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Search of human proteins with 239746366
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746366 PREDICTED: hypothetical protein XP_002343738 [Homo
sapiens]
(522 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746366 PREDICTED: hypothetical protein XP_002343738 [Homo ... 1107 0.0
gi|239757412 PREDICTED: hypothetical protein XP_002345272 [Homo ... 697 0.0
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ... 652 0.0
gi|239756458 PREDICTED: similar to ZNF668 protein [Homo sapiens] 48 2e-05
gi|239750986 PREDICTED: hypothetical protein XP_002347637 [Homo ... 48 2e-05
gi|239745391 PREDICTED: hypothetical protein XP_002343487 [Homo ... 48 2e-05
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 45 1e-04
gi|238859557 regulatory factor X1 [Homo sapiens] 45 2e-04
gi|119395716 forkhead box C1 [Homo sapiens] 43 6e-04
gi|126090909 engrailed homeobox 1 [Homo sapiens] 43 8e-04
gi|239751880 PREDICTED: hypothetical protein XP_002348020 [Homo ... 40 0.004
gi|239746369 PREDICTED: hypothetical protein XP_002343699 [Homo ... 40 0.004
gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens] 40 0.004
gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens] 40 0.004
gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens] 40 0.004
gi|25777645 small conductance calcium-activated potassium channe... 40 0.004
gi|21322252 androgen receptor isoform 1 [Homo sapiens] 40 0.005
gi|239753986 PREDICTED: similar to hCG1989907 [Homo sapiens] 40 0.005
gi|239748521 PREDICTED: hypothetical protein XP_002346713 [Homo ... 40 0.005
gi|239742492 PREDICTED: hypothetical protein XP_002342529 [Homo ... 40 0.005
gi|150378478 PR domain containing 8 [Homo sapiens] 40 0.005
gi|150378439 PR domain containing 8 [Homo sapiens] 40 0.005
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 39 0.009
gi|46852390 coiled-coil domain containing 6 [Homo sapiens] 38 0.020
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 37 0.034
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 37 0.034
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 37 0.034
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens] 37 0.034
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 37 0.044
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 37 0.044
>gi|239746366 PREDICTED: hypothetical protein XP_002343738 [Homo
sapiens]
Length = 522
Score = 1107 bits (2864), Expect = 0.0
Identities = 522/522 (100%), Positives = 522/522 (100%)
Query: 1 MTLPPSLPPGKQNTGGETRVFISKPSLRHPAPPRLALSGWGAADDEEFLSGWAGGRRLRQ 60
MTLPPSLPPGKQNTGGETRVFISKPSLRHPAPPRLALSGWGAADDEEFLSGWAGGRRLRQ
Sbjct: 1 MTLPPSLPPGKQNTGGETRVFISKPSLRHPAPPRLALSGWGAADDEEFLSGWAGGRRLRQ 60
Query: 61 PRRKCFYLLYAESSLFAIGPAQHQHALQALVRLECLKEDILDHTSAGLAIPRLPGARASE 120
PRRKCFYLLYAESSLFAIGPAQHQHALQALVRLECLKEDILDHTSAGLAIPRLPGARASE
Sbjct: 61 PRRKCFYLLYAESSLFAIGPAQHQHALQALVRLECLKEDILDHTSAGLAIPRLPGARASE 120
Query: 121 QLLSCPALNNQQVGCLSSHSSPTGIGELAGHGLELDRGHLLCWLELDRGYFLCWLELDCG 180
QLLSCPALNNQQVGCLSSHSSPTGIGELAGHGLELDRGHLLCWLELDRGYFLCWLELDCG
Sbjct: 121 QLLSCPALNNQQVGCLSSHSSPTGIGELAGHGLELDRGHLLCWLELDRGYFLCWLELDCG 180
Query: 181 HLLRWLELDRGYFWGWAWQPDHSRPLARFPHCPRALPCTAAPSPSTGGGQQDELGRCGRG 240
HLLRWLELDRGYFWGWAWQPDHSRPLARFPHCPRALPCTAAPSPSTGGGQQDELGRCGRG
Sbjct: 181 HLLRWLELDRGYFWGWAWQPDHSRPLARFPHCPRALPCTAAPSPSTGGGQQDELGRCGRG 240
Query: 241 RRCRGLHAAGDQLEALGSLHQEERLRVGRCWPQARGLGRAPRHLEGERGLEVGQDVDILG 300
RRCRGLHAAGDQLEALGSLHQEERLRVGRCWPQARGLGRAPRHLEGERGLEVGQDVDILG
Sbjct: 241 RRCRGLHAAGDQLEALGSLHQEERLRVGRCWPQARGLGRAPRHLEGERGLEVGQDVDILG 300
