Guide to the Human Genome
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Name: LOC100287950 Sequence: fasta or formatted (146aa) NCBI GI: 239746369
Description:

PREDICTED: hypothetical protein XP_002343699

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         12           1
 C cysteine            4.1          6           1
 D aspartate           0.7          1           1
 E glutamate           3.4          5           1
 F phenylalanine       2.1          3           1
 G glycine            11.6         17           2
 H histidine           3.4          5           1
 I isoleucine          0.0          0           0
 K lysine              2.7          4           1
 L leucine             5.5          8           1
 M methionine          4.1          6           1
 N asparagine          0.0          0           0
 P proline             6.8         10           1
 Q glutamine           3.4          5           1
 R arginine           14.4         21           3
 S serine             17.1         25           5
 T threonine           2.1          3           1
 V valine              4.1          6           1
 W tryptophan          5.5          8           2
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343699 
LOC100291242          1.000   PREDICTED: hypothetical protein XP_002348020 
LOC100292008          0.082   PREDICTED: similar to ZNF668 protein 
LOC100291370          0.082   PREDICTED: hypothetical protein XP_002347637 
LOC100287385          0.082   PREDICTED: hypothetical protein XP_002343487 
LOC100291995          0.069   PREDICTED: hypothetical protein XP_002345272 
LOC100288302          0.052   PREDICTED: hypothetical protein XP_002343738 
ZNF696                0.034   zinc finger protein 696 
NOTCH3                0.031   Notch homolog 3 
LOC100293256          0.031   PREDICTED: hypothetical protein 
ZNF775                0.027   zinc finger protein 775 
KLF14                 0.027   Kruppel-like factor 14 
ZC3H18                0.027   zinc finger CCCH-type containing 18 
COL3A1                0.024   collagen type III alpha 1 preproprotein 
LOC100293644          0.024   PREDICTED: hypothetical protein 
LOC100287563          0.024   PREDICTED: hypothetical protein 
LOC100290489          0.024   PREDICTED: hypothetical protein XP_002346789 
LOC100287563          0.024   PREDICTED: hypothetical protein XP_002343733 
LOC100288758          0.024   PREDICTED: hypothetical protein XP_002342653 
MSGN1                 0.024   mesogenin 1 
HOXA11                0.024   homeobox A11 
LOC100131397          0.024   PREDICTED: hypothetical protein 
LOC100131397          0.024   PREDICTED: hypothetical protein 
LOC100131397          0.024   PREDICTED: hypothetical protein 
UBQLN4                0.024   ataxin-1 ubiquitin-like interacting protein 
LOC100289978          0.024   PREDICTED: hypothetical protein XP_002348035 
PPRC1                 0.021   peroxisome proliferator-activated receptor gamma, co...
PNN                   0.021   pinin, desmosome associated protein 
ZNF449                0.021   zinc finger protein 449 
EN1                   0.021   engrailed homeobox 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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