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Search of human proteins with 239746332
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
sapiens]
(231 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens] 452 e-128
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens] 452 e-128
gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo ... 452 e-128
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 80 1e-15
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s... 72 5e-13
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 69 4e-12
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 69 4e-12
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 67 1e-11
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 67 1e-11
gi|50083281 KIAA1853 protein [Homo sapiens] 65 5e-11
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 65 6e-11
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 65 6e-11
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 65 6e-11
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi... 63 2e-10
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 62 3e-10
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 62 3e-10
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 60 1e-09
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 60 2e-09
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 59 3e-09
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 59 5e-09
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 58 8e-09
gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo s... 57 1e-08
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 57 2e-08
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens] 57 2e-08
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 56 2e-08
gi|46309849 hypothetical protein LOC57035 [Homo sapiens] 56 2e-08
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 55 4e-08
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 55 4e-08
gi|239756568 PREDICTED: similar to BCL2-associated transcription... 55 7e-08
gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso... 55 7e-08
>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 452 bits (1164), Expect = e-128
Identities = 231/231 (100%), Positives = 231/231 (100%)
Query: 1 MYMSRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLR 60
MYMSRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLR
Sbjct: 1 MYMSRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLR 60
Query: 61 RRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSR 120
RRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSR
Sbjct: 61 RRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSR 120
Query: 121 LRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRS 180
LRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRS
Sbjct: 121 LRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRS 180
Query: 181 RSRSLCGSGEGPGLDEVGRPVWLGSPRDRPPPQDTGRPILPLIVAGGVIAA 231
RSRSLCGSGEGPGLDEVGRPVWLGSPRDRPPPQDTGRPILPLIVAGGVIAA
Sbjct: 181 RSRSLCGSGEGPGLDEVGRPVWLGSPRDRPPPQDTGRPILPLIVAGGVIAA 231
>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 452 bits (1164), Expect = e-128
Identities = 231/231 (100%), Positives = 231/231 (100%)
Query: 1 MYMSRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLR 60
MYMSRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLR
Sbjct: 1 MYMSRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLR 60
Query: 61 RRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSR 120
RRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSR
Sbjct: 61 RRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSR 120
Query: 121 LRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRS 180
LRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRS
Sbjct: 121 LRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRS 180
Query: 181 RSRSLCGSGEGPGLDEVGRPVWLGSPRDRPPPQDTGRPILPLIVAGGVIAA 231
RSRSLCGSGEGPGLDEVGRPVWLGSPRDRPPPQDTGRPILPLIVAGGVIAA
Sbjct: 181 RSRSLCGSGEGPGLDEVGRPVWLGSPRDRPPPQDTGRPILPLIVAGGVIAA 231
>gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
sapiens]
Length = 231
Score = 452 bits (1164), Expect = e-128
Identities = 231/231 (100%), Positives = 231/231 (100%)
Query: 1 MYMSRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLR 60
MYMSRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLR
Sbjct: 1 MYMSRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLR 60
Query: 61 RRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSR 120
RRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSR
Sbjct: 61 RRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSR 120
Query: 121 LRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRS 180
LRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRS
Sbjct: 121 LRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRS 180
Query: 181 RSRSLCGSGEGPGLDEVGRPVWLGSPRDRPPPQDTGRPILPLIVAGGVIAA 231
RSRSLCGSGEGPGLDEVGRPVWLGSPRDRPPPQDTGRPILPLIVAGGVIAA
Sbjct: 181 RSRSLCGSGEGPGLDEVGRPVWLGSPRDRPPPQDTGRPILPLIVAGGVIAA 231
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 80.1 bits (196), Expect = 1e-15
Identities = 82/185 (44%), Positives = 98/185 (52%), Gaps = 27/185 (14%)
Query: 23 RASSLPRSLPRSP-RLCSRSRS-----RSRSR--SRRRSRSLRWLRRRSRSRSRPFSSGP 74
R + RS R+P R SRSR+ RSRSR +RRRSR+ +RRRSRSRS SG
Sbjct: 587 RTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGR 646
Query: 75 SGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRS----RRARSRLRLLRRFRSR 130
S P+ G S +PA G + S P R S RSRS RR RSR R RR RSR
Sbjct: 647 SRSRTPARRG--RSRSRTPARRGRSRSRTPARRSG-RSRSRTPARRGRSRSRTPRRGRSR 703
Query: 131 SLSLLRSLERLRSSLSRLRERLRRSRERE------RRRSRS-----LSRSRLRSLRSRSR 179
S SL+R R S + R R S ER+ +RRSRS + +SR+ S RSRS
Sbjct: 704 SRSLVRR-GRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSL 762
Query: 180 SRSRS 184
S RS
Sbjct: 763 SSPRS 767
Score = 78.6 bits (192), Expect = 4e-15
Identities = 79/206 (38%), Positives = 92/206 (44%), Gaps = 22/206 (10%)
