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Search of human proteins with 239746465
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746465 PREDICTED: hypothetical protein XP_002344255 [Homo
sapiens]
(271 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746465 PREDICTED: hypothetical protein XP_002344255 [Homo ... 552 e-157
gi|239757462 PREDICTED: hypothetical protein XP_002345445 [Homo ... 409 e-114
gi|239758158 PREDICTED: hypothetical protein [Homo sapiens] 319 2e-87
gi|239743829 PREDICTED: hypothetical protein XP_002344304 [Homo ... 319 2e-87
gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sap... 36 0.031
gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sap... 36 0.031
gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo ... 33 0.20
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 33 0.20
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 33 0.20
gi|190014615 hypothetical protein LOC157983 [Homo sapiens] 33 0.20
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 33 0.34
gi|19718780 semaphorin 6B precursor [Homo sapiens] 32 0.59
gi|229892270 WD repeats and SOF1 domain containing [Homo sapiens] 32 0.77
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 32 0.77
gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo ... 31 1.0
gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo ... 31 1.0
gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo ... 31 1.0
gi|116292168 KRAB A domain containing 1 [Homo sapiens] 31 1.0
gi|40353729 Ras and Rab interactor 3 [Homo sapiens] 31 1.3
gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo sap... 30 1.7
gi|41352705 kinesin family member 3C [Homo sapiens] 30 1.7
gi|90193619 nuclear matrix transcription factor 4 isoform c [Hom... 30 2.2
gi|90193617 nuclear matrix transcription factor 4 isoform b [Hom... 30 2.2
gi|90193615 nuclear matrix transcription factor 4 isoform b [Hom... 30 2.2
gi|90193613 nuclear matrix transcription factor 4 isoform a [Hom... 30 2.2
gi|90193611 nuclear matrix transcription factor 4 isoform a [Hom... 30 2.2
gi|36054194 nuclear matrix transcription factor 4 isoform a [Hom... 30 2.2
gi|209180475 nuclear matrix transcription factor 4 isoform d [Ho... 30 2.2
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 30 2.2
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 30 2.2
>gi|239746465 PREDICTED: hypothetical protein XP_002344255 [Homo
sapiens]
Length = 271
Score = 552 bits (1423), Expect = e-157
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MSLSILICVINQYRGNAQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGS 60
MSLSILICVINQYRGNAQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGS
Sbjct: 1 MSLSILICVINQYRGNAQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGS 60
Query: 61 SAREAAPLCTGARNRGPASVQPRQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPP 120
SAREAAPLCTGARNRGPASVQPRQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPP
Sbjct: 61 SAREAAPLCTGARNRGPASVQPRQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPP 120
Query: 121 ELQDPALHLGSLEHELARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRS 180
ELQDPALHLGSLEHELARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRS
Sbjct: 121 ELQDPALHLGSLEHELARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRS 180
Query: 181 KHSLTAYVCPEPASVFTQTVNARDFHFQVSAGRGGGGGAGGESPPEAQVLTVAGLPGALW 240
KHSLTAYVCPEPASVFTQTVNARDFHFQVSAGRGGGGGAGGESPPEAQVLTVAGLPGALW
Sbjct: 181 KHSLTAYVCPEPASVFTQTVNARDFHFQVSAGRGGGGGAGGESPPEAQVLTVAGLPGALW 240
Query: 241 NLLSLEMRAGDGPRGGGKRLRLPSPACGGAS 271
NLLSLEMRAGDGPRGGGKRLRLPSPACGGAS
Sbjct: 241 NLLSLEMRAGDGPRGGGKRLRLPSPACGGAS 271
>gi|239757462 PREDICTED: hypothetical protein XP_002345445 [Homo
sapiens]
Length = 259
Score = 409 bits (1052), Expect = e-114
Identities = 201/204 (98%), Positives = 201/204 (98%)
Query: 15 GNAQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGSSAREAAPLCTGARN 74
GNAQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGSSAREAAPLCTGARN
Sbjct: 11 GNAQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGSSAREAAPLCTGARN 70
Query: 75 RGPASVQPRQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPPELQDPALHLGSLEH 134
R PASVQ RQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPPELQDPALHLGSLEH
Sbjct: 71 RRPASVQHRQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPPELQDPALHLGSLEH 130
Query: 135 ELARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSLTAYVCPEPAS 194
ELARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSLTAYVCPEPAS
Sbjct: 131 ELARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSLTAYVCPEPAS 190
Query: 195 VFTQTVNARDFHFQVSAGRGGGGG 218
VFTQTVNARDFHFQVSAGRGGG G
Sbjct: 191 VFTQTVNARDFHFQVSAGRGGGAG 214
>gi|239758158 PREDICTED: hypothetical protein [Homo sapiens]
Length = 230
Score = 319 bits (817), Expect = 2e-87
Identities = 156/177 (88%), Positives = 165/177 (93%)
Query: 10 INQYRGNAQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGSSAREAAPLC 69
I + R AQYL+VQSTSGKSASRGLERCL+GPKLVGTG RVTRPSILFPGSSA+EAAPLC
Sbjct: 54 ITEARRKAQYLHVQSTSGKSASRGLERCLKGPKLVGTGSRVTRPSILFPGSSAQEAAPLC 113
Query: 70 TGARNRGPASVQPRQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPPELQDPALHL 129
TGAR GPAS+QPRQGQSEAWEATKPAL TASTGFAGVEC+RKELRRLPPELQDPALHL
Sbjct: 114 TGARKGGPASIQPRQGQSEAWEATKPALRITASTGFAGVECVRKELRRLPPELQDPALHL 173
Query: 130 GSLEHELARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSLTA 186
GSLEH+L RLHIR+LGHGSGRLLRG+AEAGSGRVCDLEQHQG EEQKWRRSKHS TA
Sbjct: 174 GSLEHKLGRLHIRILGHGSGRLLRGEAEAGSGRVCDLEQHQGGEEQKWRRSKHSRTA 230
>gi|239743829 PREDICTED: hypothetical protein XP_002344304 [Homo
sapiens]
Length = 259
Score = 319 bits (817), Expect = 2e-87
Identities = 156/177 (88%), Positives = 165/177 (93%)
Query: 10 INQYRGNAQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGSSAREAAPLC 69
I + R AQYL+VQSTSGKSASRGLERCL+GPKLVGTG RVTRPSILFPGSSA+EAAPLC
Sbjct: 83 ITEARRKAQYLHVQSTSGKSASRGLERCLKGPKLVGTGSRVTRPSILFPGSSAQEAAPLC 142
Query: 70 TGARNRGPASVQPRQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPPELQDPALHL 129
TGAR GPAS+QPRQGQSEAWEATKPAL TASTGFAGVEC+RKELRRLPPELQDPALHL
Sbjct: 143 TGARKGGPASIQPRQGQSEAWEATKPALRITASTGFAGVECVRKELRRLPPELQDPALHL 202
Query: 130 GSLEHELARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSLTA 186
