Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239746441
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746441 PREDICTED: hypothetical protein XP_002344223 [Homo
sapiens]
(205 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751958 PREDICTED: hypothetical protein [Homo sapiens] 403 e-113
gi|239746441 PREDICTED: hypothetical protein XP_002344223 [Homo ... 403 e-113
gi|239757441 PREDICTED: hypothetical protein [Homo sapiens] 327 3e-90
gi|30089980 chordin [Homo sapiens] 32 0.38
gi|106879210 Src homology 2 domain containing adaptor protein B ... 31 0.84
gi|169161002 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|169162097 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|169161240 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|30348954 mindbomb homolog 1 [Homo sapiens] 30 1.1
gi|239752797 PREDICTED: hypothetical protein [Homo sapiens] 29 2.4
gi|239747322 PREDICTED: hypothetical protein XP_002346421 [Homo ... 29 2.4
gi|239745962 PREDICTED: hypothetical protein XP_002343626 [Homo ... 29 2.4
gi|239741144 PREDICTED: hypothetical protein XP_002342119 [Homo ... 29 2.4
gi|124430752 kinesin family member 26B [Homo sapiens] 29 2.4
gi|169201741 PREDICTED: hypothetical protein [Homo sapiens] 29 3.2
gi|169201345 PREDICTED: hypothetical protein [Homo sapiens] 29 3.2
gi|169188544 PREDICTED: hypothetical protein [Homo sapiens] 29 3.2
gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens] 29 3.2
gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens] 29 3.2
gi|134288906 tripartite motif-containing 67 [Homo sapiens] 29 3.2
gi|126090909 engrailed homeobox 1 [Homo sapiens] 28 5.5
gi|242247193 SH2B adaptor protein 2 [Homo sapiens] 28 5.5
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ... 28 5.5
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ... 28 5.5
gi|68989256 ras inhibitor RIN1 [Homo sapiens] 28 5.5
gi|11119430 testis-specific kinase substrate [Homo sapiens] 28 5.5
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 28 5.5
gi|30387654 late cornified envelope 1A [Homo sapiens] 28 5.5
gi|30387648 late cornified envelope 1D [Homo sapiens] 28 7.1
gi|145580590 hepatitis C virus F protein-binding protein 2 [Homo... 28 7.1
>gi|239751958 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 403 bits (1036), Expect = e-113
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MALTQASKAGILLVCGCQLALQKGCQFFRCLFEKRAARMGTVHVQVQVLLGGARVAAILA 60
MALTQASKAGILLVCGCQLALQKGCQFFRCLFEKRAARMGTVHVQVQVLLGGARVAAILA
Sbjct: 1 MALTQASKAGILLVCGCQLALQKGCQFFRCLFEKRAARMGTVHVQVQVLLGGARVAAILA 60
Query: 61 DVELVPPLLIGILLLHPMDFLQVEGVVEALAAEGAQVSFHLVVALEVTVQHALQTEALAT 120
DVELVPPLLIGILLLHPMDFLQVEGVVEALAAEGAQVSFHLVVALEVTVQHALQTEALAT
Sbjct: 61 DVELVPPLLIGILLLHPMDFLQVEGVVEALAAEGAQVSFHLVVALEVTVQHALQTEALAT 120
Query: 121 QVTAVNHRVAARACVVLTLRGALPFPRPCSGAPRTTGTASCVAAVALLQEVVRRVPAAGC 180
QVTAVNHRVAARACVVLTLRGALPFPRPCSGAPRTTGTASCVAAVALLQEVVRRVPAAGC
Sbjct: 121 QVTAVNHRVAARACVVLTLRGALPFPRPCSGAPRTTGTASCVAAVALLQEVVRRVPAAGC 180