Query: 301 GWRGPRSSHRLEEWVKVLGQSGQRKGRSPVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKA 360
GWRGPRSSHRLEEWVKVLGQSGQRKGRSPVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKA
Sbjct: 301 GWRGPRSSHRLEEWVKVLGQSGQRKGRSPVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKA 360
Query: 361 RRPVCTRWWMASREERLKALPHSPHCLSLRGRAPGRGLFHVALLMRQEAGQLREGAVAAA 420
RRPVCTRWWMASREERLKALPHSPHCLSLRGRAPGRGLFHVALLMRQEAGQLREGAVAAA
Sbjct: 361 RRPVCTRWWMASREERLKALPHSPHCLSLRGRAPGRGLFHVALLMRQEAGQLREGAVAAA 420
Query: 421 AAERLPAGSPVAVLPSQRYTSSTVVSAAAKKSSGTTGGGGGGGAGGAGGLWGWRCRCSSR 480
AAERLPAGSPVAVLPSQRYTSSTVVSAAAKKSSGTTGGGGGGGAGGAGGLWGWRCRCSSR
Sbjct: 421 AAERLPAGSPVAVLPSQRYTSSTVVSAAAKKSSGTTGGGGGGGAGGAGGLWGWRCRCSSR 480
Query: 481 LEEWVKVLGQSGQRKGRSPVCTRWCCRRLVLCVKLFPQTPQV 522
LEEWVKVLGQSGQRKGRSPVCTRWCCRRLVLCVKLFPQTPQV
Sbjct: 481 LEEWVKVLGQSGQRKGRSPVCTRWCCRRLVLCVKLFPQTPQV 522
>gi|239757412 PREDICTED: hypothetical protein XP_002345272 [Homo
sapiens]
Length = 564
Score = 697 bits (1798), Expect = 0.0
Identities = 341/404 (84%), Positives = 347/404 (85%), Gaps = 26/404 (6%)
Query: 3 LPPSLPPGKQN-TGGETRVFISKPSLRHPAPPRLALSGWGAADDEEFLSGWAGGRRLRQP 61
LPP +P N + G R + HP LSGWGAADDEEFLSGWAGGRRLRQP
Sbjct: 74 LPPHVPSLLSNLSAGRRRQRVDS----HPVAAVQQLSGWGAADDEEFLSGWAGGRRLRQP 129
Query: 62 RRKCFYLLYAESSLFAIGPAQHQHALQALVRLECLKEDILDHTSAGLAIPRLPGARASEQ 121
RRKCFYLLYAESSLFAIGPAQHQHALQALVRLECLKEDILDHTSAGLAIPRLPGARASEQ
Sbjct: 130 RRKCFYLLYAESSLFAIGPAQHQHALQALVRLECLKEDILDHTSAGLAIPRLPGARASEQ 189
Query: 122 LLSCPALNNQQVGCLSSHSSPTGIGELAGHGLELDRGHLLCWLELDRGYFLCWLELDCGH 181
LLSCPALNNQQVGCLSSHSSPTGIGELAGHGLELDRGHLLCWLELDRGYFLCWLELDCGH
Sbjct: 190 LLSCPALNNQQVGCLSSHSSPTGIGELAGHGLELDRGHLLCWLELDRGYFLCWLELDCGH 249
Query: 182 LLRWLELDRGYFWGW------------AWQPDHSRPLARFPHCPRALPCTAAPSPSTGGG 229
LLRWLELDRGYFWGW AWQPDHSRPLARFPHCPRALPCTAAPSPSTGGG
Sbjct: 250 LLRWLELDRGYFWGWSEGLELHPTHFLAWQPDHSRPLARFPHCPRALPCTAAPSPSTGGG 309
Query: 230 QQDELGRCGRGRRCRGLHAAGDQLEALGSLHQEERLRVGRCWPQARGLGRAPRHLEGERG 289
QQDELGRCGRGRRCRGLHAAGDQLEALGSLHQEERLRVGRCWPQARGLGRAPRHLEGERG
Sbjct: 310 QQDELGRCGRGRRCRGLHAAGDQLEALGSLHQEERLRVGRCWPQARGLGRAPRHLEGERG 369
Query: 290 LEVGQDVDILGGWRGPRSSHRLEEWVKVLGQSGQRKGRSPVCTRWCCRRLEVCAKLLPQT 349
LEVGQDVDILGGWRGPRSSHRLEEWVKVLGQSGQRKGRSPVCTRWCCRRL +C KL PQT
Sbjct: 370 LEVGQDVDILGGWRGPRSSHRLEEWVKVLGQSGQRKGRSPVCTRWCCRRLVLCVKLFPQT 429
Query: 350 PQAWG--------LSPVKARRPVCTRWWMASREERLKALPHSPH 385
PQ W +KARRPVCT W+ SREERLKAL S H
Sbjct: 430 PQ-WDDHLKARPHWPQMKARRPVCTLRWICSREERLKALGQSGH 472
Score = 101 bits (252), Expect = 1e-21
Identities = 48/53 (90%), Positives = 48/53 (90%), Gaps = 1/53 (1%)
Query: 470 LWGWRC-RCSSRLEEWVKVLGQSGQRKGRSPVCTRWCCRRLVLCVKLFPQTPQ 521
L GWR R S RLEEWVKVLGQSGQRKGRSPVCTRWCCRRLVLCVKLFPQTPQ
Sbjct: 379 LGGWRGPRSSHRLEEWVKVLGQSGQRKGRSPVCTRWCCRRLVLCVKLFPQTPQ 431
>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
sapiens]
Length = 944
Score = 652 bits (1681), Expect = 0.0
Identities = 313/351 (89%), Positives = 316/351 (90%), Gaps = 17/351 (4%)
Query: 3 LPPSLPPGKQN-TGGETRVFISKPSLRHPAPPRLALSGWGAADDEEFLSGWAGGRRLRQP 61
LPP +P N + G R + HP LSGWGAADDEEFLSGWAGGRRLRQP
Sbjct: 74 LPPHVPSLLSNLSAGRRRQRVDS----HPVAAVQQLSGWGAADDEEFLSGWAGGRRLRQP 129
Query: 62 RRKCFYLLYAESSLFAIGPAQHQHALQALVRLECLKEDILDHTSAGLAIPRLPGARASEQ 121
RRKCFYLLYAESSLFAIGPAQHQHALQALVRLECLKEDILDHTSAGLAIPRLPGARASEQ
Sbjct: 130 RRKCFYLLYAESSLFAIGPAQHQHALQALVRLECLKEDILDHTSAGLAIPRLPGARASEQ 189
Query: 122 LLSCPALNNQQVGCLSSHSSPTGIGELAGHGLELDRGHLLCWLELDRGYFLCWLELDCGH 181
LLSCPALNNQQVGCLSSHSSPTGIGELAGHGLELDRGHLLCWLELDRGYFLCWLELDCGH
Sbjct: 190 LLSCPALNNQQVGCLSSHSSPTGIGELAGHGLELDRGHLLCWLELDRGYFLCWLELDCGH 249