Query: 22 PRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSL-RWLRRRSRSRSRPFSSGPSGPSGP 80
P + RS R+P R SRSRS RRSRS RW R RS R R S P P
Sbjct: 487 PATAKRGRSRSRTPT--KRGHSRSRSPQWRRSRSAQRWGRSRSPQR-RGRSRSPQRPGWS 543
Query: 81 SSPGGPSSGGASPASEGSAMSPPPPRSSSLRSR--SRRARSRLRLLRRFRSRSLSLLRSL 138
S G + A G + S P RSR +RR RSR R R RSRS + R
Sbjct: 544 RSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRR 603
Query: 139 ERLRSSLSRLRERLR-------RSRERERRRSRSLSRSRLRSLRSRSRSRSRSLCGSGEG 191
R R+ R R R R R+R RRRSRS S +R RS RSRSR+ +R
Sbjct: 604 SRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPAR-RSGRSRSRTPARR------- 655
Query: 192 PGLDEVGRPVWLGSPRDRPPPQDTGR 217
G P G R R P + +GR
Sbjct: 656 -GRSRSRTPARRGRSRSRTPARRSGR 680
Score = 72.8 bits (177), Expect = 2e-13
Identities = 68/186 (36%), Positives = 86/186 (46%), Gaps = 21/186 (11%)
Query: 20 PPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSG 79
P P+ L RS RS R +R+ R +S S R R RSRSR G SG
Sbjct: 1763 PSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHS 1822
Query: 80 PSSPGGPSSGGASPASEGSAMSPPPPRSSS---------LRSRS-------RRARSRLRL 123
S SS +S G + +PP R S RSRS RR+RSR L
Sbjct: 1823 RSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPL 1882
Query: 124 L--RRFRSRSLSLLRSLERLRSSLSRLRERLRR---SRERERRRSRSLSRSRLRSLRSRS 178
+ RR RSR+ + R R R+S++R R R R SR R R R+ ++R R RS +
Sbjct: 1883 ISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTT 1942
Query: 179 RSRSRS 184
R RSRS
Sbjct: 1943 RRRSRS 1948
Score = 72.8 bits (177), Expect = 2e-13
Identities = 75/182 (41%), Positives = 91/182 (50%), Gaps = 20/182 (10%)
Query: 19 PPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWL--RRRSRSRSRPFSSGPSG 76
PP R S R+ SP RSRSR+ + RRSRS L RRRSRSR+ P S S
Sbjct: 1845 PPTSRKRSRSRT---SPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSR 1901
Query: 77 PSGPSSPGGPSSGGASPASEGSAMSPPPP---RSSSLRSRSRRARSRLRL----LRRFRS 129
S S S ASP S + S PP R S R+ + R RSR R RR RS
Sbjct: 1902 -SRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRS 1960
Query: 130 RSLSLLRSLERLRSS-LSRLRERLRRS---RERERRRSRSLSRSRLRSLRS---RSRSRS 182
R+ + R R R+S ++R R R R S R R R R+ ++R R RS S R RSRS
Sbjct: 1961 RTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRS 2020
Query: 183 RS 184
R+
Sbjct: 2021 RT 2022
Score = 69.7 bits (169), Expect = 2e-12
Identities = 76/189 (40%), Positives = 85/189 (44%), Gaps = 35/189 (18%)
Query: 33 RSPRLCSRSRSRSR---SRSR---RRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGP 86
RSP+ RSRS R SRSR RR RS R RS SRS P + G S P+ G
Sbjct: 526 RSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRS-PATRGRSRSRTPARRG-- 582
Query: 87 SSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSL- 145
S +PA S P R S R+ +RR RSR R R RSR+ S +R R RS
Sbjct: 583 RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPAR 642
Query: 146 ---------------SRLRERLRRSRERER----RRSRSLSRSRLRSLRSRS------RS 180
SR R RR R R R R RS SR+ R RSRS RS
Sbjct: 643 RSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRS 702
Query: 181 RSRSLCGSG 189
RSRSL G
Sbjct: 703 RSRSLVRRG 711
Score = 63.5 bits (153), Expect = 1e-10
Identities = 70/198 (35%), Positives = 84/198 (42%), Gaps = 21/198 (10%)
Query: 7 SLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSR 66
S P S P R+ S P + PR R++S S S ++ + R L RRSRS
Sbjct: 1581 SSPEVDSKSRLSPRRSRSGSSPE-VKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSG 1639
Query: 67 SRPFSSGPSGPSGPSSPGGPSSGGAS-PASEGSAMSPPPPRSSSLRSRSRRARS------ 119
S GPS S+ P S A GS SP P S R R +RS
Sbjct: 1640 SSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTR 1699
Query: 120 RLRLLRRFRSRSLS---LLRSLERLRSSLS-RLRERLRRSRERERRRSRSLSRSRLRSLR 175
+ RL RR RS S S R+ R R S S E +SR RRRS S R++ S R
Sbjct: 1700 KARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRR 1759
Query: 176 SRS---------RSRSRS 184
RS RSRSRS
Sbjct: 1760 GRSPSPKPRGLQRSRSRS 1777
Score = 63.5 bits (153), Expect = 1e-10
Identities = 60/158 (37%), Positives = 78/158 (49%), Gaps = 8/158 (5%)
Query: 29 RSLPRSPRLCSRSRSRSRSRSRRRSRSLR--WLRRRSRSRSRPFSSGPSGPSGPSSPGGP 86
RS R+P RSRSR+ +RRRSRS RRRSRSR+ P + S
Sbjct: 1934 RSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRR 1993
Query: 87 SSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLS 146
S SP + + S R+S + R R+R+ + RR RSR+ L R R RS L+
Sbjct: 1994 SRSRTSPVTRRRSRS----RTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLA 2049
Query: 147 RLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRS 184
+R R R R R RSL+RS ++R RS S S S
Sbjct: 2050 -IRRRSRSRTPRTARGKRSLTRSP-PAIRRRSASGSSS 2085
Score = 62.4 bits (150), Expect = 3e-10
Identities = 84/229 (36%), Positives = 97/229 (42%), Gaps = 53/229 (23%)
Query: 12 SSPLSWPPPPPRASSLP--RSLPRSPRLCSRSRSRSRSR--SRRRSRSLRWL-RRRSRSR 66
+SP W RAS RS R+P L SR RSRSR+ SRRRSRS + RRRSRSR
Sbjct: 1856 TSPAPWKRSRSRASPATHRRSRSRTP-LISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSR 1914
Query: 67 SRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPP----------PRSSSLRSRSR- 115
+ P S S P S S PP P + RSRSR
Sbjct: 1915 ASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRT 1974
Query: 116 ----RARSRLRLL----RRFRSRSLSLLRSLERLRSS-LSRLRERLR------------- 153
R RSR R RR RSR+ + R R R+S ++R R R R
Sbjct: 1975 SPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRT 2034
Query: 154 ------RSRERE----RRRSRSLSRSRLRSLRSRSRS----RSRSLCGS 188
RSR R RRRSRS + R RS +RS R RS GS
Sbjct: 2035 PLLPRKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGS 2083
Score = 60.5 bits (145), Expect = 1e-09
Identities = 60/169 (35%), Positives = 78/169 (46%), Gaps = 13/169 (7%)
Query: 22 PRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPS 81
P R+ R R SR+ SR RSR R+ W +RSRSR+ P + S P
Sbjct: 1825 PARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPW--KRSRSRASPATHRRSRSRTPL 1882
Query: 82 SPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERL 141
S SP S + S R+S R RSR S + RR RSR+ + R R
Sbjct: 1883 ISRRRSRSRTSPVSRRRSRS----RTSVTRRRSRSRASPVSR-RRSRSRTPPVTRRRSRS 1937