GSLEH+L RLHIR+LGHGSGRLLRG+AEAGSGRVCDLEQHQG EEQKWRRSKHS TA
Sbjct: 203 GSLEHKLGRLHIRILGHGSGRLLRGEAEAGSGRVCDLEQHQGGEEQKWRRSKHSRTA 259
>gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo
sapiens]
Length = 2603
Score = 36.2 bits (82), Expect = 0.031
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 147 GSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSLTAYVCPEPASVFTQTVNARDFH 206
GS R + G RVCDL + +Q+ ++K + T C P+S +++ + D
Sbjct: 41 GSSRARSASSPRGMVRVCDLLLKKKPPQQQHHKAKRNRT---CRPPSS--SESSSDSDNS 95
Query: 207 FQVSAGRGGGGGAGGES 223
G GGGGG GG S
Sbjct: 96 GGGGGGGGGGGGGGGTS 112
>gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo
sapiens]
Length = 2352
Score = 36.2 bits (82), Expect = 0.031
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 147 GSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSLTAYVCPEPASVFTQTVNARDFH 206
GS R + G RVCDL + +Q+ ++K + T C P+S +++ + D
Sbjct: 41 GSSRARSASSPRGMVRVCDLLLKKKPPQQQHHKAKRNRT---CRPPSS--SESSSDSDNS 95
Query: 207 FQVSAGRGGGGGAGGES 223
G GGGGG GG S
Sbjct: 96 GGGGGGGGGGGGGGGTS 112
>gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo
sapiens]
Length = 402
Score = 33.5 bits (75), Expect = 0.20
Identities = 59/224 (26%), Positives = 77/224 (34%), Gaps = 59/224 (26%)
Query: 33 GLERCLRGPKLVGTGPRVTRPSILFPGSSAREAAPLCTGARNRGPASVQPRQGQS---EA 89
G + LR +G PR G SA +A +R PA R+G S E+
Sbjct: 101 GPPKSLRISVTLGQAPRA--------GPSAASSAAAGKTPPSRVPAEPSSRRGASKRRES 152
Query: 90 WEATKPAL-----CTTASTG-FAGVECIRK-----------ELRRLPPELQ-------DP 125
W L C A+ G A ++ R+ E RRL P + P
Sbjct: 153 WRTDGERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSPGP 212
Query: 126 ALHLGSLEHELARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSLT 185
L S +E R GR G A A +G GR+ W +
Sbjct: 213 PLQRSSSLNETLR----------GRRPPGPAPAAAGATRGTAAPPGRDPSAWFLD----S 258
Query: 186 AYVCPEPASVFTQTVNARDFHFQVS---AGRGGGGGAGGESPPE 226
A CP P + AR +H V+ GRG G G G P E
Sbjct: 259 ASACPTPLA-------ARSWHPFVANKLCGRGKGAGGGASRPKE 295
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 33.5 bits (75), Expect = 0.20
Identities = 56/232 (24%), Positives = 78/232 (33%), Gaps = 52/232 (22%)
Query: 39 RGPKLVGTGPRVTRPSILFPGSSAREAAPLCTGARN-----------------RGPASVQ 81
RG ++ R T P L AR A LC + RG +
Sbjct: 54 RGVEVASGRTRWTGPQPLVDTPPARRAGELCEAPQTAPGFHFQPFLSLSPHQERGRSKPS 113
Query: 82 P-----RQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPP-ELQDPALHLGSLEHE 135
P R+G++ W+ + + T A + PP L P H G
Sbjct: 114 PPVSGTRRGKTGQWKEGRGSHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRH-GPHPQS 172
Query: 136 LARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKW-RRSKHSL-----TAYVC 189
R G GSGR+ RGQ E+Q W +RS H L A +
Sbjct: 173 FRRPSAHPPGRGSGRVPRGQP----------------EQQAWEQRSSHFLAPEGSVASLL 216
Query: 190 P--EPASVFTQTVNARDFHFQVSAGRGG----GGGAGGESPPEAQVLTVAGL 235
P +PA AR+ S GRGG + PP A++L + +
Sbjct: 217 PSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARGSAQQPPLARLLLASAV 268
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 33.5 bits (75), Expect = 0.20
Identities = 56/232 (24%), Positives = 78/232 (33%), Gaps = 52/232 (22%)
