Guide to the Human Genome
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Name: ZNF17 Sequence: fasta or formatted (662aa) NCBI GI: 115495000
Description:

zinc finger protein 17

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.4         16           1
 C cysteine            6.8         45           2
 D aspartate           3.0         20           1
 E glutamate           8.2         54           2
 F phenylalanine       5.4         36           2
 G glycine             6.6         44           2
 H histidine           8.3         55           1
 I isoleucine          3.3         22           2
 K lysine              7.1         47           1
 L leucine             6.0         40           2
 M methionine          1.2          8           1
 N asparagine          3.2         21           2
 P proline             3.2         21           1
 Q glutamine           5.4         36           3
 R arginine            7.6         50           2
 S serine              7.7         51           2
 T threonine           6.0         40           2
 V valine              4.4         29           2
 W tryptophan          0.5          3           1
 Y tyrosine            3.6         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 17 
ZNF749                0.595   zinc finger protein 749 
ZNF418                0.506   zinc finger protein 418 
ZNF132                0.483   zinc finger protein 132 
ZNF814                0.463   zinc finger protein 814 
ZNF551                0.460   zinc finger protein 551 
ZNF304                0.459   zinc finger protein 304 
ZNF420                0.450   zinc finger protein 420 
ZNF256                0.449   zinc finger protein 256 
ZNF665                0.437   zinc finger protein 665 
ZNF160                0.434   zinc finger protein 160 
ZNF160                0.434   zinc finger protein 160 
ZNF160                0.434   zinc finger protein 160 
ZNF184                0.432   zinc finger protein 184 
ZNF470                0.429   zinc finger protein 470 
ZNF569                0.429   zinc finger protein 569 
LOC100287429          0.429   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.429   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.429   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.429   zinc finger protein 84 
ZNF84                 0.429   zinc finger protein 84 
ZNF548                0.429   zinc finger protein 548 
ZNF135                0.425   zinc finger protein 135 
ZNF585B               0.424   zinc finger protein 585B 
ZNF347                0.423   zinc finger protein 347 
ZNF268                0.423   zinc finger protein 268 
ZNF197                0.420   zinc finger protein 197 isoform 1 
ZNF658                0.419   zinc finger protein 658 
ZNF534                0.419   zinc finger protein 534 isoform 2 
ZNF546                0.418   zinc finger protein 546 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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