Query: 142 RSSLSRLRERLRR---SRERERRRSRSLSRSRLRSLRS---RSRSRSRS 184
R+ +R R R R +R R R R+ ++R R RS S R RSRSR+
Sbjct: 1938 RTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRT 1986
Score = 57.0 bits (136), Expect = 1e-08
Identities = 75/230 (32%), Positives = 93/230 (40%), Gaps = 27/230 (11%)
Query: 9 PRPSSPLSWPPPPPRASSLP---RSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRS 65
P ++PLS P P + + P RS P+SP +S S S + +
Sbjct: 380 PLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKV--------- 430
Query: 66 RSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRR-ARSRL-RL 123
SR SS P P +PG +SP S+ + S + SRR RSR
Sbjct: 431 -SRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPAT 489
Query: 124 LRRFRSRSLS-LLRSLERLRSSL---SRLRERLRRSRERERR-RSRS-----LSRSRLRS 173
+R RSRS + R R RS SR +R RSR +RR RSRS SRSR
Sbjct: 490 AKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQ 549
Query: 174 LRSRSRS--RSRSLCGSGEGPGLDEVGRPVWLGSPRDRPPPQDTGRPILP 221
R RSRS R RS S G P G R R P + R P
Sbjct: 550 RRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTP 599
Score = 56.6 bits (135), Expect = 2e-08
Identities = 63/183 (34%), Positives = 79/183 (43%), Gaps = 17/183 (9%)
Query: 16 SWPPPPPRASSLPR--SLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSG 73
S P P ++ + PR S SP L ++R RSRS S R R R R P S
Sbjct: 1674 SSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETR-SRTPPRHRRSPSVSS 1732
Query: 74 PSGPSGPSSPGGPSSGGASPASEGSA---MSPPPPRSSSLRSRSRRARSRLRLLRRFRSR 130
P P+ S +SP ++ ++ SP P RSRSR R + R RR R R
Sbjct: 1733 PE-PAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRR-RDR 1790
Query: 131 SLSLLRSLERLRSSLSRLRERLR-RSRERERRRSRSLSRSRLRSLRSRSRSRSRSLCGSG 189
S S S SR R+R R RSR RRR S SR + + SR+ SR G
Sbjct: 1791 SGS--------SQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRS 1842
Query: 190 EGP 192
P
Sbjct: 1843 RTP 1845
Score = 53.9 bits (128), Expect = 1e-07
Identities = 54/158 (34%), Positives = 71/158 (44%), Gaps = 15/158 (9%)
Query: 29 RSLPRSPRLCSRSRSRSRS----RSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPG 84
RS R+P + +R RSRSR+ R R RSR+ RRRSRSR+ P + S
Sbjct: 1945 RSRSRTPPV-TRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTR 2003
Query: 85 GPSSGGASPASEGSAMSPPPPRSSSLRSRSR---------RARSRLRLLRRFRSRSLSLL 135
S SP + + S PP + RSRSR R+RS L + RR RSR+
Sbjct: 2004 RRSRSRTSPVTRRRSRSRTPP-AIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTA 2062
Query: 136 RSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRS 173
R L S +R R +R RS + +R S
Sbjct: 2063 RGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHS 2100
Score = 52.0 bits (123), Expect = 4e-07
Identities = 62/172 (36%), Positives = 72/172 (41%), Gaps = 25/172 (14%)
Query: 21 PPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGP 80
P R S RS R+P RSRSR+ +R R RSRS RR RSRSR + G S
Sbjct: 640 PARRSGRSRS--RTPARRGRSRSRTPAR-RGRSRSRTPARRSGRSRSR--TPARRGRSRS 694
Query: 81 SSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLER 140
+P S S G + S P R S S R RR RS S S E
Sbjct: 695 RTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNS-----SPEM 749
Query: 141 LRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRSLCGSGEGP 192
+S +S RRSR RS++ SR LR RSL GS P
Sbjct: 750 KKSRISS-----RRSRSLSSPRSKAKSRLSLR----------RSLSGSSPCP 786
Score = 51.2 bits (121), Expect = 7e-07
Identities = 69/197 (35%), Positives = 86/197 (43%), Gaps = 29/197 (14%)
Query: 21 PPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSR-PFSSGPSGPSG 79
P R S RS R+P R RSRSR+ R RSRS R L RR RS SR P G SG S
Sbjct: 674 PARRSGRSRS--RTP--ARRGRSRSRTPRRGRSRS-RSLVRRGRSHSRTPQRRGRSGSSS 728
Query: 80 PSSPGGPSS-----GGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSL 134
+S +SP + S +S RS SL S +A+SRL L RSLS
Sbjct: 729 ERKNKSRTSQRRSRSNSSPEMKKSRIS--SRRSRSLSSPRSKAKSRLSL-----RRSLSG 781
Query: 135 LRSLERLRSSLSRLRERLRRSRERER-----RRSRSLS------RSRLRSLRSRSRSRSR 183
+ +S R R S+ + + RRSRS S +S+ S +S S S
Sbjct: 782 SSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPH 841
Query: 184 SLCGSGEGPGLDEVGRP 200
SG P + P
Sbjct: 842 PKVKSGTPPRQGSITSP 858
Score = 51.2 bits (121), Expect = 7e-07
Identities = 56/172 (32%), Positives = 63/172 (36%), Gaps = 11/172 (6%)
Query: 19 PPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPS 78
P P ++ P P R R S S S S S S S S SS S S
Sbjct: 2582 PTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSS-----SSSSSSSSSSSSSSSSSS 2636
Query: 79 GPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFR-SRSLSLLRS 137
SS SS SPA G P P RR+RS + + R SRSLS
Sbjct: 2637 SSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPV 2696
Query: 138 LERLRSSLSRLRERLRRSRERERRR-----SRSLSRSRLRSLRSRSRSRSRS 184
R S R++ S ER RR SRS S R R S R RS
Sbjct: 2697 ERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRRRETPSPRPMRHRS 2748
Score = 45.8 bits (107), Expect = 3e-05
Identities = 69/214 (32%), Positives = 86/214 (40%), Gaps = 26/214 (12%)
Query: 1 MYMSRLSLPRPSSPLSWPPPPPRAS-SLPRSLPRSPRLCSRSRS-----RSRSRSRRRSR 54
M SR+S R S LS P ++ SL RSL S C + +S RSRS S +
Sbjct: 749 MKKSRIS-SRRSRSLSSPRSKAKSRLSLRRSLSGSSP-CPKQKSQTPPRRSRSGSSQPKA 806
Query: 55 SLRWLRRRSRSRSRP----FSSGPSGPSGPSSPGGPSSGGASPASEGSAMSP-------- 102
R RRSRS S P S PS S SS P +P +GS SP
Sbjct: 807 KSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVT 866
Query: 103 PPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLR------ERLRRSR 156
P RS S +SR S ++S R S SR + + R
Sbjct: 867 PQRRSCFESSPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPR 926
Query: 157 ERERRRSRSLSRSRLRSLRSRSRSRSRSLCGSGE 190
+R S S S SR+ S + RSRS S C + E
Sbjct: 927 QRSHSGSSSPSPSRVTSRTTPRRSRSVSPCSNVE 960
Score = 45.1 bits (105), Expect = 5e-05
Identities = 57/197 (28%), Positives = 80/197 (40%), Gaps = 12/197 (6%)
Query: 24 ASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSP 83
+S P++LP++PR RSRS S ++ L R RS S SS +
Sbjct: 1482 SSPEPKALPQTPR----PRSRSPSSPELNNKCLTPQRERSGSE----SSVDQKTVARTPL 1533
Query: 84 GGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERL-- 141