Query: 39 RGPKLVGTGPRVTRPSILFPGSSAREAAPLCTGARN-----------------RGPASVQ 81
RG ++ R T P L AR A LC + RG +
Sbjct: 54 RGVEVASGRTRWTGPQPLVDTPPARRAGELCEAPQTAPGFHFQPFLSLSPHQERGRSKPS 113
Query: 82 P-----RQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPP-ELQDPALHLGSLEHE 135
P R+G++ W+ + + T A + PP L P H G
Sbjct: 114 PPVSGTRRGKTGQWKEGRGSHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRH-GPHPQS 172
Query: 136 LARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKW-RRSKHSL-----TAYVC 189
R G GSGR+ RGQ E+Q W +RS H L A +
Sbjct: 173 FRRPSAHPPGRGSGRVPRGQP----------------EQQAWEQRSSHFLAPEGSVASLL 216
Query: 190 P--EPASVFTQTVNARDFHFQVSAGRGG----GGGAGGESPPEAQVLTVAGL 235
P +PA AR+ S GRGG + PP A++L + +
Sbjct: 217 PSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARGSAQQPPLARLLLASAV 268
>gi|190014615 hypothetical protein LOC157983 [Homo sapiens]
Length = 295
Score = 33.5 bits (75), Expect = 0.20
Identities = 43/146 (29%), Positives = 54/146 (36%), Gaps = 12/146 (8%)
Query: 132 LEHELARLHIRVLGHGSGRLL-----RGQAEAGSGRVCDLEQHQGREEQKWRRSKHSLTA 186
LE E A L R GHG + RG G R +H RS +A
Sbjct: 126 LERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSALETSA 185
Query: 187 YVCPEPASVFTQT-VNARDFHFQVSAGRGGGGGAGGESPPEAQVLTVAG----LPGALWN 241
+ +P S + + D + A R G GG GG P G LPGA +
Sbjct: 186 FPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAA-D 244
Query: 242 LLSLEMRAGD-GPRGGGKRLRLPSPA 266
L RA D P G++L LP A
Sbjct: 245 LRPKGARADDRRPLRAGRKLHLPEAA 270
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 32.7 bits (73), Expect = 0.34
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 15/48 (31%)
Query: 210 SAGRGGGGGAGGESPPEAQVLTVAGLPGALWNLLSLEMRAGDGPRGGG 257
+ G GG GGAGG PP G PGA R G GP GGG
Sbjct: 17 AGGGGGAGGAGGGPPP--------GPPGA-------GDRGGGGPGGGG 49
>gi|19718780 semaphorin 6B precursor [Homo sapiens]
Length = 888
Score = 32.0 bits (71), Expect = 0.59
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 172 REEQKWRRSKHSLTAYVCPEPASVFTQTVNARDFHFQVSAGRGGGGGAGGESPPEA 227
R E R+ K ++ A+ E ++ R Q GRGGGGG G PPEA
Sbjct: 627 RRELARRKDKEAILAHGAGEAVLSVSRLGERRA---QGPGGRGGGGGGGAGVPPEA 679
>gi|229892270 WD repeats and SOF1 domain containing [Homo sapiens]
Length = 597
Score = 31.6 bits (70), Expect = 0.77
Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 13/130 (10%)
Query: 39 RGPKLVGTGPRVTRPSILFP------GSSAREAAPLCTGARNRGPASVQPRQGQSEAWEA 92
R P + T P +L P G S+ E A TG R+ + +G+S+ +
Sbjct: 9 RSPLVSATPPPGPTRGLLCPRRVSEAGDSSTEGAR--TGHRHYVTPAESAMEGRSQPLPS 66
Query: 93 TKPALCTTASTGFAGVECIRKELRRLPPELQDPALHLGSLEHELARLHIRVLGHGSGRLL 152
+PA T A G +C KE PP + G+ + + R H +G L
Sbjct: 67 LRPASPTNAPAHGRGSDCTAKE----PPLANVCRQNYGAAQDPVEPAGRRSASHVTGSSL 122
Query: 153 RGQAEAGSGR 162
G+AE GR
Sbjct: 123 -GKAEVACGR 131
>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
sapiens]
Length = 1309
Score = 31.6 bits (70), Expect = 0.77
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 208 QVSAGRGGGGGAGGESPPEAQVLTVA-------GLPGALWNLLSLEMRAGDGPRGGGKRL 260
+ S+ G GGG+GG P A V ++ G G L + LS + +
Sbjct: 878 RASSSGGSGGGSGGRVPKSASVSALSLIITADDGSGGPLMSPLSPRSLSSNPSSRDSSPS 937
Query: 261 RLPSPACG 268
R PSP CG