Query: 181 CGGASGQGCPGAQGSPNSQPHLSVT 205
CGGASGQGCPGAQGSPNSQPHLSVT
Sbjct: 181 CGGASGQGCPGAQGSPNSQPHLSVT 205
>gi|239746441 PREDICTED: hypothetical protein XP_002344223 [Homo
sapiens]
Length = 205
Score = 403 bits (1036), Expect = e-113
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MALTQASKAGILLVCGCQLALQKGCQFFRCLFEKRAARMGTVHVQVQVLLGGARVAAILA 60
MALTQASKAGILLVCGCQLALQKGCQFFRCLFEKRAARMGTVHVQVQVLLGGARVAAILA
Sbjct: 1 MALTQASKAGILLVCGCQLALQKGCQFFRCLFEKRAARMGTVHVQVQVLLGGARVAAILA 60
Query: 61 DVELVPPLLIGILLLHPMDFLQVEGVVEALAAEGAQVSFHLVVALEVTVQHALQTEALAT 120
DVELVPPLLIGILLLHPMDFLQVEGVVEALAAEGAQVSFHLVVALEVTVQHALQTEALAT
Sbjct: 61 DVELVPPLLIGILLLHPMDFLQVEGVVEALAAEGAQVSFHLVVALEVTVQHALQTEALAT 120
Query: 121 QVTAVNHRVAARACVVLTLRGALPFPRPCSGAPRTTGTASCVAAVALLQEVVRRVPAAGC 180
QVTAVNHRVAARACVVLTLRGALPFPRPCSGAPRTTGTASCVAAVALLQEVVRRVPAAGC
Sbjct: 121 QVTAVNHRVAARACVVLTLRGALPFPRPCSGAPRTTGTASCVAAVALLQEVVRRVPAAGC 180
Query: 181 CGGASGQGCPGAQGSPNSQPHLSVT 205
CGGASGQGCPGAQGSPNSQPHLSVT
Sbjct: 181 CGGASGQGCPGAQGSPNSQPHLSVT 205
>gi|239757441 PREDICTED: hypothetical protein [Homo sapiens]
Length = 167
Score = 327 bits (839), Expect = 3e-90
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 39 MGTVHVQVQVLLGGARVAAILADVELVPPLLIGILLLHPMDFLQVEGVVEALAAEGAQVS 98
MGTVHVQVQVLLGGARVAAILADVELVPPLLIGILLLHPMDFLQVEGVVEALAAEGAQVS
Sbjct: 1 MGTVHVQVQVLLGGARVAAILADVELVPPLLIGILLLHPMDFLQVEGVVEALAAEGAQVS 60
Query: 99 FHLVVALEVTVQHALQTEALATQVTAVNHRVAARACVVLTLRGALPFPRPCSGAPRTTGT 158
FHLVVALEVTVQHALQTEALATQVTAVNHRVAARACVVLTLRGALPFPRPCSGAPRTTGT
Sbjct: 61 FHLVVALEVTVQHALQTEALATQVTAVNHRVAARACVVLTLRGALPFPRPCSGAPRTTGT 120
Query: 159 ASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPHLSVT 205
ASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPHLSVT
Sbjct: 121 ASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPHLSVT 167
>gi|30089980 chordin [Homo sapiens]
Length = 955
Score = 32.0 bits (71), Expect = 0.38
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 28 FRCLFEKRAARMGTVHVQVQVLLGGARVAAILADVELVPPLLIGI---LLLHPMDFL--- 81
FR L E R+ + V +++Q+L G + + A+V P + L + MD+L
Sbjct: 318 FRGLLEPRSGGLTQVPLRLQILHQGQLLRELQANVSAQEPGFAEVLPNLTVQEMDWLVLG 377
Query: 82 QVEGVVEALAAEGAQVSFHLVVALEVTVQHALQTEALATQVTAVNHRVAARACVVLTLRG 141
+++ +E G ++S H+ V ++ A A + V A A + L G
Sbjct: 378 ELQMALEWAGRPGLRISGHIAARKSCDVLQSVLCGADA--LIPVQTGAAGSASLTLLGNG 435
Query: 142 ALPFPRPCSGAPRTTGTASCVAAVALLQEVVRRVPAAGCC-------GGASGQG-CPG 191
+L + + GT+S V A+ L + RR C GG + G CPG
Sbjct: 436 SLIY------QVQVVGTSSEVVAMTLETKPQRRDQRTVLCHMAGLQPGGHTAVGICPG 487
>gi|106879210 Src homology 2 domain containing adaptor protein B
[Homo sapiens]
Length = 509
Score = 30.8 bits (68), Expect = 0.84
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 177 AAGCCGGASGQGCPGAQGSPNSQPHL 202
AAGCC +SG G + S + PHL
Sbjct: 136 AAGCCCASSGAGAAASSSSSSGSPHL 161
>gi|169161002 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 30.4 bits (67), Expect = 1.1