G S G+S + + P RS S S +A++R L +R RS S + S RL
Sbjct: 1534 GQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSP 1593
Query: 142 -RSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRSLCGSGEGPGLDEVGRP 200
RS E + R R +S S S ++ R+ R S +G G G
Sbjct: 1594 RRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSS 1653
Query: 201 VWLGSPRDRPPPQDTGR 217
SP + PP T R
Sbjct: 1654 STESSP-EHPPKSRTAR 1669
Score = 43.5 bits (101), Expect = 2e-04
Identities = 52/173 (30%), Positives = 70/173 (40%), Gaps = 13/173 (7%)
Query: 25 SSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRP-----FSSGPSGPSG 79
S + L P + RS S S ++++ LR+RSRS S P P
Sbjct: 1539 SGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRS 1598
Query: 80 PSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRS--RSLSLLRS 137
SSP A+P ++ + S P P++ + R+ RR+RS R S S S S
Sbjct: 1599 GSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESS 1658
Query: 138 LERLRSSLSRLR------ERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRS 184
E S + R E +SR RRRS S R R RSRS S
Sbjct: 1659 PEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSAS 1711
Score = 41.2 bits (95), Expect = 8e-04
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 15/154 (9%)
Query: 12 SSPLSWPPPPPRASSLPRSLPRS---PRLCSRSRSRS--RSRSRRRSRSLRWLRRRSRSR 66
+SP++ R S + R RS P + RSRSR+ R R RSRS +RRRSRSR
Sbjct: 1998 TSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSR 2057
Query: 67 S-------RPFSSGPSGPSGPSSPGGPSSGGAS---PASEGSAMSPPPPRSSSLRSRSRR 116
+ R + P S+ G S S PA+ + S PP + + S
Sbjct: 2058 TPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALNSSRMSCF 2117
Query: 117 ARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRE 150
+R + R RS +L L R+ +S L++
Sbjct: 2118 SRPSMSPTPLDRCRSPGMLEPLGSSRTPMSVLQQ 2151
Score = 40.8 bits (94), Expect = 0.001
Identities = 55/171 (32%), Positives = 70/171 (40%), Gaps = 22/171 (12%)
Query: 31 LPRSPRLCSRSRSRSRSRSRRRSRSLRWL-----------RRRSRSRSRPFSSGPSGPSG 79
LPR+P SRS S R + S L R SR RS SS P +
Sbjct: 1431 LPRTPSRRSRSGSSPGLRDGSGTPSRHSLSGSSPGMKDIPRTPSRGRSECDSS-PEPKAL 1489
Query: 80 PSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLL---- 135
P +P S +SP ++P RS S S ++ +R L +R RS S L
Sbjct: 1490 PQTPRPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDVKP 1549
Query: 136 --RSLERLRSSLSRLRERLRRSRERERRRSRSL----SRSRLRSLRSRSRS 180
ER S S + R+ R+R RS S S+SRL RSRS S
Sbjct: 1550 SASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGS 1600
Score = 38.1 bits (87), Expect = 0.006
Identities = 50/173 (28%), Positives = 62/173 (35%), Gaps = 29/173 (16%)
Query: 55 SLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMS----------PPP 104
+L+ + R S S SS S S SS SSG +S SEGS++ P P
Sbjct: 2523 ALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSP 2582
Query: 105 PRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSR 164
+ R R R+ RS S S S SS S S
Sbjct: 2583 TPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSS----------------SS 2626
Query: 165 SLSRSRLRSLRSRSRSRSRSLCGSGEGPGLDEVGRPVWLGSPRDRPPPQDTGR 217
S S S S S S S S S S PG + +P SP+ PP + R
Sbjct: 2627 SSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKP---ASPKKPPPGERRSR 2676
Score = 35.0 bits (79), Expect = 0.054
Identities = 42/149 (28%), Positives = 58/149 (38%), Gaps = 28/149 (18%)
Query: 98 SAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLR----SLERLRSSLSRLRERLR 153
S+ SP P + + + R RS RR R +S + S + R S + R
Sbjct: 179 SSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKR 238
Query: 154 RSRERERRRSRSL-----SRSRLRSL---------RSRSRSRS-------RSLCGSGEGP 192
+S++++R+RSRS SR RS SRSRSRS +L G P
Sbjct: 239 KSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSP 298
Query: 193 GLDEVGRPVWLGSPRDRPPPQDTGRPILP 221
G +P P T RP P
Sbjct: 299 ASGRRGEG---DAPFSEPGTTSTQRPSSP 324
Score = 33.9 bits (76), Expect = 0.12
Identities = 48/206 (23%), Positives = 71/206 (34%), Gaps = 39/206 (18%)
Query: 19 PPPPRASSLPR--SLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSG 76
P PP+ SL R S RSP + + + + R RR S R+ S+ + S
Sbjct: 165 PEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRS---- 220
Query: 77 PSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLR 136
S + + SP P + + R+ RSRS +
Sbjct: 221 --------------ESESKKRKHRSPTPKSKRKSKDKKRK-----------RSRSTTPAP 255
Query: 137 SLERLRSSLSRLRERLRRSRERERRRSRS-LSRSRLRSLRSRSRSRSRSLCGSGEGPGLD 195
R S S S + R RSRS +++ +L RS S + G G+ P
Sbjct: 256 KSRRAHRSTS---ADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAP--- 309
Query: 196 EVGRPVWLGSPRDRPPPQDTGRPILP 221
P + R P T +P P
Sbjct: 310 -FSEPGTTSTQRPSSPETATKQPSSP 334
Score = 33.1 bits (74), Expect = 0.21
Identities = 43/135 (31%), Positives = 55/135 (40%), Gaps = 19/135 (14%)
Query: 4 SRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRS-----RSR-SRRRSRSLR 57
SR + R S P R+ S +S RSRS S +SR S RRSRSL
Sbjct: 704 SRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLS 763
Query: 58 WLRRRSRSR---SRPFS-SGPSGPSGPSSPGGPSSGGAS---------PASEGSAMSPPP 104
R +++SR R S S P +P S G+S P S+ SPPP
Sbjct: 764 SPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPP 823
Query: 105 PRSSSLRSRSRRARS 119
+ S SR + S
Sbjct: 824 KQKSKTPSRQSHSSS 838
Score = 30.4 bits (67), Expect = 1.3
Identities = 39/107 (36%), Positives = 46/107 (42%), Gaps = 15/107 (14%)
Query: 4 SRLSLPRPSSPLSWPPPPPRASSLPRSLPR-------SPRLCSRSRSRSRSRSRRRSRSL 56
SR S S P PPR S S P+ SPR S S S S S SR SR+
Sbjct: 887 SRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTT 946
Query: 57 RWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPP 103
RRSRS S P S+ S P SG +SP ++ +PP
Sbjct: 947 P---RRSRSVS-PCSNVESR----LLPRYSHSGSSSPDTKVKPETPP 985
Score = 29.6 bits (65), Expect = 2.3
Identities = 25/90 (27%), Positives = 32/90 (35%)
Query: 18 PPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGP 77
P ++ R RS +SR RS S + S R RSRS + +
Sbjct: 234 PKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAG 293
Query: 78 SGPSSPGGPSSGGASPASEGSAMSPPPPRS 107
PS G G +P SE S P S
Sbjct: 294 RSPSPASGRRGEGDAPFSEPGTTSTQRPSS 323
