Guide to the Human Genome
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Name: ZNF552 Sequence: fasta or formatted (407aa) NCBI GI: 46358076
Description:

zinc finger protein 552

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         18           4
 C cysteine            5.4         22           1
 D aspartate           2.5         10           1
 E glutamate           8.4         34           2
 F phenylalanine       4.2         17           2
 G glycine             7.6         31           2
 H histidine           7.9         32           2
 I isoleucine          2.5         10           1
 K lysine              8.4         34           2
 L leucine             7.1         29           2
 M methionine          1.2          5           1
 N asparagine          2.0          8           1
 P proline             3.4         14           1
 Q glutamine           4.9         20           2
 R arginine            5.7         23           2
 S serine             10.1         41           3
 T threonine           5.2         21           1
 V valine              5.4         22           1
 W tryptophan          1.0          4           1
 Y tyrosine            2.9         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 552 
LOC100293516          0.738   PREDICTED: similar to zinc finger protein 587 [Homo...
LOC100288322          0.733   PREDICTED: similar to zinc finger protein 587 [Homo...
LOC100288322          0.733   PREDICTED: hypothetical protein XP_002343703 
ZNF814                0.716   zinc finger protein 814 
ZNF418                0.644   zinc finger protein 418 
ZNF417                0.531   zinc finger protein 417 
ZNF776                0.530   zinc finger protein 776 
ZNF587                0.530   zinc finger protein 587 
ZNF256                0.500   zinc finger protein 256 
ZNF211                0.474   zinc finger protein 211 isoform 2 
ZNF211                0.466   zinc finger protein 211 isoform 1 
ZNF772                0.462   zinc finger protein 772 isoform 2 
ZNF772                0.438   zinc finger protein 772 isoform 1 
ZNF530                0.416   zinc finger protein 530 
ZNF304                0.405   zinc finger protein 304 
ZNF416                0.398   zinc finger protein 416 
ZNF132                0.392   zinc finger protein 132 
ZNF549                0.385   zinc finger protein 549 
ZNF586                0.384   zinc finger protein 586 
ZNF792                0.382   zinc finger protein 792 
ZNF671                0.381   zinc finger protein 671 
ZNF547                0.380   zinc finger protein 547 
ZNF134                0.374   zinc finger protein 134 
ZNF419                0.373   zinc finger protein 419 isoform 4 
ZIK1                  0.371   zinc finger protein interacting with K protein 1 [Ho...
ZNF548                0.371   zinc finger protein 548 
ZNF773                0.369   zinc finger protein 773 
ZNF419                0.368   zinc finger protein 419 isoform 3 
ZNF17                 0.368   zinc finger protein 17 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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