Guide to the Human Genome
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Name: ZNF549 Sequence: fasta or formatted (627aa) NCBI GI: 23397560
Description:

zinc finger protein 549

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         23           2
 C cysteine            5.7         36           1
 D aspartate           1.9         12           1
 E glutamate           9.3         58           2
 F phenylalanine       3.7         23           1
 G glycine             6.2         39           1
 H histidine           7.8         49           2
 I isoleucine          4.6         29           2
 K lysine              8.3         52           2
 L leucine             6.9         43           3
 M methionine          1.1          7           1
 N asparagine          2.7         17           1
 P proline             3.3         21           1
 Q glutamine           6.7         42           2
 R arginine            6.5         41           2
 S serine              7.0         44           2
 T threonine           4.8         30           2
 V valine              4.9         31           1
 W tryptophan          0.5          3           1
 Y tyrosine            4.3         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 549 
ZNF256                0.470   zinc finger protein 256 
ZNF304                0.460   zinc finger protein 304 
ZNF418                0.460   zinc finger protein 418 
ZNF551                0.454   zinc finger protein 551 
ZNF132                0.450   zinc finger protein 132 
ZNF530                0.446   zinc finger protein 530 
ZNF17                 0.434   zinc finger protein 17 
ZNF814                0.426   zinc finger protein 814 
ZNF416                0.400   zinc finger protein 416 
ZNF749                0.396   zinc finger protein 749 
ZNF420                0.395   zinc finger protein 420 
ZNF211                0.393   zinc finger protein 211 isoform 1 
ZNF211                0.393   zinc finger protein 211 isoform 2 
ZNF587                0.391   zinc finger protein 587 
ZNF135                0.391   zinc finger protein 135 
ZNF417                0.387   zinc finger protein 417 
ZNF184                0.380   zinc finger protein 184 
ZNF197                0.380   zinc finger protein 197 isoform 1 
LOC100287429          0.376   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.376   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.376   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.376   zinc finger protein 84 
ZNF84                 0.376   zinc finger protein 84 
ZNF534                0.369   zinc finger protein 534 isoform 1 
ZNF585B               0.368   zinc finger protein 585B 
ZNF268                0.368   zinc finger protein 268 
ZNF571                0.367   zinc finger protein 571 
ZNF546                0.367   zinc finger protein 546 
ZNF665                0.365   zinc finger protein 665 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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