Query: 182 LLRWLELDRGYFWGW------------AWQPDHSRPLARFPHCPRALPCTAAPSPSTGGG 229
LLRWLELDRGYFWGW AWQPDHSRPLARFPHCPRALPCTAAPSPSTGGG
Sbjct: 250 LLRWLELDRGYFWGWSEGLELHPTHFLAWQPDHSRPLARFPHCPRALPCTAAPSPSTGGG 309
Query: 230 QQDELGRCGRGRRCRGLHAAGDQLEALGSLHQEERLRVGRCWPQARGLGRAPRHLEGERG 289
QQDELGRCGRGRRCRGLHAAGDQLEALGSLHQEERLRVGRCWPQARGLGRAPRHLEGERG
Sbjct: 310 QQDELGRCGRGRRCRGLHAAGDQLEALGSLHQEERLRVGRCWPQARGLGRAPRHLEGERG 369
Query: 290 LEVGQDVDILGGWRGPRSSHRLEEWVKVLGQSGQRKGRSPVCTRWCCRRLE 340
LEVGQDVDILGGWRGPRSSHRLEEWVKVLGQSGQRKGRSPVCTRWCCRRLE
Sbjct: 370 LEVGQDVDILGGWRGPRSSHRLEEWVKVLGQSGQRKGRSPVCTRWCCRRLE 420
Score = 76.6 bits (187), Expect = 5e-14
Identities = 36/41 (87%), Positives = 36/41 (87%), Gaps = 1/41 (2%)
Query: 470 LWGWRC-RCSSRLEEWVKVLGQSGQRKGRSPVCTRWCCRRL 509
L GWR R S RLEEWVKVLGQSGQRKGRSPVCTRWCCRRL
Sbjct: 379 LGGWRGPRSSHRLEEWVKVLGQSGQRKGRSPVCTRWCCRRL 419
Score = 44.7 bits (104), Expect = 2e-04
Identities = 59/177 (33%), Positives = 73/177 (41%), Gaps = 33/177 (18%)
Query: 230 QQDELGRCGRGRRCRGLHAAGDQLEALGSLHQEERLRVGRCWPQARGL------------ 277
+Q EL GRGR RG G + A+G E L+VG GL
Sbjct: 688 RQKELRHHGRGRGRRG----GRRGRAVGL---EVPLQVGVAHEDLAGLPGLGGRGRGGGT 740
Query: 278 ---GRAPRHLEGERGLEVGQDVDILGGWRGPRSS-HRLEEWVKVLGQSGQRKGRSPVCTR 333
G A R L ++ VG+ + GP + H L VL Q G + P +
Sbjct: 741 RGGGGAVRALVQQQVGGVGEGLGAERAAEGPLARVHAL-----VLPQVGALREALPADST 795
Query: 334 WCCRRLEVCAKLLPQTPQAW-GLSPV----KARRPVCTRWWMASREERLKALPHSPH 385
V + PQ + GL V KARRPVCT W+ SREERLKAL S H
Sbjct: 796 GVGPLAGVHVAVAPQAGRVLEGLGAVRARMKARRPVCTLRWICSREERLKALGQSGH 852
>gi|239756458 PREDICTED: similar to ZNF668 protein [Homo sapiens]
Length = 377
Score = 48.1 bits (113), Expect = 2e-05
Identities = 27/62 (43%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 323 QRKGRSPVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKARRPVCTRWWMASREERLKALPH 382
Q KG SPVCT W R E KLL + G S PVC RW A E + K PH
Sbjct: 32 QEKGFSPVCTPWWRTRSEELRKLLSHSGHLCGFS------PVCVRWCRARSEPQRKRFPH 85
Query: 383 SP 384
P
Sbjct: 86 CP 87
Score = 46.2 bits (108), Expect = 7e-05
Identities = 24/52 (46%), Positives = 27/52 (51%)
Query: 310 RLEEWVKVLGQSGQRKGRSPVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKAR 361
R EE K+L SG G SPVC RWC R E K P PQ G S ++R
Sbjct: 47 RSEELRKLLSHSGHLCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSAARSR 98
Score = 40.4 bits (93), Expect = 0.004
Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 473 WRCRCSSRLEEWVKVLGQSGQRKGRSPVCTRWCCRRLVLCVKLFPQTPQV 522
WR +R EE K+L SG G SPVC RWC R K FP PQ+
Sbjct: 44 WR----TRSEELRKLLSHSGHLCGFSPVCVRWCRARSEPQRKRFPHCPQL 89
Score = 33.1 bits (74), Expect = 0.63
Identities = 14/27 (51%), Positives = 14/27 (51%)
Query: 359 KARRPVCTRWWMASREERLKALPHSPH 385
K PVCT WW EE K L HS H
Sbjct: 34 KGFSPVCTPWWRTRSEELRKLLSHSGH 60
>gi|239750986 PREDICTED: hypothetical protein XP_002347637 [Homo
sapiens]
Length = 377
Score = 48.1 bits (113), Expect = 2e-05
Identities = 27/62 (43%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 323 QRKGRSPVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKARRPVCTRWWMASREERLKALPH 382
Q KG SPVCT W R E KLL + G S PVC RW A E + K PH
Sbjct: 32 QEKGFSPVCTPWWRTRSEELRKLLSHSGHLCGFS------PVCVRWCRARSEPQRKRFPH 85
Query: 383 SP 384
P
Sbjct: 86 CP 87
Score = 46.2 bits (108), Expect = 7e-05
Identities = 24/52 (46%), Positives = 27/52 (51%)
Query: 310 RLEEWVKVLGQSGQRKGRSPVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKAR 361
R EE K+L SG G SPVC RWC R E K P PQ G S ++R
Sbjct: 47 RSEELRKLLSHSGHLCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSAARSR 98
Score = 40.4 bits (93), Expect = 0.004
Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 473 WRCRCSSRLEEWVKVLGQSGQRKGRSPVCTRWCCRRLVLCVKLFPQTPQV 522
WR +R EE K+L SG G SPVC RWC R K FP PQ+
Sbjct: 44 WR----TRSEELRKLLSHSGHLCGFSPVCVRWCRARSEPQRKRFPHCPQL 89
Score = 33.1 bits (74), Expect = 0.63
Identities = 14/27 (51%), Positives = 14/27 (51%)
Query: 359 KARRPVCTRWWMASREERLKALPHSPH 385
K PVCT WW EE K L HS H
Sbjct: 34 KGFSPVCTPWWRTRSEELRKLLSHSGH 60
>gi|239745391 PREDICTED: hypothetical protein XP_002343487 [Homo
sapiens]
Length = 417
Score = 48.1 bits (113), Expect = 2e-05
Identities = 27/62 (43%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 323 QRKGRSPVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKARRPVCTRWWMASREERLKALPH 382
Q KG SPVCT W R E KLL + G S PVC RW A E + K PH
Sbjct: 72 QEKGFSPVCTPWWRTRSEELRKLLSHSGHLCGFS------PVCVRWCRARSEPQRKRFPH 125
Query: 383 SP 384
P
Sbjct: 126 CP 127
Score = 46.2 bits (108), Expect = 7e-05
Identities = 24/52 (46%), Positives = 27/52 (51%)
Query: 310 RLEEWVKVLGQSGQRKGRSPVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKAR 361
R EE K+L SG G SPVC RWC R E K P PQ G S ++R
Sbjct: 87 RSEELRKLLSHSGHLCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSAARSR 138
Score = 41.2 bits (95), Expect = 0.002
Identities = 40/135 (29%), Positives = 49/135 (36%), Gaps = 29/135 (21%)
Query: 388 SLRGRAPGRGLFHVALLMRQEAGQLREGAVAAAAAERLPAGSPVAVLPSQRYTSSTVVSA 447
S+ GR LMR E L E VA +AAE G ++ ++ S
Sbjct: 24 SISADGAGRQCRWSRALMRDEVRALLEALVALSAAEGPLTGVHTPMVQQEKGFSPVCTP- 82
Query: 448 AAKKSSGTTGGGGGGGAGGAGGLWGWRCRCSSRLEEWVKVLGQSGQRKGRSPVCTRWCCR 507
W WR +R EE K+L SG G SPVC RWC
Sbjct: 83 -----------------------W-WR----TRSEELRKLLSHSGHLCGFSPVCVRWCRA 114
Query: 508 RLVLCVKLFPQTPQV 522
R K FP PQ+
Sbjct: 115 RSEPQRKRFPHCPQL 129
Score = 33.1 bits (74), Expect = 0.63
Identities = 14/27 (51%), Positives = 14/27 (51%)
Query: 359 KARRPVCTRWWMASREERLKALPHSPH 385
K PVCT WW EE K L HS H
Sbjct: 74 KGFSPVCTPWWRTRSEELRKLLSHSGH 100
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 45.4 bits (106), Expect = 1e-04
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 416 AVAAAAAERLPAG--SPVAVLPSQRYTSSTVVSAAAKKSSGTTGGGGGGGAGGAGG 469
A +AAAA P+G +P + L S+ +AAA + G+ GGGGGGG GG GG
Sbjct: 370 ASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGGGGGGGGGGG 425
Score = 43.1 bits (100), Expect = 6e-04
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 416 AVAAAAAERLPAGSP----------VAVLPSQRYTSSTVVSAAAKKSSGTTGGGGGGGAG 465
A AAAA+ AG+P ++ SQ ++ +AAA S G GGGGGGG G
Sbjct: 365 AAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGGGGGGGGGG 424
Query: 466 GAGG 469
G GG
Sbjct: 425 GGGG 428
>gi|238859557 regulatory factor X1 [Homo sapiens]
Length = 979
Score = 44.7 bits (104), Expect = 2e-04
Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 407 QEAGQLREGAVAAAAAERLPAGS-PVAVLPSQRYTSSTVVSAAAKKSSGTTGGGGGGGAG 465
+ AG + + A + +GS P+ V SQ SST A A SSG G GGGGG G
Sbjct: 333 EAAGTATQVSTPATSQAVASSGSMPMYVSGSQVVASSTSTGAGASNSSGGGGSGGGGGGG 392
Query: 466 GAGG 469
G GG
Sbjct: 393 GGGG 396
>gi|119395716 forkhead box C1 [Homo sapiens]
Length = 553
Score = 43.1 bits (100), Expect = 6e-04
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 409 AGQLREGAVAAAAAE-RLPAGSPVAVLPSQRYTSSTVVSAAAKKSSGTTGGGGGGGAGGA 467
A +L G +A+AAA R P+A+ SS S ++ SS + GGGGGGAG A
Sbjct: 325 AAELSSGLLASAAASSRAGIAPPLALGAYSPGQSSLYSSPCSQTSSAGSSGGGGGGAGAA 384
Query: 468 GGLWG 472
GG G
Sbjct: 385 GGAGG 389
Score = 32.0 bits (71), Expect = 1.4
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 391 GRAPGRGLFHVAL-LMRQEAGQLREGAVAAAAAERLPAGSPVAVLPSQRYTSSTVVSAAA 449
G A G G +H L M A R G + A AG P Y+ V S+++