Sbjct: 938 RDPSPVCG 945
>gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo
sapiens]
Length = 307
Score = 31.2 bits (69), Expect = 1.0
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 45 GTGPRVTRPSILFPGSSAREAAPLCTGARNR-GPASVQPRQGQSEAWEATKPALCTTAST 103
G+GPRV + +L PG R ++P G+R + G QG + A EA +
Sbjct: 150 GSGPRVPQVRLLGPG--GRPSSPARDGSRRKAGHGCTSQSQGDAVAMEA--------EAR 199
Query: 104 GFAGVECIRKELRRLPPE 121
G G + +EL LP E
Sbjct: 200 GSPGGRVLMQELTLLPVE 217
>gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo
sapiens]
Length = 325
Score = 31.2 bits (69), Expect = 1.0
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 45 GTGPRVTRPSILFPGSSAREAAPLCTGARNR-GPASVQPRQGQSEAWEATKPALCTTAST 103
G+GPRV + +L PG R ++P G+R + G QG + A EA +
Sbjct: 168 GSGPRVPQVRLLGPG--GRPSSPARDGSRRKAGHGCTSQSQGDAVAMEA--------EAR 217
Query: 104 GFAGVECIRKELRRLPPE 121
G G + +EL LP E
Sbjct: 218 GSPGGRVLMQELTLLPVE 235
>gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo
sapiens]
Length = 325
Score = 31.2 bits (69), Expect = 1.0
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 45 GTGPRVTRPSILFPGSSAREAAPLCTGARNR-GPASVQPRQGQSEAWEATKPALCTTAST 103
G+GPRV + +L PG R ++P G+R + G QG + A EA +
Sbjct: 168 GSGPRVPQVRLLGPG--GRPSSPARDGSRRKAGHGCTSQSQGDAVAMEA--------EAR 217
Query: 104 GFAGVECIRKELRRLPPE 121
G G + +EL LP E
Sbjct: 218 GSPGGRVLMQELTLLPVE 235
>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
Length = 1030
Score = 31.2 bits (69), Expect = 1.0
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 18/99 (18%)
Query: 24 STSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGSSAREAAPLCTGARNRGPASVQPR 83
S G S +GLE CL+ P R A P C+ A +RGP +PR
Sbjct: 493 SPPGSSPLQGLENCLKE----------------IPVPVLRPAWP-CSSAADRGPRRAEPR 535
Query: 84 QGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPPEL 122
++ E + C +A G E + L + P++
Sbjct: 536 NWTADK-EGLRAEACESARLGQGRGEAPTRSLHLVSPQV 573
>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
Length = 985
Score = 30.8 bits (68), Expect = 1.3
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 203 RDFHFQVSAGRGGGGGAGGESP 224
RDFHF GGGGG GG P
Sbjct: 954 RDFHFVYRPLDGGGGGGGGSPP 975
>gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo
sapiens]
Length = 254
Score = 30.4 bits (67), Expect = 1.7
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 8/115 (6%)
Query: 22 VQSTSGKSASRGLERCLRGPKLV---GTGPRVTRPSILFPGSSAREAAPLC-TGARNRGP 77
++ ++ +A + R P V GP P++++P ++ AA LC P
Sbjct: 2 IKFSTRAAAKTSVRRPAAAPAAVRPPAAGPPAAAPAVVYPAAAGPSAASLCAANPLVPAP 61
Query: 78 ASVQPRQGQSEAWEATKPALCTTASTGFAGVEC-IRKELRRLPPELQDPALHLGS 131
A+V+P AT PA+ A+ G + L P ++ PA LG+
Sbjct: 62 AAVRPPVAGP---PATAPAVVCPAAAGPSAASLRAANPLAVAPAAVRRPAATLGA 113
>gi|41352705 kinesin family member 3C [Homo sapiens]
Length = 793
Score = 30.4 bits (67), Expect = 1.7
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 212 GRGGGGGAGGESPPEAQVLTVAGLPGALWNLLS--LEMRAGDGPRGGGKRLRLPSPACGG 269
G G GGGAGGE P EA + ++ AL N+++ R+ P K RL + GG
Sbjct: 275 GGGSGGGAGGERPKEASKINLS--LSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGG 332
>gi|90193619 nuclear matrix transcription factor 4 isoform c [Homo
