Guide to the Human Genome
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Name: LOC100289015 Sequence: fasta or formatted (108aa) NCBI GI: 239746784
Description:

PREDICTED: hypothetical protein XP_002343849

Not currently referenced in the text

Other entries for this name:
alt mRNA {108aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.8         16           3
 C cysteine            2.8          3           1
 D aspartate           1.9          2           1
 E glutamate           4.6          5           2
 F phenylalanine       0.9          1           1
 G glycine            24.1         26           4
 H histidine           0.9          1           1
 I isoleucine          0.0          0           0
 K lysine              7.4          8           1
 L leucine             6.5          7           2
 M methionine          1.9          2           1
 N asparagine          1.9          2           1
 P proline             5.6          6           2
 Q glutamine           6.5          7           2
 R arginine            6.5          7           1
 S serine              6.5          7           2
 T threonine           1.9          2           1
 V valine              3.7          4           1
 W tryptophan          1.9          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343849 
LOC100291906          1.000   PREDICTED: hypothetical protein XP_002346331 
LOC100289015          1.000   PREDICTED: hypothetical protein 
LOR                   0.085   loricrin 
FAM98B                0.075   family with sequence similarity 98, member B isofor...
DACH1                 0.070   dachshund homolog 1 isoform b 
DACH1                 0.070   dachshund homolog 1 isoform a 
DACH1                 0.070   dachshund homolog 1 isoform c 
ARID1B                0.060   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.060   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.060   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
MBD2                  0.060   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.060   methyl-CpG binding domain protein 2 isoform 1 
GAR1                  0.060   nucleolar protein family A, member 1 
GAR1                  0.060   nucleolar protein family A, member 1 
YEATS2                0.050   YEATS domain containing 2 
FBL                   0.050   fibrillarin 
PHOX2B                0.050   paired-like homeobox 2b 
WIPF1                 0.045   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.045   WAS/WASL interacting protein family, member 1 
SOX4                  0.045   SRY (sex determining region Y)-box 4 
KRT77                 0.045   keratin 77 
KRT10                 0.045   keratin 10 
ILF3                  0.045   interleukin enhancer binding factor 3 isoform d [Ho...
ILF3                  0.045   interleukin enhancer binding factor 3 isoform a [Hom...
LRCH2                 0.045   leucine-rich repeats and calponin homology (CH) dom...
SCRT1                 0.045   scratch 
KRT76                 0.040   keratin 76 
TLX1                  0.040   T-cell leukemia homeobox 1 
CABLES1               0.040   Cdk5 and Abl enzyme substrate 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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