Sbjct: 385 GGAGGAGTYHCNLQAMSLYAAGERGGHLQGAPGG---AGGSAVDDPLPDYSLPPVTSSSS 441
Query: 450 KKSSGTTGGGGGGGAGGAG 468
S GGGGGGG AG
Sbjct: 442 SSLSHGGGGGGGGGGQEAG 460
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 42.7 bits (99), Expect = 8e-04
Identities = 23/51 (45%), Positives = 27/51 (52%)
Query: 418 AAAAAERLPAGSPVAVLPSQRYTSSTVVSAAAKKSSGTTGGGGGGGAGGAG 468
AAA A AG+P A + + +AAA K S T GGG GGGAG G
Sbjct: 186 AAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPG 236
>gi|239751880 PREDICTED: hypothetical protein XP_002348020 [Homo
sapiens]
Length = 146
Score = 40.4 bits (93), Expect = 0.004
Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Query: 315 VKVLGQSGQRKGRSPVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKARRPV----CTRWWM 370
VK Q G GRSP CTRW C K + Q K RRP C R W+
Sbjct: 64 VKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQR------KGRRPAWMLQCRRRWL 117
Query: 371 ASREERLKALPHSPH 385
ERLK LP + H
Sbjct: 118 ----ERLKVLPQTLH 128
Score = 35.0 bits (79), Expect = 0.17
Identities = 32/85 (37%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 299 LGGWRGPRSSHRLEEWV-------KVLGQSGQRKGRSPVCTRWCCRRLEVCAKLLPQTPQ 351
+G W G RS W K G SGQRKGR P C RR K+LPQT
Sbjct: 70 MGHWYG-RSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERLKVLPQTLH 128
Query: 352 AWGLSPVKARRPVCTRWWMASREER 376
G S C W SR ER
Sbjct: 129 WCGFS------SECEMLW-RSRSER 146
Score = 34.3 bits (77), Expect = 0.28
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 427 AGSPVAVLPSQRYTSSTVVSAAAKKSSGTTGGGGGGGAG---GAGGL-WGWRCRCSSRLE 482
AGSP + S +S+ V+ S G + G G G +G L + WR +
Sbjct: 8 AGSPFPSVSSS--SSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLAS-- 63
Query: 483 EWVKVLGQSGQRKGRSPVCTRWCC 506
VK Q G GRSP CTRW C
Sbjct: 64 --VKRSRQMGHWYGRSPECTRWWC 85
Score = 33.5 bits (75), Expect = 0.49
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 473 WRCRCSSRLEEWVKVLGQSGQRKGRSPVCTRWCCRRLVLCVKLFPQT 519
W C S K G SGQRKGR P C RR + +K+ PQT
Sbjct: 83 WWCASSPASR---KRRGHSGQRKGRRPAWMLQCRRRWLERLKVLPQT 126
>gi|239746369 PREDICTED: hypothetical protein XP_002343699 [Homo
sapiens]
Length = 146
Score = 40.4 bits (93), Expect = 0.004
Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Query: 315 VKVLGQSGQRKGRSPVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKARRPV----CTRWWM 370
VK Q G GRSP CTRW C K + Q K RRP C R W+
Sbjct: 64 VKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQR------KGRRPAWMLQCRRRWL 117
Query: 371 ASREERLKALPHSPH 385
ERLK LP + H
Sbjct: 118 ----ERLKVLPQTLH 128
Score = 35.0 bits (79), Expect = 0.17
Identities = 32/85 (37%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 299 LGGWRGPRSSHRLEEWV-------KVLGQSGQRKGRSPVCTRWCCRRLEVCAKLLPQTPQ 351
+G W G RS W K G SGQRKGR P C RR K+LPQT
Sbjct: 70 MGHWYG-RSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERLKVLPQTLH 128
Query: 352 AWGLSPVKARRPVCTRWWMASREER 376
G S C W SR ER
Sbjct: 129 WCGFS------SECEMLW-RSRSER 146
Score = 34.3 bits (77), Expect = 0.28
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 427 AGSPVAVLPSQRYTSSTVVSAAAKKSSGTTGGGGGGGAG---GAGGL-WGWRCRCSSRLE 482
AGSP + S +S+ V+ S G + G G G +G L + WR +
Sbjct: 8 AGSPFPSVSSS--SSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLAS-- 63
Query: 483 EWVKVLGQSGQRKGRSPVCTRWCC 506
VK Q G GRSP CTRW C
Sbjct: 64 --VKRSRQMGHWYGRSPECTRWWC 85
Score = 33.5 bits (75), Expect = 0.49
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 473 WRCRCSSRLEEWVKVLGQSGQRKGRSPVCTRWCCRRLVLCVKLFPQT 519
W C S K G SGQRKGR P C RR + +K+ PQT
Sbjct: 83 WWCASSPASR---KRRGHSGQRKGRRPAWMLQCRRRWLERLKVLPQT 126
>gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens]
Length = 532