sapiens]
Length = 461
Score = 30.0 bits (66), Expect = 2.2
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 98 CTTASTGFAGVECIRKELRRL-PPELQDPALHLGSLEHELARLHIRVLGHGSGRLLRGQA 156
CT S + + K +R+ PP+LQ + + +A+ + + + QA
Sbjct: 319 CTICSRAYTSETYLMKHMRKHNPPDLQQQ-VQAAAAAAAVAQAQAQAQAQAQAQA-QAQA 376
Query: 157 EAGSGRVCDLEQHQGREEQKWRRSKHSLTAYVCPEPASVFTQTVNARDFHFQV--SAGRG 214
+A + + +Q Q +++Q+ ++ P P HFQ +A +G
Sbjct: 377 QAQASQASQQQQQQQQQQQQQQQQ---------PPP-------------HFQSPGAAPQG 414
Query: 215 GGGGAGGESPP 225
GGGG +PP
Sbjct: 415 GGGGDSNPNPP 425
>gi|90193617 nuclear matrix transcription factor 4 isoform b [Homo
sapiens]
Length = 500
Score = 30.0 bits (66), Expect = 2.2
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 98 CTTASTGFAGVECIRKELRRL-PPELQDPALHLGSLEHELARLHIRVLGHGSGRLLRGQA 156
CT S + + K +R+ PP+LQ + + +A+ + + + QA
Sbjct: 358 CTICSRAYTSETYLMKHMRKHNPPDLQQQ-VQAAAAAAAVAQAQAQAQAQAQAQA-QAQA 415
Query: 157 EAGSGRVCDLEQHQGREEQKWRRSKHSLTAYVCPEPASVFTQTVNARDFHFQV--SAGRG 214
+A + + +Q Q +++Q+ ++ P P HFQ +A +G
Sbjct: 416 QAQASQASQQQQQQQQQQQQQQQQ---------PPP-------------HFQSPGAAPQG 453
Query: 215 GGGGAGGESPP 225
GGGG +PP
Sbjct: 454 GGGGDSNPNPP 464
>gi|90193615 nuclear matrix transcription factor 4 isoform b [Homo
sapiens]
Length = 500
Score = 30.0 bits (66), Expect = 2.2
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 98 CTTASTGFAGVECIRKELRRL-PPELQDPALHLGSLEHELARLHIRVLGHGSGRLLRGQA 156
CT S + + K +R+ PP+LQ + + +A+ + + + QA
Sbjct: 358 CTICSRAYTSETYLMKHMRKHNPPDLQQQ-VQAAAAAAAVAQAQAQAQAQAQAQA-QAQA 415
Query: 157 EAGSGRVCDLEQHQGREEQKWRRSKHSLTAYVCPEPASVFTQTVNARDFHFQV--SAGRG 214
+A + + +Q Q +++Q+ ++ P P HFQ +A +G
Sbjct: 416 QAQASQASQQQQQQQQQQQQQQQQ---------PPP-------------HFQSPGAAPQG 453
Query: 215 GGGGAGGESPP 225
GGGG +PP
Sbjct: 454 GGGGDSNPNPP 464
>gi|90193613 nuclear matrix transcription factor 4 isoform a [Homo
sapiens]
Length = 516
Score = 30.0 bits (66), Expect = 2.2
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 98 CTTASTGFAGVECIRKELRRL-PPELQDPALHLGSLEHELARLHIRVLGHGSGRLLRGQA 156
CT S + + K +R+ PP+LQ + + +A+ + + + QA
Sbjct: 374 CTICSRAYTSETYLMKHMRKHNPPDLQQQ-VQAAAAAAAVAQAQAQAQAQAQAQA-QAQA 431
Query: 157 EAGSGRVCDLEQHQGREEQKWRRSKHSLTAYVCPEPASVFTQTVNARDFHFQV--SAGRG 214
+A + + +Q Q +++Q+ ++ P P HFQ +A +G
Sbjct: 432 QAQASQASQQQQQQQQQQQQQQQQ---------PPP-------------HFQSPGAAPQG 469
Query: 215 GGGGAGGESPP 225
GGGG +PP
Sbjct: 470 GGGGDSNPNPP 480
>gi|90193611 nuclear matrix transcription factor 4 isoform a [Homo
sapiens]
Length = 516
Score = 30.0 bits (66), Expect = 2.2
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 98 CTTASTGFAGVECIRKELRRL-PPELQDPALHLGSLEHELARLHIRVLGHGSGRLLRGQA 156
CT S + + K +R+ PP+LQ + + +A+ + + + QA
Sbjct: 374 CTICSRAYTSETYLMKHMRKHNPPDLQQQ-VQAAAAAAAVAQAQAQAQAQAQAQA-QAQA 431
Query: 157 EAGSGRVCDLEQHQGREEQKWRRSKHSLTAYVCPEPASVFTQTVNARDFHFQV--SAGRG 214
+A + + +Q Q +++Q+ ++ P P HFQ +A +G
Sbjct: 432 QAQASQASQQQQQQQQQQQQQQQQ---------PPP-------------HFQSPGAAPQG 469
Query: 215 GGGGAGGESPP 225
GGGG +PP
Sbjct: 470 GGGGDSNPNPP 480
>gi|36054194 nuclear matrix transcription factor 4 isoform a [Homo
sapiens]
Length = 516