>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
sapiens]
Length = 434
Score = 71.6 bits (174), Expect = 5e-13
Identities = 60/154 (38%), Positives = 69/154 (44%), Gaps = 4/154 (2%)
Query: 34 SPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPS---SGG 90
SPR SRSRSRSR R R R+ RSRSR SS S +
Sbjct: 32 SPRASKHHYSRSRSRSRERKRKSDNEGRKHRSRSRSKEGRRHESKDKSSKKHKSEEHNDK 91
Query: 91 ASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRE 150
+ +G R R SR R R RSR + S SR RE
Sbjct: 92 EHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRE 151
Query: 151 RLR-RSRERERRRSRSLSRSRLRSLRSRSRSRSR 183
R + RSR RER++SRS SR R R +RSRSRSRSR
Sbjct: 152 RKKSRSRSRERKKSRSRSRERKRRIRSRSRSRSR 185
Score = 69.7 bits (169), Expect = 2e-12
Identities = 72/165 (43%), Positives = 81/165 (49%), Gaps = 24/165 (14%)
Query: 39 SRSRSRSRSRSRRRSRSLRWLRRRSRSR-----------SRPFSSGPSGPSGPSSPGGPS 87
SRSRSRSR R R+ R R RSRS+ S+ S SS G
Sbjct: 41 SRSRSRSRERKRKSDNEGRKHRSRSRSKEGRRHESKDKSSKKHKSEEHNDKEHSSDKGRE 100
Query: 88 SGGASPASEGSAMSPPPPRS---SSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSS 144
+S E S S RSRSR R R R R +SRS RS ER + S
Sbjct: 101 RLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRS----RSRER-KKS 155
Query: 145 LSRLRERLR---RSRERERR-RSRSLSRSRLRS-LRSRSRSRSRS 184
SR RER + RSRER+RR RSRS SRSR R RSRSR+RSRS
Sbjct: 156 RSRSRERKKSRSRSRERKRRIRSRSRSRSRHRHRTRSRSRTRSRS 200
Score = 57.0 bits (136), Expect = 1e-08
Identities = 57/140 (40%), Positives = 65/140 (46%), Gaps = 36/140 (25%)
Query: 33 RSPRLCSRSRSRSRSRSR-RRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGA 91
R R SR RS SRSRSR RR RS R++SRSRSR
Sbjct: 114 RKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKS------------------ 155
Query: 92 SPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRS-SLSRLRE 150
RS S + R+RSR R RR RSRS S R R RS S +R R
Sbjct: 156 --------------RSRSRERKKSRSRSRER-KRRIRSRSRSRSRHRHRTRSRSRTRSRS 200
Query: 151 RLRRSR-ERERRRSRSLSRS 169
R R+ R E+ RR SRSLSR+
Sbjct: 201 RDRKKRIEKPRRFSRSLSRT 220
Score = 41.6 bits (96), Expect = 6e-04
Identities = 27/46 (58%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 23 RASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSR 68
R S RS R R+ SRSRSRSR R R RSRS R RSRSR R
Sbjct: 162 RKKSRSRSRERKRRIRSRSRSRSRHRHRTRSRS----RTRSRSRDR 203
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 68.6 bits (166), Expect = 4e-12
Identities = 71/192 (36%), Positives = 88/192 (45%), Gaps = 39/192 (20%)
Query: 39 SRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASE-- 96
SRSRSRS SRSR +SRS RS+SRSR PS S S G S +
Sbjct: 218 SRSRSRSGSRSRSKSRS------RSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKD 271
Query: 97 ------------GSAMSPPPPR-SSSLRSRSR---------------RARSRLRLLRRFR 128
G S P R S +SRSR R RS+ + LR+ R
Sbjct: 272 QAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSR 331
Query: 129 SRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSR-SLCG 187
SRS S S R RS S+ +++ R+ R+R R SRS SRSR +S RSR R R S G
Sbjct: 332 SRSRSKGGSRSRSRSR-SKSKDK-RKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAG 389
Query: 188 SGEGPGLDEVGR 199
S + ++ R
Sbjct: 390 SSKKKKKEDTDR 401
Score = 67.4 bits (163), Expect = 1e-11
Identities = 60/163 (36%), Positives = 77/163 (47%), Gaps = 2/163 (1%)
Query: 23 RASSLPRSLPRSPRLC-SRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPS 81
R+ S RS R R SRS S S S+ RSRS R RS+SRSR S S
Sbjct: 189 RSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSR 248
Query: 82 SPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERL 141
SP S S ++ S +++ + + R R +S+S S RS ER
Sbjct: 249 SPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERR 308
Query: 142 RSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRS 184
R RS+E+ R+SRS SRS+ S RSRSRSRS+S
Sbjct: 309 VEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGS-RSRSRSRSKS 350
Score = 62.4 bits (150), Expect = 3e-10
Identities = 73/200 (36%), Positives = 85/200 (42%), Gaps = 57/200 (28%)
Query: 39 SRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASE-- 96
S+SRSRSRS SR RS+S R RS+SRSR PS S S G S +
Sbjct: 216 SKSRSRSRSGSRSRSKS----RSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKD 271
Query: 97 ------------GSAMSPPPPR-SSSLRSRSR---------------RARSRLRLLRRFR 128
G S P R S +SRSR R RS+ + LR+ R
Sbjct: 272 QAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSR 331
Query: 129 SRSLSL--LRSLERLRSSLSRLRERLRRSRERERRRSRSLS---RSRLRSL--------- 174
SRS S RS R RS R+ +RSRE R RSRS S RSR R
Sbjct: 332 SRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSS 391
Query: 175 ---------RSRSRSRSRSL 185
RS+SRS SRS+
Sbjct: 392 KKKKKEDTDRSQSRSPSRSV 411
Score = 60.1 bits (144), Expect = 2e-09
Identities = 59/158 (37%), Positives = 71/158 (44%), Gaps = 17/158 (10%)
Query: 39 SRSRSRSRSRSRR--RSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASE 96
SRSRSRS+S+ +R R RS R RSRSRS+ S G S G SS
Sbjct: 342 SRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAG--SSKKKKKEDT 399
Query: 97 GSAMSPPPPRSSSLRSRSRRARSRLRLLR----------RFRSRSLSLLRSLERLRSSLS 146
+ S P RS S ++ S R R RSRS S +S L S
Sbjct: 400 DRSQSRSPSRSVSKEREHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESR 459
Query: 147 RLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRS 184
+ ++R R + RSRS SRS RSRSRS SRS
Sbjct: 460 SRSKSASKTRSRSKSRSRSASRS---PSRSRSRSHSRS 494
Score = 49.3 bits (116), Expect = 3e-06
Identities = 55/179 (30%), Positives = 75/179 (41%), Gaps = 8/179 (4%)
Query: 14 PLSWPPPPPRASSLPRSLPRSPRL-------CSRSRSRSRSRSRRRSRSLRWLRRRSRSR 66
P S P ++ S RS + R+ SR RS+ +S + RSRS RSRSR
Sbjct: 286 PKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSR 345
Query: 67 SRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRR 126
SR S S S + SE S S + S+ ++ R R
Sbjct: 346 SRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSR 405
Query: 127 FRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLR-SLRSRSRSRSRS 184
SRS+S R + SS R + + RSRS S S+ + +L S SRSRS+S