Score = 40.4 bits (93), Expect = 0.004
Identities = 31/86 (36%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 407 QEAGQLREGAVAAAAAERLPAGSPVAVLPSQRYTSSTVVSAAAKKSSGTTGGGGGGGAGG 466
Q + L A AAAAA A + AV R S A G+ GGGGGGAGG
Sbjct: 448 QSSSNLSPAAAAAAAAA---AAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGGGGGAGG 504
Query: 467 AG--------GLWGWRCRCSSRLEEW 484
G G G SS EW
Sbjct: 505 GGGGSSGGGSGTAGGHSGLSSNFNEW 530
Score = 33.5 bits (75), Expect = 0.49
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 410 GQLREGAVAAAAAERLPAGSPVAVLPSQRYTSSTVVSAAAKKSSGTTGGGGGGGAGGAGG 469
G + A +++ PA + A + + + V SG GGG GGG+G GG
Sbjct: 439 GLVSPSAEPQSSSNLSPAAAAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGG 498
>gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]
Length = 920
Score = 40.4 bits (93), Expect = 0.004
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 382 HSPHCLSLRGRAPGRGLFHVALLMRQEAGQLREGAVAAAAAE-RLPAGSPVAVLPSQRYT 440
H P G G G HVA+ ++ GA AAA + + A + A+ P
Sbjct: 677 HFPSPQGGGGGGGGGGGLHVAI---PDSVLTPPGADGAAARKTQFGASATAALAPVASDP 733
Query: 441 SSTVVSAAAKKSSGTTGGGGGGGAGGAGG 469
S +SA+ + GGGGGGG GGAGG
Sbjct: 734 LSPPLSASPRDKHPGNGGGGGGGGGGAGG 762
>gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]
Length = 901
Score = 40.4 bits (93), Expect = 0.004
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 382 HSPHCLSLRGRAPGRGLFHVALLMRQEAGQLREGAVAAAAAE-RLPAGSPVAVLPSQRYT 440
H P G G G HVA+ ++ GA AAA + + A + A+ P
Sbjct: 658 HFPSPQGGGGGGGGGGGLHVAI---PDSVLTPPGADGAAARKTQFGASATAALAPVASDP 714
Query: 441 SSTVVSAAAKKSSGTTGGGGGGGAGGAGG 469
S +SA+ + GGGGGGG GGAGG
Sbjct: 715 LSPPLSASPRDKHPGNGGGGGGGGGGAGG 743
>gi|25777645 small conductance calcium-activated potassium channel
protein 2 isoform a [Homo sapiens]
Length = 579
Score = 40.4 bits (93), Expect = 0.004
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 416 AVAAAAAERLPAGSPVAVLPSQRYTSSTVVSAAAKKSSGTTGGGGGGGAGGAGGLWG 472
+ AAAAA + + +P V+ + +S ++ G+TGGGGGGG G G G
Sbjct: 50 SAAAAAAAAVSSSAPEIVVSKPEHNNSNNLALYGTGGGGSTGGGGGGGGSGHGSSSG 106
>gi|21322252 androgen receptor isoform 1 [Homo sapiens]
Length = 920
Score = 40.0 bits (92), Expect = 0.005
Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 409 AGQLREGAVAA---AAAERLPAGSPVAVLPSQRYTSSTVVSAAAKKSSGTTGGGGGGGAG 465
A Q R G +A+ A A +GSP A S +T T G GGGGGGG G
Sbjct: 403 AAQCRYGDLASLHGAGAAGPGSGSPSAAASSSWHTLFTAEEGQLYGPCGGGGGGGGGGGG 462
Query: 466 GAGG 469
G GG
Sbjct: 463 GGGG 466
>gi|239753986 PREDICTED: similar to hCG1989907 [Homo sapiens]
Length = 229
Score = 40.0 bits (92), Expect = 0.005
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 329 PVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKARRPVCTRWWMASREERLKALPHSPHCLS 388
PVC+ W C R +V L P+ + +RP+ + + + + LP P
Sbjct: 57 PVCSPWTCVRRKVAVSLSPEQQVGSDEAEQAPQRPLPAQQLVGAAAQPQHRLPEQP---G 113
Query: 389 LRGRAPGRGLFHV 401
RGR P RGL H+
Sbjct: 114 YRGRRPARGLLHL 126
>gi|239748521 PREDICTED: hypothetical protein XP_002346713 [Homo
sapiens]
Length = 229
Score = 40.0 bits (92), Expect = 0.005
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 329 PVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKARRPVCTRWWMASREERLKALPHSPHCLS 388
PVC+ W C R +V L P+ + +RP+ + + + + LP P
Sbjct: 57 PVCSPWTCVRRKVAVSLSPEQQVGSDEAEQAPQRPLPAQQLVGAAAQPQHRLPEQP---G 113
Query: 389 LRGRAPGRGLFHV 401
RGR P RGL H+
Sbjct: 114 YRGRRPARGLLHL 126
>gi|239742492 PREDICTED: hypothetical protein XP_002342529 [Homo
sapiens]
Length = 229
Score = 40.0 bits (92), Expect = 0.005
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 329 PVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKARRPVCTRWWMASREERLKALPHSPHCLS 388
