Guide to the Human Genome
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Name: ZNF548 Sequence: fasta or formatted (533aa) NCBI GI: 23097268
Description:

zinc finger protein 548

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.3         12           1
 C cysteine            5.8         31           1
 D aspartate           2.6         14           2
 E glutamate           9.9         53           2
 F phenylalanine       5.1         27           2
 G glycine             6.4         34           1
 H histidine           7.1         38           2
 I isoleucine          3.8         20           1
 K lysine              6.4         34           1
 L leucine             5.6         30           2
 M methionine          1.9         10           1
 N asparagine          3.6         19           1
 P proline             3.8         20           2
 Q glutamine           4.3         23           2
 R arginine            7.7         41           1
 S serine              8.1         43           2
 T threonine           5.3         28           2
 V valine              4.5         24           2
 W tryptophan          1.3          7           1
 Y tyrosine            4.7         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 548 
ZNF17                 0.534   zinc finger protein 17 
ZNF749                0.482   zinc finger protein 749 
ZNF211                0.456   zinc finger protein 211 isoform 1 
ZNF211                0.452   zinc finger protein 211 isoform 2 
ZNF304                0.448   zinc finger protein 304 
ZNF547                0.445   zinc finger protein 547 
ZNF530                0.441   zinc finger protein 530 
ZNF418                0.438   zinc finger protein 418 
ZNF132                0.433   zinc finger protein 132 
ZNF419                0.433   zinc finger protein 419 isoform 7 
ZNF419                0.433   zinc finger protein 419 isoform 6 
ZNF419                0.433   zinc finger protein 419 isoform 5 
ZNF792                0.431   zinc finger protein 792 
ZNF416                0.429   zinc finger protein 416 
ZNF256                0.426   zinc finger protein 256 
ZNF776                0.422   zinc finger protein 776 
ZNF419                0.421   zinc finger protein 419 isoform 2 
ZNF419                0.419   zinc finger protein 419 isoform 4 
ZNF419                0.419   zinc finger protein 419 isoform 3 
ZNF419                0.419   zinc finger protein 419 isoform 1 
ZNF587                0.418   zinc finger protein 587 
ZNF417                0.416   zinc finger protein 417 
ZNF551                0.415   zinc finger protein 551 
LOC100293516          0.409   PREDICTED: similar to zinc finger protein 587 [Homo...
LOC100288322          0.406   PREDICTED: similar to zinc finger protein 587 [Homo...
LOC100288322          0.406   PREDICTED: hypothetical protein XP_002343703 
ZNF814                0.404   zinc finger protein 814 
ZNF772                0.402   zinc finger protein 772 isoform 2 
ZIK1                  0.400   zinc finger protein interacting with K protein 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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