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGGG 118
Query: 61 LTLGAGQ-QAGCAQRLMAH 78
+ GAG A R+ AH
Sbjct: 119 SSGGAGALSAAGVIRVPAH 137
>gi|154759423 Cdk5 and Abl enzyme substrate 1 isoform 2 [Homo
sapiens]
Length = 633
Score = 33.5 bits (75), Expect = 0.038
Identities = 28/78 (35%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 22 GEESSGKCPGGAGGWCGGRTAVSRVKVLRAGGSGGGGRGLTLGAGQQAGCAQRL--MAHL 79
G E G GAGG CG RT S + GG T AG AG L + L
Sbjct: 87 GGEEGGAAKPGAGGACGARTRFSLLAAAERGGCIALAAPGTPAAGLAAGSGPCLPQPSSL 146
Query: 80 AKLLPGAGKPEASGQQAA 97
L+PG G SG A
Sbjct: 147 PPLIPG-GHATVSGPGVA 163
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.133 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,528,871
Number of Sequences: 37866
Number of extensions: 310779
Number of successful extensions: 3258
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 249
Number of HSP's that attempted gapping in prelim test: 1937
Number of HSP's gapped (non-prelim): 1102
length of query: 108
length of database: 18,247,518
effective HSP length: 78
effective length of query: 30
effective length of database: 15,293,970
effective search space: 458819100
effective search space used: 458819100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.