Guide to the Human Genome
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Name: LOC100293516 Sequence: fasta or formatted (577aa) NCBI GI: 239757378
Description:

PREDICTED: similar to zinc finger protein 587

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         24           4
 C cysteine            6.6         38           2
 D aspartate           1.7         10           1
 E glutamate           8.1         47           2
 F phenylalanine       4.2         24           2
 G glycine             8.7         50           2
 H histidine           8.3         48           2
 I isoleucine          2.1         12           1
 K lysine              8.7         50           3
 L leucine             5.9         34           2
 M methionine          1.2          7           1
 N asparagine          1.9         11           1
 P proline             3.8         22           1
 Q glutamine           5.4         31           2
 R arginine            6.4         37           2
 S serine              9.7         56           3
 T threonine           4.5         26           2
 V valine              4.2         24           1
 W tryptophan          0.7          4           1
 Y tyrosine            3.8         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to zinc finger protein 587 [Homo... 
LOC100288322          0.996   PREDICTED: similar to zinc finger protein 587 [Homo...
LOC100288322          0.996   PREDICTED: hypothetical protein XP_002343703 
ZNF814                0.708   zinc finger protein 814 
ZNF418                0.663   zinc finger protein 418 
ZNF587                0.626   zinc finger protein 587 
ZNF417                0.621   zinc finger protein 417 
ZNF552                0.507   zinc finger protein 552 
ZNF256                0.502   zinc finger protein 256 
ZNF211                0.476   zinc finger protein 211 isoform 1 
ZNF211                0.476   zinc finger protein 211 isoform 2 
ZNF776                0.476   zinc finger protein 776 
ZNF530                0.462   zinc finger protein 530 
ZNF304                0.456   zinc finger protein 304 
ZNF132                0.449   zinc finger protein 132 
ZNF416                0.436   zinc finger protein 416 
ZNF17                 0.435   zinc finger protein 17 
ZNF551                0.429   zinc finger protein 551 
ZNF792                0.400   zinc finger protein 792 
ZNF420                0.392   zinc finger protein 420 
ZNF30                 0.384   zinc finger protein 30 isoform b 
ZNF30                 0.382   zinc finger protein 30 isoform a 
ZNF30                 0.382   zinc finger protein 30 isoform a 
ZNF749                0.377   zinc finger protein 749 
ZNF548                0.377   zinc finger protein 548 
LOC100287429          0.372   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.372   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.372   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.372   zinc finger protein 84 
ZNF84                 0.372   zinc finger protein 84 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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