Sbjct: 406 SPSRSVSKEREHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKS 464
Score = 47.0 bits (110), Expect = 1e-05
Identities = 33/73 (45%), Positives = 40/73 (54%)
Query: 112 SRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRL 171
SR RR+ SR R R RSRS +S R SS S + RSR R RS+S SRS+
Sbjct: 179 SRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQS 238
Query: 172 RSLRSRSRSRSRS 184
RS + +SRS S
Sbjct: 239 RSRSKKEKSRSPS 251
Score = 35.8 bits (81), Expect = 0.032
Identities = 27/50 (54%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 140 RLRSSLSRLRERLR-RSRERERRRSRSLSRSRLRSLRSRSRSRSRSLCGS 188
R R S SR R R RSR R R+SRS S S S S S+SRSRS GS
Sbjct: 180 RRRRSYSRSRSHSRSRSRSRHSRKSRSRSGS---SKSSHSKSRSRSRSGS 226
Score = 35.4 bits (80), Expect = 0.042
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 30 SLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRS 67
+LP R S+S S++RSRS+ RSRS RSRSRS
Sbjct: 453 NLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSRS 490
Score = 35.0 bits (79), Expect = 0.054
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 2/119 (1%)
Query: 26 SLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGG 85
S R R + S + + R +SRS + R ++ SS G G S G
Sbjct: 377 SRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQREG-RGESENAG 435
Query: 86 PSSGGASPASEGSAMSPPPPRSSSLRSRS-RRARSRLRLLRRFRSRSLSLLRSLERLRS 143
+ S + S P P S RS+S + RSR + R SRS S RS RS
Sbjct: 436 TNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSRSHSRS 494
Score = 34.3 bits (77), Expect = 0.092
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 23 RASSLPRSLPRSP-----RLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSR 68
R+ S +S P P R S S++RSRS+SR RS S R RSRS SR
Sbjct: 443 RSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSRSHSR 493
Score = 30.8 bits (68), Expect = 1.0
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 130 RSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRS 184
R+L L E + + ++ R R RSRS SRSR RS SR +SRSRS
Sbjct: 155 RALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSR-KSRSRS 208
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 68.6 bits (166), Expect = 4e-12
Identities = 80/209 (38%), Positives = 90/209 (43%), Gaps = 46/209 (22%)
Query: 18 PPPPP---------------RASSLPRSLPRSPRLCSRSRSRSRSRSRR----------- 51
PP PP R+SS S S SRS SRS SRSRR
Sbjct: 356 PPAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHA 415
Query: 52 RSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLR 111
RSRS W RSRSRSR +S S G SGG S +G S P R
Sbjct: 416 RSRSRSW--SRSRSRSRRYSRS-------RSRGRRHSGGGS--RDGHRYSRSPARRGGYG 464
Query: 112 SRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRL 171
R RR+RSR R+R R L SS SR L SR R RSRS S S
Sbjct: 465 PR-RRSRSRSHSGDRYRRGG----RGLRHHSSSRSRSSWSLSPSRSRSLTRSRSHSPSPS 519
Query: 172 RSLRSRSRSRSRSLCGSGEGPGLDEVGRP 200
+S RSRSRSRS+S P +++ RP
Sbjct: 520 QS-RSRSRSRSQS---PSPSPAREKLTRP 544
Score = 58.2 bits (139), Expect = 6e-09
Identities = 65/183 (35%), Positives = 76/183 (41%), Gaps = 36/183 (19%)
Query: 33 RSP-RLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSG---------PSGPSS 82
RSP S SRSRSRS + R + ++ S ++ + P P
Sbjct: 302 RSPSESSSESRSRSRSPTPGREEKITFITSFGGSDEEAAAAAAAAAASGVTTGKPPAPPQ 361
Query: 83 PGGPSSGGASPA---SEGSAMSPPPPRSSSLRS------RSRRARSRLRLLRRFRSRSLS 133
PGGP+ G + A S S+ S R+SS RS RSRR R R RSRS S
Sbjct: 362 PGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRS 421
Query: 134 LLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRS---------RSRSRSRS 184
RS R R R RSR R RR S SR R RS R RSRSRS
Sbjct: 422 WSRSRSRSR--------RYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSRS 473
Query: 185 LCG 187
G
Sbjct: 474 HSG 476
Score = 53.5 bits (127), Expect = 1e-07
Identities = 60/178 (33%), Positives = 80/178 (44%), Gaps = 23/178 (12%)
Query: 30 SLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSG 89
S RS S SRSRS +RSR S S R RSRSRS+ S P+ P+ G
Sbjct: 492 SRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREKLTRPAASPAVG 551
Query: 90 ----GASPAS--EGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLER--- 140
PA+ E A P L+ R ++A +R + ++ + + ER
Sbjct: 552 EKLKKTEPAAGKETGAAKPKLTPQEKLKLRMQKALNRQFKADKKAAQEKMIQQEHERQER 611
Query: 141 ---LRSSLSRLRERLRRSRERER--------RRSRSLSRSRLR---SLRSRSRSRSRS 184
LR+ ++R + R RE+ER R+SRS S R S R RSRSRSRS
Sbjct: 612 EDELRAMARKIRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSSRRRSRSRSRS 669
Score = 51.2 bits (121), Expect = 7e-07
Identities = 65/195 (33%), Positives = 74/195 (37%), Gaps = 53/195 (27%)
Query: 45 SRSRSRRRSRSLRWLRRRSR----------------------------SRSRPFSSGPS- 75
S RSRR+ R R R R R SRSR S P
Sbjct: 263 SGRRSRRQRREFREKRLRGRKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSPTPGR 322
Query: 76 ----------GPSGPSSPGGPSSGGASPASEGSAMSPPPP------RSSSLRSRSRRARS 119
G S + ++ AS + G +PP P R++S R RS + S
Sbjct: 323 EEKITFITSFGGSDEEAAAAAAAAAASGVTTGKPPAPPQPGGPAPGRNASARRRSSSSSS 382
Query: 120 RLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLR-SRS 178
R SRS S RS SS SR RS R RSRS SRSR RS R SRS
Sbjct: 383 SSSASRTSSSRSSS--RS-----SSRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRYSRS 435
Query: 179 RSRSRSLCGSGEGPG 193
RSR R G G G
Sbjct: 436 RSRGRRHSGGGSRDG 450
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 67.4 bits (163), Expect = 1e-11
Identities = 71/200 (35%), Positives = 88/200 (44%), Gaps = 22/200 (11%)
Query: 4 SRLSLPRPSSPLSWPPPPPRASSLPRSL-PRSPRLCSRSRS------RSRSRSRRRSRSL 56
SR P + S P +A RS P R CSRSRS RSRSRS ++R
Sbjct: 402 SRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKARDH 461
Query: 57 RWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSS-----GGASPASEGSAMSPPPPRSSSLR 111
R +++R R S PS S G PS SP+ E RSSS
Sbjct: 462 SRSRSPNKARDRSRSRSPSKERDHSQLGSPSKERDHRRSRSPSKERQCRQ---SRSSSKE 518
Query: 112 SRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRR--SRERERRRSRSLSRS 169
RR+RS + +R +SRS + R + RS R R S+ER+RRR RS S+
Sbjct: 519 RDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERDRRRWRSPSKE 578
Query: 170 RLR-----SLRSRSRSRSRS 184