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 82 QVEGVVEALAAEGAQVSFHLVVALEVTVQHALQTEALATQVTAVNHRVAARAC-VVLTLR 140
QV + E LAA GA++ ++A + Q EA +T T V R+ AR C +V R
Sbjct: 64 QVGALPETLAASGARMWPLALMAAPMAQQRGTLAEAASTVATCV--RLLARVCALVAHQR 121
Query: 141 GAL 143
GAL
Sbjct: 122 GAL 124
>gi|169162097 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 30.4 bits (67), Expect = 1.1
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 82 QVEGVVEALAAEGAQVSFHLVVALEVTVQHALQTEALATQVTAVNHRVAARAC-VVLTLR 140
QV + E LAA GA++ ++A + Q EA +T T V R+ AR C +V R
Sbjct: 64 QVGALPETLAASGARMWPLALMAAPMAQQRGTLAEAASTVATCV--RLLARVCALVAHQR 121
Query: 141 GAL 143
GAL
Sbjct: 122 GAL 124
>gi|169161240 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 30.4 bits (67), Expect = 1.1
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 82 QVEGVVEALAAEGAQVSFHLVVALEVTVQHALQTEALATQVTAVNHRVAARAC-VVLTLR 140
QV + E LAA GA++ ++A + Q EA +T T V R+ AR C +V R
Sbjct: 64 QVGALPETLAASGARMWPLALMAAPMAQQRGTLAEAASTVATCV--RLLARVCALVAHQR 121
Query: 141 GAL 143
GAL
Sbjct: 122 GAL 124
>gi|30348954 mindbomb homolog 1 [Homo sapiens]
Length = 1006
Score = 30.4 bits (67), Expect = 1.1
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 125 VNHRVAARACVVLTLRGALPFPRPCSGAPRTTGTASCVAAVALLQEVV-RRVPAAGCCGG 183
V R CVV + + A +PC A+ + + VV RRVP CCGG
Sbjct: 857 VQSRTKIEECVVCSDKKAAVLFQPCGHMCACENCANLMKKCVQCRAVVERRVPFIMCCGG 916
Query: 184 ASGQ 187
S +
Sbjct: 917 KSSE 920
>gi|239752797 PREDICTED: hypothetical protein [Homo sapiens]
Length = 347
Score = 29.3 bits (64), Expect = 2.4
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 151 GAPRTTGTASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPH 201
G R G A V L +EV + AA GA +GCPGAQ ++Q H
Sbjct: 164 GGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGA--EGCPGAQRPFHAQDH 212
>gi|239747322 PREDICTED: hypothetical protein XP_002346421 [Homo
sapiens]
Length = 347
Score = 29.3 bits (64), Expect = 2.4
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 151 GAPRTTGTASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPH 201
G R G A V L +EV + AA GA +GCPGAQ ++Q H
Sbjct: 164 GGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGA--EGCPGAQRPFHAQDH 212
>gi|239745962 PREDICTED: hypothetical protein XP_002343626 [Homo
sapiens]
Length = 398
Score = 29.3 bits (64), Expect = 2.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 166 ALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPHLSVT 205
++ ++ RR G G +GC GA G P P L++T
Sbjct: 313 SMFTDMARRGAGPGVSGRTQTRGCAGAGGRPPGAPGLALT 352
>gi|239741144 PREDICTED: hypothetical protein XP_002342119 [Homo
sapiens]
Length = 347
Score = 29.3 bits (64), Expect = 2.4
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 151 GAPRTTGTASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPH 201
G R G A V L +EV + AA GA +GCPGAQ ++Q H
Sbjct: 164 GGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGA--EGCPGAQRPFHAQDH 212
>gi|124430752 kinesin family member 26B [Homo sapiens]
Length = 2108
Score = 29.3 bits (64), Expect = 2.4