Score = 30.0 bits (66), Expect = 2.2
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 98 CTTASTGFAGVECIRKELRRL-PPELQDPALHLGSLEHELARLHIRVLGHGSGRLLRGQA 156
CT S + + K +R+ PP+LQ + + +A+ + + + QA
Sbjct: 374 CTICSRAYTSETYLMKHMRKHNPPDLQQQ-VQAAAAAAAVAQAQAQAQAQAQAQA-QAQA 431
Query: 157 EAGSGRVCDLEQHQGREEQKWRRSKHSLTAYVCPEPASVFTQTVNARDFHFQV--SAGRG 214
+A + + +Q Q +++Q+ ++ P P HFQ +A +G
Sbjct: 432 QAQASQASQQQQQQQQQQQQQQQQ---------PPP-------------HFQSPGAAPQG 469
Query: 215 GGGGAGGESPP 225
GGGG +PP
Sbjct: 470 GGGGDSNPNPP 480
>gi|209180475 nuclear matrix transcription factor 4 isoform d [Homo
sapiens]
Length = 577
Score = 30.0 bits (66), Expect = 2.2
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 98 CTTASTGFAGVECIRKELRRL-PPELQDPALHLGSLEHELARLHIRVLGHGSGRLLRGQA 156
CT S + + K +R+ PP+LQ + + +A+ + + + QA
Sbjct: 435 CTICSRAYTSETYLMKHMRKHNPPDLQQQ-VQAAAAAAAVAQAQAQAQAQAQAQA-QAQA 492
Query: 157 EAGSGRVCDLEQHQGREEQKWRRSKHSLTAYVCPEPASVFTQTVNARDFHFQV--SAGRG 214
+A + + +Q Q +++Q+ ++ P P HFQ +A +G
Sbjct: 493 QAQASQASQQQQQQQQQQQQQQQQ---------PPP-------------HFQSPGAAPQG 530
Query: 215 GGGGAGGESPP 225
GGGG +PP
Sbjct: 531 GGGGDSNPNPP 541
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 30.0 bits (66), Expect = 2.2
Identities = 40/168 (23%), Positives = 52/168 (30%), Gaps = 4/168 (2%)
Query: 27 GKSASRGLERCLRGPKLVGTGPRVTRPSILFP-GSSAREAAPLCTGARNRGPASVQPRQG 85
GK G E + G G + R P G AREAA TG R R P + PR
Sbjct: 175 GKGEGGGKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPA 234
Query: 86 QSEAWEATKPALCTTASTGFAGVECIRKELRRLPPELQDPALHLGSLEHELARLHIRVLG 145
A P + + G + V E + R+ G
Sbjct: 235 LP---SAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGG 291
Query: 146 HGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSLTAYVCPEPA 193
G+GR R + R E GR + W P+PA
Sbjct: 292 RGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESPDPA 339
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 30.0 bits (66), Expect = 2.2
Identities = 40/168 (23%), Positives = 52/168 (30%), Gaps = 4/168 (2%)
Query: 27 GKSASRGLERCLRGPKLVGTGPRVTRPSILFP-GSSAREAAPLCTGARNRGPASVQPRQG 85
GK G E + G G + R P G AREAA TG R R P + PR
Sbjct: 175 GKGEGGGKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPA 234
Query: 86 QSEAWEATKPALCTTASTGFAGVECIRKELRRLPPELQDPALHLGSLEHELARLHIRVLG 145
A P + + G + V E + R+ G
Sbjct: 235 LP---SAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGG 291
Query: 146 HGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSLTAYVCPEPA 193
G+GR R + R E GR + W P+PA
Sbjct: 292 RGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESPDPA 339
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,073,230
Number of Sequences: 37866
Number of extensions: 715496
Number of successful extensions: 4435
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 4181
Number of HSP's gapped (non-prelim): 272
length of query: 271
length of database: 18,247,518
effective HSP length: 101
effective length of query: 170
effective length of database: 14,423,052
effective search space: 2451918840
effective search space used: 2451918840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.