Guide to the Human Genome
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Name: LOC100288322 Sequence: fasta or formatted (577aa) NCBI GI: 239746400
Description:

PREDICTED: hypothetical protein XP_002343703

Not currently referenced in the text

Other entries for this name:
alt mRNA {577aa} PREDICTED: similar to zinc finger protein 587
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         24           4
 C cysteine            6.6         38           2
 D aspartate           1.7         10           1
 E glutamate           8.1         47           2
 F phenylalanine       4.2         24           2
 G glycine             8.7         50           2
 H histidine           8.3         48           2
 I isoleucine          2.1         12           1
 K lysine              8.7         50           3
 L leucine             5.9         34           2
 M methionine          1.0          6           1
 N asparagine          1.9         11           1
 P proline             3.8         22           1
 Q glutamine           5.4         31           2
 R arginine            6.4         37           2
 S serine              9.7         56           3
 T threonine           4.3         25           2
 V valine              4.5         26           1
 W tryptophan          0.7          4           1
 Y tyrosine            3.8         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343703 
LOC100288322          1.000   PREDICTED: similar to zinc finger protein 587 [Homo...
LOC100293516          0.996   PREDICTED: similar to zinc finger protein 587 [Homo...
ZNF814                0.704   zinc finger protein 814 
ZNF418                0.662   zinc finger protein 418 
ZNF587                0.625   zinc finger protein 587 
ZNF417                0.620   zinc finger protein 417 
ZNF552                0.503   zinc finger protein 552 
ZNF256                0.500   zinc finger protein 256 
ZNF211                0.475   zinc finger protein 211 isoform 1 
ZNF211                0.474   zinc finger protein 211 isoform 2 
ZNF776                0.473   zinc finger protein 776 
ZNF530                0.460   zinc finger protein 530 
ZNF304                0.454   zinc finger protein 304 
ZNF132                0.448   zinc finger protein 132 
ZNF416                0.433   zinc finger protein 416 
ZNF17                 0.432   zinc finger protein 17 
ZNF551                0.427   zinc finger protein 551 
ZNF549                0.400   zinc finger protein 549 
ZNF792                0.397   zinc finger protein 792 
ZNF420                0.389   zinc finger protein 420 
ZNF30                 0.382   zinc finger protein 30 isoform b 
ZNF30                 0.379   zinc finger protein 30 isoform a 
ZNF30                 0.379   zinc finger protein 30 isoform a 
ZNF548                0.374   zinc finger protein 548 
ZNF749                0.374   zinc finger protein 749 
LOC100287429          0.369   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.369   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.369   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.369   zinc finger protein 84 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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