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 131 ARACVVLTLRGALPFPRPCSGAPRTTGTASCVAAVALLQEVVRRVPAAGCCGGASGQGCP 190
++ C V T +G LP P P + + +G AS +LLQ VR P
Sbjct: 1086 SQRCKVYTQKGVLPSPAPLPPSSKDSGVAS---RESLLQPEVRTPPVGMSPQVLKKSMSA 1142
Query: 191 GAQGSPNS 198
G++G P +
Sbjct: 1143 GSEGFPET 1150
>gi|169201741 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 28.9 bits (63), Expect = 3.2
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 141 GALPFPRPCSGAPRTTGTASCVAA--------VALLQEVVRR---VPAAGCCGG-ASGQG 188
GAL PR G+ R G A+ A V +E +R +PAAG G A G+G
Sbjct: 53 GALTLPRKPPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRG 112
Query: 189 CPGAQGSPNSQP 200
C A+GS P
Sbjct: 113 CCTAEGSSCGHP 124
>gi|169201345 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 28.9 bits (63), Expect = 3.2
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 141 GALPFPRPCSGAPRTTGTASCVAA--------VALLQEVVRR---VPAAGCCGG-ASGQG 188
GAL PR G+ R G A+ A V +E +R +PAAG G A G+G
Sbjct: 53 GALTLPRKPPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRG 112
Query: 189 CPGAQGSPNSQP 200
C A+GS P
Sbjct: 113 CCTAEGSSCGHP 124
>gi|169188544 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 28.9 bits (63), Expect = 3.2
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 141 GALPFPRPCSGAPRTTGTASCVAA--------VALLQEVVRR---VPAAGCCGG-ASGQG 188
GAL PR G+ R G A+ A V +E +R +PAAG G A G+G
Sbjct: 53 GALTLPRKPPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRG 112
Query: 189 CPGAQGSPNSQP 200
C A+GS P
Sbjct: 113 CCTAEGSSCGHP 124
>gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 28.9 bits (63), Expect = 3.2
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 153 PRTTGTASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPHLSVT 205
P+ TG V + L+ +VP CCGGA G G + +P P L +T
Sbjct: 5 PKLTGETLIVHHIPLVH---CQVPDRQCCGGAGGGG-GSTRPNPFCPPELGIT 53
>gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 28.9 bits (63), Expect = 3.2
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 153 PRTTGTASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPHLSVT 205
P+ TG V + L+ +VP CCGGA G G + +P P L +T
Sbjct: 5 PKLTGETLIVHHIPLVH---CQVPDRQCCGGAGGGG-GSTRPNPFCPPELGIT 53
>gi|134288906 tripartite motif-containing 67 [Homo sapiens]
Length = 783
Score = 28.9 bits (63), Expect = 3.2
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 131 ARACVVLTLRGALPFPRPCSGAPRTTGTASCVAAVALLQEVVRRVPAAGCCGGASGQGCP 190
AR V T G P+P R +G + AA A L+ PA G GG++ G
Sbjct: 31 ARTIAVQTPDGEQHLPQPLL-LSRGSGLQAGAAAAASLEHDAAAGPACGGAGGSAAGGLG 89
Query: 191 GAQG 194
G G
Sbjct: 90 GGAG 93
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 28.1 bits (61), Expect = 5.5
Identities = 14/46 (30%), Positives = 18/46 (39%)
Query: 150 SGAPRTTGTASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGS 195
+G P A+ A A + G G G G PGAQG+
Sbjct: 195 AGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGT 240
>gi|242247193 SH2B adaptor protein 2 [Homo sapiens]
Length = 675
Score = 28.1 bits (61), Expect = 5.5