PVC+ W C R +V L P+ + +RP+ + + + + LP P
Sbjct: 57 PVCSPWTCVRRKVAVSLSPEQQVGSDEAEQAPQRPLPAQQLVGAAAQPQHRLPEQP---G 113
Query: 389 LRGRAPGRGLFHV 401
RGR P RGL H+
Sbjct: 114 YRGRRPARGLLHL 126
>gi|150378478 PR domain containing 8 [Homo sapiens]
Length = 689
Score = 40.0 bits (92), Expect = 0.005
Identities = 31/91 (34%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 387 LSLRGRAPGRGLFHVALLMRQEAGQLREGAVAAAAAERLPAGSPVAVLPSQRYTSSTVVS 446
L G A G G+ G A + AE+L A P LPS+ S
Sbjct: 398 LQEEGTADGAGVASEDQDAGGGGGSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARG 457
Query: 447 AAAKK-----SSGTTGGGGGGGAGGAGGLWG 472
+A S+G+T GGGG GAG AGG G
Sbjct: 458 SAFTSVPQLGSAGSTSGGGGTGAGAAGGAGG 488
>gi|150378439 PR domain containing 8 [Homo sapiens]
Length = 689
Score = 40.0 bits (92), Expect = 0.005
Identities = 31/91 (34%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 387 LSLRGRAPGRGLFHVALLMRQEAGQLREGAVAAAAAERLPAGSPVAVLPSQRYTSSTVVS 446
L G A G G+ G A + AE+L A P LPS+ S
Sbjct: 398 LQEEGTADGAGVASEDQDAGGGGGSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARG 457
Query: 447 AAAKK-----SSGTTGGGGGGGAGGAGGLWG 472
+A S+G+T GGGG GAG AGG G
Sbjct: 458 SAFTSVPQLGSAGSTSGGGGTGAGAAGGAGG 488
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 39.3 bits (90), Expect = 0.009
Identities = 23/43 (53%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 452 SSGTTGGGGGGGAGGA-GGLWG----WRCRCSSRLEEWVKVLG 489
SSG G GGGGG GGA GG WG W C C S W +LG
Sbjct: 429 SSGGGGSGGGGGVGGAGGGPWGPAPAW-CPCGSCCSWWKWLLG 470
Score = 30.0 bits (66), Expect = 5.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 436 SQRYTSSTVVSAAAKKSSGTTGGGGGGGAGGAGGLWG 472
S + S+ V + SS + GGGG G+ GAGG +G
Sbjct: 1292 SSSSSHSSSVRRGSSYSSSMSTGGGGAGSLGAGGAFG 1328
>gi|46852390 coiled-coil domain containing 6 [Homo sapiens]
Length = 474
Score = 38.1 bits (87), Expect = 0.020
Identities = 22/39 (56%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 446 SAAAKKS-SGTTGGGGGGGAGGAGGLWGWRCRCSSRLEE 483
SAA + S S T+GGGGGGG GG GG G RLEE
Sbjct: 20 SAAMQSSCSSTSGGGGGGGGGGGGGKSGGIVISPFRLEE 58
Score = 34.7 bits (78), Expect = 0.22
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 440 TSSTVVSAAAKKSSGTTGGGGGGGAGGAGG 469
+SS + ++ +SG GGGGGGG GG G
Sbjct: 18 SSSAAMQSSCSSTSGGGGGGGGGGGGGKSG 47
Score = 34.3 bits (77), Expect = 0.28
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 440 TSSTVVSAAAKKSSGTTGGGGGGGAGGAGGL 470
+S+ + S+ + S G GGGGGGG G +GG+
Sbjct: 19 SSAAMQSSCSSTSGGGGGGGGGGGGGKSGGI 49
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 37.4 bits (85), Expect = 0.034
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 416 AVAAAAAERLPAGSPVAVLPSQRYTSSTVVSAAAKKSSGTT--GGGGGGGAGGAGGLWG 472
+ ++A + P+ P A + + SAAA ++ T+ GGGGGGG+GG GG G
Sbjct: 32 STSSATSSPAPSIGPPASSGPTLFRPEPIASAAAAAATVTSTGGGGGGGGSGGGGGSSG 90
Score = 33.9 bits (76), Expect = 0.37
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 426 PAGSPVAVLPSQRYTSSTVVSAAAKKSSGTTGGGGGGGAGGAGGLWG 472
PA S + + S+ +A + G GGGG GG GG+ G G
Sbjct: 47 PASSGPTLFRPEPIASAAAAAATVTSTGGGGGGGGSGGGGGSSGNGG 93
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 37.4 bits (85), Expect = 0.034
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 416 AVAAAAAERLPAGSPVAVLPSQRYTSSTVVSAAAKKSSGTT--GGGGGGGAGGAGGLWG 472
+ ++A + P+ P A + + SAAA ++ T+ GGGGGGG+GG GG G
Sbjct: 32 STSSATSSPAPSIGPPASSGPTLFRPEPIASAAAAAATVTSTGGGGGGGGSGGGGGSSG 90
Score = 33.9 bits (76), Expect = 0.37
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 426 PAGSPVAVLPSQRYTSSTVVSAAAKKSSGTTGGGGGGGAGGAGGLWG 472
PA S + + S+ +A + G GGGG GG GG+ G G