R R S R SRSRS
Sbjct: 579 RERRQSRSSSEERDHSRSRS 598
Score = 58.5 bits (140), Expect = 5e-09
Identities = 55/163 (33%), Positives = 70/163 (42%), Gaps = 21/163 (12%)
Query: 39 SRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPS------GPSGPSSPGGPSSGGAS 92
S+ +S+++SR+ RR RS W R S+ RS S S G S P G S G S
Sbjct: 336 SKGKSQNQSRTPRRGRSHNWSRNPSKERSHSHSRSSSKERDHRGSSSPRKESGRSQSG-S 394
Query: 93 PASEGSAMSPPPPRSSSLRSRSR-------RARSRLRLLRRFRSRSLSLLRSLERLRSSL 145
P + P + RSRSR R+RSR R SRS S ++ +R RS
Sbjct: 395 PNKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDRSRSRS 454
Query: 146 SRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRSLCGS 188
RSR + R RS S RS S+ R S GS
Sbjct: 455 PNKARDHSRSRSPNKARDRSRS-------RSPSKERDHSQLGS 490
Score = 56.6 bits (135), Expect = 2e-08
Identities = 66/180 (36%), Positives = 80/180 (44%), Gaps = 21/180 (11%)
Query: 23 RASSLPRS--------LPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGP 74
R SS PR P R SRSRS +++R R RSRS R RSRSRS P +
Sbjct: 378 RGSSSPRKESGRSQSGSPNKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRS-PNKARD 436
Query: 75 SGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSR-----RARSRLRLLRRFRS 129
S S SP P + RSRSR R S+L + R
Sbjct: 437 CSRSRSPYKARDRSRSRSPNKARDHSRSRSPNKARDRSRSRSPSKERDHSQLGSPSKERD 496
Query: 130 RSLSLLRSLER-LRSSLSRLRERLRR-----SRERERRRSRSLSRSRLRSLRSRSRSRSR 183
S S ER R S S +ER R S+ER+RR+SRS ++ R RS +SRS S R
Sbjct: 497 HRRSRSPSKERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRS-QSRSPSEER 555
Score = 53.9 bits (128), Expect = 1e-07
Identities = 68/204 (33%), Positives = 87/204 (42%), Gaps = 31/204 (15%)
Query: 10 RPSS-PLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSR 68
RP S S P R+ S R+ R R S R+ SR+RSR R L + R S+SRS
Sbjct: 277 RPQSHSQSRSPRRSRSGSQKRTHSRV-RSHSWKRNHSRARSRTRKGILSQMGRHSQSRSH 335
Query: 69 P------------------FSSGPS-----GPSGPSSPGGPSSGGASPASEGSAMSPPPP 105
+S PS S SS G +SP E P
Sbjct: 336 SKGKSQNQSRTPRRGRSHNWSRNPSKERSHSHSRSSSKERDHRGSSSPRKESGRSQSGSP 395
Query: 106 RSSSLRSRSR---RARSRLRLLRRFRSRSLSLLRSLERLRS-SLSRLRERLR-RSRERER 160
SRSR +AR R R +++R S RS + R S SR + R RSR R
Sbjct: 396 NKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDRSRSRSP 455
Query: 161 RRSRSLSRSRLRSLRSRSRSRSRS 184
++R SRSR + ++R RSRSRS
Sbjct: 456 NKARDHSRSRSPN-KARDRSRSRS 478
Score = 50.4 bits (119), Expect = 1e-06
Identities = 53/157 (33%), Positives = 73/157 (46%), Gaps = 13/157 (8%)
Query: 39 SRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGS 98
SR +S S+SRS RRSRS R SR RS + S + G S G S+
Sbjct: 276 SRPQSHSQSRSPRRSRSGSQKRTHSRVRSHSWKRNHSRARSRTRKGILSQMGRH--SQSR 333
Query: 99 AMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRS--- 155
+ S ++ S R R+ + R + RS S S S ER S R+ RS
Sbjct: 334 SHSKGKSQNQSRTPRRGRSHNWSRNPSKERSHSHSRSSSKERDHRGSSSPRKESGRSQSG 393
Query: 156 ---RERERRRSRSLSRSRLRS-----LRSRSRSRSRS 184
++R+ RSRS +++R RS ++R RSRSRS
Sbjct: 394 SPNKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRS 430
Score = 44.7 bits (104), Expect = 7e-05
Identities = 64/188 (34%), Positives = 77/188 (40%), Gaps = 34/188 (18%)
Query: 4 SRLSLPRPSSPLSWPPPPPRASSLPRSLPRSP-----RLCSRSRSRSRSRSRRRSRSLRW 58
SR P + S P +A RS RSP R SRS S+ R S+ S S
Sbjct: 438 SRSRSPYKARDRSRSRSPNKARDHSRS--RSPNKARDRSRSRSPSKERDHSQLGSPSKER 495
Query: 59 LRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRAR 118
RRSRS PS S S+ RS S +R +
Sbjct: 496 DHRRSRS--------------------PSKERQCRQSRSSSKERDHRRSRSPSKERQRRQ 535
Query: 119 SRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRR-----SRERERRRSRSLSRSRLRS 173
SR R RS+S S E R S S +ER RR S+ERERR+SRS S R S
Sbjct: 536 SRSPNKERDRSQSRSPSEEREH-RQSRSPSKERDRRRWRSPSKERERRQSRSSSEERDHS 594
Query: 174 LRSRSRSR 181
RSRS ++
Sbjct: 595 -RSRSPNK 601
Score = 40.8 bits (94), Expect = 0.001
Identities = 52/175 (29%), Positives = 68/175 (38%), Gaps = 17/175 (9%)
Query: 33 RSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGAS 92
R R S+ R +SRS + R R R S+ R R S P+ S PS
Sbjct: 498 RRSRSPSKERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREH 557
Query: 93 PASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERL 152
S RS S RR RS + R +SRS S R R RS +
Sbjct: 558 RQS----------RSPSKERDRRRWRSPSKERERRQSRSSSEERDHSRSRSPNKQSGYSR 607
Query: 153 RRSRERERRRSRSLSRSRLRSLRSRSRSRSRSLCGSGEGPGLDEVGR-PVWLGSP 206
R+ +E+ SRS + S+ S+SR+ S+ P V R P W SP
Sbjct: 608 PRASSKEKAHSRSRTPSK-EGNHSQSRTSSKE-----SDPSQSTVPRSPDWKRSP 656
Score = 36.6 bits (83), Expect = 0.019
Identities = 42/124 (33%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Query: 29 RSLPRSP---RLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGG 85
RS RSP R +SRS S+ R RRR RS R R +SRS S P+ G
Sbjct: 545 RSQSRSPSEEREHRQSRSPSKERDRRRWRSPSKERERRQSRSSSEERDHSRSRSPNKQSG 604
Query: 86 PSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSL 145
S AS + + S P + + S+SR + + RS RS R SSL
Sbjct: 605 YSRPRASSKEKAHSRSRTPSKEGN-HSQSRTSSKESDPSQSTVPRSPDWKRSPTR-TSSL 662
Query: 146 SRLR 149
S+ R
Sbjct: 663 SQNR 666
Score = 34.7 bits (78), Expect = 0.071
Identities = 53/211 (25%), Positives = 77/211 (36%), Gaps = 27/211 (12%)
Query: 20 PPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSG 79
P S+ S R+P SRSR RS++R SR R S++
Sbjct: 59 PSSSKSTKSTSTKRAPSNRPSSRSRVRSKARTPSRVSTDTRTSKASKASDVRC------- 111
Query: 80 PSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLE 139
G S G +P GS S P +S R R +R + R R+ +
Sbjct: 112 -HQRRGTHSRGRTPGRRGSRSSKRSPSRASTPGRIRTHGARPGMASRVRTPT-------S 163
Query: 140 RLRSSLSRLRERLRRS-RERERRRSRSLSRSRLRSLRSRSRSRSRSLCGSGEGPGLDEVG 198
+ + S + R R S RER + R+LS+ R RS L + P +
Sbjct: 164 QQKGSRGKSYGRPRTSNRERSDSQPRNLSKKSYRPPGGSGIGRSSELAVT---PSTAKCQ 220
Query: 199 RPVWLGSPR--DRPPPQDT------GRPILP 221
P + S D P P + G+ I+P
Sbjct: 221 TPTGIPSKEKSDNPSPSSSRKVKSYGQMIIP 251
Score = 32.7 bits (73), Expect = 0.27
Identities = 50/187 (26%), Positives = 67/187 (35%), Gaps = 40/187 (21%)
Query: 71 SSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRS----------------------- 107
SS PS PS P++ PAS S S P RS