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 21/106 (19%)
Query: 115 TEALATQVTAVNHRVAARACVVLTLRGALPFPRPCSGAPRTTGTASCVAAV-----ALLQ 169
TE T+ + RVA+ +C +LT A+ PRP P TT + V A ++
Sbjct: 357 TELSCTRGGCLASRVASCSCELLT--DAVDLPRP----PETTAVGAVVTAPHSRGRDAVR 410
Query: 170 EVVRRVP----------AAGCCGGASGQGCPGAQGSPNSQPHLSVT 205
E + VP G ++ G GA+ P ++P L ++
Sbjct: 411 ESLIHVPLETFLQTLESPGGSGSDSNNTGEQGAETDPEAEPELELS 456
>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
sapiens]
Length = 258
Score = 28.1 bits (61), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 168 LQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQP 200
LQ ++ P GC G +G+G GSP++ P
Sbjct: 146 LQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAP 178
>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
sapiens]
Length = 258
Score = 28.1 bits (61), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 168 LQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQP 200
LQ ++ P GC G +G+G GSP++ P
Sbjct: 146 LQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAP 178
>gi|68989256 ras inhibitor RIN1 [Homo sapiens]
Length = 783
Score = 28.1 bits (61), Expect = 5.5
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 181 CGGASG---QGCPGAQGSPNSQPHL 202
CG S +G PG++GSP + PHL
Sbjct: 316 CGSPSSSEEEGVPGSRGSPATSPHL 340
>gi|11119430 testis-specific kinase substrate [Homo sapiens]
Length = 592
Score = 28.1 bits (61), Expect = 5.5
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 184 ASGQGCPGAQGSPN--SQPH 201
A+ QGCPG GSP+ S+PH
Sbjct: 277 ATSQGCPGPPGSPDKPSRPH 296
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 28.1 bits (61), Expect = 5.5
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 164 AVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPH 201
+V LQE+V VP G GG+ G G G G H
Sbjct: 3493 SVVNLQEMVLHVPTGGGGGGSGGGGGGGGGGGGGGSYH 3530
>gi|30387654 late cornified envelope 1A [Homo sapiens]
Length = 110
Score = 28.1 bits (61), Expect = 5.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 175 VPAAGCCGGASGQGCPGAQG 194
V + GCCG +SG GC G
Sbjct: 46 VSSGGCCGSSSGGGCSSGGG 65
>gi|30387648 late cornified envelope 1D [Homo sapiens]
Length = 114
Score = 27.7 bits (60), Expect = 7.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 175 VPAAGCCGGASGQGCPGAQG 194
V + GCCG +SG GC G
Sbjct: 42 VSSGGCCGSSSGGGCGSNSG 61
>gi|145580590 hepatitis C virus F protein-binding protein 2 [Homo
sapiens]
Length = 938
Score = 27.7 bits (60), Expect = 7.1
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 145 FPRPCSGAPRTTGTASCVAA--------VALLQEVVRRVPAAGCCG 182
FPRP P GT +CV A V L V++ AAG G
Sbjct: 369 FPRPIQSWPGAAGTTACVCADTVYYYQMVPRLTAVLQTAMAAGSLG 414
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,461,505
Number of Sequences: 37866
Number of extensions: 309948
Number of successful extensions: 2034
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2009
Number of HSP's gapped (non-prelim): 47
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.