Sbjct: 47 PASSGPTLFRPEPIASAAAAAATVTSTGGGGGGGGSGGGGGSSGNGG 93
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 37.4 bits (85), Expect = 0.034
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 416 AVAAAAAERLPAGSPVAVLPSQRYTSSTVVSAAAKKSSGTT--GGGGGGGAGGAGGLWG 472
+ ++A + P+ P A + + SAAA ++ T+ GGGGGGG+GG GG G
Sbjct: 32 STSSATSSPAPSIGPPASSGPTLFRPEPIASAAAAAATVTSTGGGGGGGGSGGGGGSSG 90
Score = 33.9 bits (76), Expect = 0.37
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 426 PAGSPVAVLPSQRYTSSTVVSAAAKKSSGTTGGGGGGGAGGAGGLWG 472
PA S + + S+ +A + G GGGG GG GG+ G G
Sbjct: 47 PASSGPTLFRPEPIASAAAAAATVTSTGGGGGGGGSGGGGGSSGNGG 93
>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
Length = 409
Score = 37.4 bits (85), Expect = 0.034
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 425 LPAGSPVAVLPSQRYTSST--------VVSAAAKKSSGTTGGGGGGGAGGAGGLWGWRCR 476
+P G + V P ST SA++ SS GGGGGGG GG GG G R
Sbjct: 14 MPHGGSLHVEPKYSALHSTSPGSSAPIAPSASSPSSSSNAGGGGGGGGGGGGG--GGRSS 71
Query: 477 CSS 479
SS
Sbjct: 72 SSS 74
Score = 36.2 bits (82), Expect = 0.075
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 440 TSSTVVSAAAKKSSGTTGGGGGGGAGGAGGLWGWRCRCSS 479
+S+ + +A+ SS + GGGGGG GG GG G SS
Sbjct: 36 SSAPIAPSASSPSSSSNAGGGGGGGGGGGGGGGRSSSSSS 75
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 37.0 bits (84), Expect = 0.044
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 407 QEAGQLREGAVAAAAAERLPAGSPVAVLPSQR----YTSSTV--VSAAAKKSSGTTGGGG 460
Q GQ G +A AG+P ++ P Q Y +S ++ +G GGGG
Sbjct: 196 QHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGG 255
Query: 461 GGGAGGAGG 469
GGG GG+GG
Sbjct: 256 GGGGGGSGG 264
Score = 33.1 bits (74), Expect = 0.63
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 445 VSAAAKKSSGTTGGGGGGGAGGAGGLWG 472
V+AAA ++ GGGGGGG GG+ +G
Sbjct: 281 VAAAAAAAAAAAGGGGGGGYGGSSAGYG 308
Score = 31.2 bits (69), Expect = 2.4
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 454 GTTGGGGGGGAGGAGG 469
G +GGGGGGG GAGG
Sbjct: 260 GGSGGGGGGGGAGAGG 275
Score = 30.8 bits (68), Expect = 3.1
Identities = 13/16 (81%), Positives = 13/16 (81%)
Query: 453 SGTTGGGGGGGAGGAG 468
SG GGGGG GAGGAG
Sbjct: 262 SGGGGGGGGAGAGGAG 277
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 37.0 bits (84), Expect = 0.044
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 407 QEAGQLREGAVAAAAAERLPAGSPVAVLPSQR----YTSSTV--VSAAAKKSSGTTGGGG 460
Q GQ G +A AG+P ++ P Q Y +S ++ +G GGGG
Sbjct: 196 QHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGG 255
Query: 461 GGGAGGAGG 469
GGG GG+GG
Sbjct: 256 GGGGGGSGG 264
Score = 33.1 bits (74), Expect = 0.63
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 445 VSAAAKKSSGTTGGGGGGGAGGAGGLWG 472
V+AAA ++ GGGGGGG GG+ +G
Sbjct: 281 VAAAAAAAAAAAGGGGGGGYGGSSAGYG 308
Score = 31.2 bits (69), Expect = 2.4
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 454 GTTGGGGGGGAGGAGG 469
G +GGGGGGG GAGG
Sbjct: 260 GGSGGGGGGGGAGAGG 275
Score = 30.8 bits (68), Expect = 3.1
Identities = 13/16 (81%), Positives = 13/16 (81%)
Query: 453 SGTTGGGGGGGAGGAG 468
SG GGGGG GAGGAG
Sbjct: 262 SGGGGGGGGAGAGGAG 277
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,252,445
Number of Sequences: 37866
Number of extensions: 1380083
Number of successful extensions: 12466
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 8339
Number of HSP's gapped (non-prelim): 2613
length of query: 522
length of database: 18,247,518
effective HSP length: 107
effective length of query: 415
effective length of database: 14,195,856
effective search space: 5891280240
effective search space used: 5891280240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.