Sbjct: 7 SSKPSMSLAPSGSSMPTADPKPPASLKSTKSATPNRSLVPTKPATSRNSVMSPSSSKSTK 66
Query: 108 --SSLRSRSRR--ARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERL---RRSRERER 160
S+ R+ S R +RSR+R R SR + R+ + ++S R +R R R R
Sbjct: 67 STSTKRAPSNRPSSRSRVRSKARTPSRVSTDTRTSKASKASDVRCHQRRGTHSRGRTPGR 126
Query: 161 RRSRSLSRS----------RLRSLRSRSRSRSRSLCGSGEGPGLDEVGRPVWLGSPRDRP 210
R SRS RS R R SR R+ +G GRP R
Sbjct: 127 RGSRSSKRSPSRASTPGRIRTHGARPGMASRVRTPTSQQKGSRGKSYGRPRTSNRERSDS 186
Query: 211 PPQDTGR 217
P++ +
Sbjct: 187 QPRNLSK 193
Score = 30.4 bits (67), Expect = 1.3
Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 3/141 (2%)
Query: 81 SSPGGPSSGGASPASEGSAMS--PPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSL 138
SSP S S A GS+M P P +S ++S L + SR+ + S
Sbjct: 2 SSPKRSSKPSMSLAPSGSSMPTADPKPPASLKSTKSATPNRSLVPTKPATSRNSVMSPSS 61
Query: 139 ERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRSLCGSGEGPGLDEVG 198
+ S S R R R R RS++ + SR+ + S++ S + G G
Sbjct: 62 SKSTKSTSTKRAPSNRPSSRSRVRSKARTPSRVSTDTRTSKASKASDVRCHQRRGTHSRG 121
Query: 199 R-PVWLGSPRDRPPPQDTGRP 218
R P GS + P P
Sbjct: 122 RTPGRRGSRSSKRSPSRASTP 142
Score = 29.6 bits (65), Expect = 2.3
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 22 PRASSLPRSLPRSPRLCSRSRSRSRSRSRRRS---------RSLRWLRRRSRSRSRPFSS 72
PRASS ++ RS R S+ + S+SR+ + RS W R +R+ S +
Sbjct: 608 PRASSKEKAHSRS-RTPSKEGNHSQSRTSSKESDPSQSTVPRSPDWKRSPTRTSSLSQNR 666
Query: 73 GPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRL 121
PS S SP SGG + + + S +++ RS + S+L
Sbjct: 667 TPSKTSS-HSPSTFPSGGQTLSQDDSQADATTSKATLPGERSSSSSSKL 714
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 67.0 bits (162), Expect = 1e-11
Identities = 69/167 (41%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 32 PRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGA 91
PR+ S S SRSRSRSRRRSRS RR SRSRSR S S S S
Sbjct: 183 PRTSHRRSYSGSRSRSRSRRRSRSRS--RRSSRSRSRSISKSRSRSRSRSKGRSRSRSKG 240
Query: 92 SPASEGSAMSPPPPRSSSLRSRSR--------RARSRLRLLR-------RFRSRSLSLLR 136
+ S P R S SRSR R+RSR R + + +SRS S R
Sbjct: 241 RKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRSRSQSR 300
Query: 137 SLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSR 183
S L S+ R S +R SRS SRSR +S RSRSRS SR
Sbjct: 301 SNSPLPVPPSKARS---VSPPPKRATSRSRSRSRSKS-RSRSRSSSR 343
Score = 54.3 bits (129), Expect = 9e-08
Identities = 44/94 (46%), Positives = 52/94 (55%), Gaps = 8/94 (8%)
Query: 108 SSLRSRSRR-ARSRLRLLRRFRSRSLSLLRSLERLRSS-LSRLRERLRRSRERER----- 160
S RSRSRR +RSR R R RSRS+S RS R RS SR R + R+SR + +
Sbjct: 194 SRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRSKSKSKPKS 253
Query: 161 -RRSRSLSRSRLRSLRSRSRSRSRSLCGSGEGPG 193
R S S SRSR + +SRSRSRS G G
Sbjct: 254 DRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKG 287
Score = 48.5 bits (114), Expect = 5e-06
Identities = 39/84 (46%), Positives = 49/84 (58%), Gaps = 9/84 (10%)
Query: 105 PRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSR 164
PR+S RS S +RSR R RR RSRS RS R S+S+ RSR R R + R
Sbjct: 183 PRTSHRRSYSG-SRSRSRSRRRSRSRSRRSSRSRSR---SISK-----SRSRSRSRSKGR 233
Query: 165 SLSRSRLRSLRSRSRSRSRSLCGS 188
S SRS+ R RS+S+S+ +S GS
Sbjct: 234 SRSRSKGRKSRSKSKSKPKSDRGS 257
Score = 45.4 bits (106), Expect = 4e-05
Identities = 43/124 (34%), Positives = 57/124 (45%), Gaps = 22/124 (17%)
Query: 10 RPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRP 69
R S S P S S RS +SRSRSRSRS + + ++ +SRSRS+
Sbjct: 241 RKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKEN-GKGDIKSKSRSRSQS 299
Query: 70 FSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRS 129
S+ P P S+ ++SPPP R++S R+RSR R R RS
Sbjct: 300 RSNSPL---------------PVPPSKARSVSPPPKRATS------RSRSRSRSKSRSRS 338
Query: 130 RSLS 133
RS S
Sbjct: 339 RSSS 342
Score = 41.2 bits (95), Expect = 8e-04
Identities = 27/49 (55%), Positives = 31/49 (63%), Gaps = 5/49 (10%)
Query: 7 SLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRS 55
S R +SPL P PP +A S+ P R SRSRSRSRS+SR RSRS
Sbjct: 297 SQSRSNSPL--PVPPSKARSVS---PPPKRATSRSRSRSRSKSRSRSRS 340
Score = 39.7 bits (91), Expect = 0.002
Identities = 30/57 (52%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 130 RSLSLLRSLERL--RSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRS 184
R++ L+ R R S S R R RSR R R RSR SRSR RS+ S+SRSRSRS
Sbjct: 174 RNIRLIEDKPRTSHRRSYSGSRSR-SRSRRRSRSRSRRSSRSRSRSI-SKSRSRSRS 228
Score = 33.1 bits (74), Expect = 0.21
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 130 RSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRS 184
R+L L E ++ + ++ R S R SRS SRSR RS RSRSR SRS
Sbjct: 161 RALDKLDGTEINGRNIRLIEDKPRTSHRRSYSGSRSRSRSRRRS-RSRSRRSSRS 214
>gi|50083281 KIAA1853 protein [Homo sapiens]
Length = 611
Score = 65.1 bits (157), Expect = 5e-11
Identities = 67/184 (36%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 2 YMSRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSR-SRSRSRSRSRRRSRSLRWLR 60
Y S+ P S S P S S R P+ + S+ R R R+RRR RS +R
Sbjct: 435 YSSKSGKRSPPSRSSRSRRSPSYSRYSPSRERDPKYSEKDSQQRERERARRRRRSYSPMR 494
Query: 61 RRSRS-----RSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSR 115
+R R +R +S P P SSG S S + SSS RS SR
Sbjct: 495 KRRRDSPSHLEARRITSARKRPIPYYRPSPSSSGSLSSTSSWYS-------SSSSRSASR 547
Query: 116 ---RARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLR 172
R+RSR R RR R+R+ S SS SR RSR R R RSRS SRS+ R
Sbjct: 548 SYSRSRSRSRSRRRSRTRTSS---------SSSSRSPSPGSRSRSRSRSRSRSRSRSQSR 598
Query: 173 SLRS 176
S S
Sbjct: 599 SYSS 602
Score = 48.1 bits (113), Expect = 6e-06
Identities = 65/203 (32%), Positives = 84/203 (41%), Gaps = 42/203 (20%)
Query: 23 RASSLPRSLPRSP-RLCSRSRSRSRSRSRRRSR-------SLRWLRRRSRS-RSRPFSSG 73
++S +P + SP + CSRS S + +RS S S R+ + RS S R +S
Sbjct: 373 KSSLVPSTARSSPMKGCSRSSSYASTRSSSHSSRSPNPRASPRYTQSRSTSSEKRSYSRS 432
Query: 74 PSGPSGPSSPGGPSSGGASPASEG-SAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSL 132
PS S PS S S S SP R + + R R R RR RS
Sbjct: 433 PSYSSKSGKRSPPSRSSRSRRSPSYSRYSPSRERDPKYSEKDSQQRERERARRR--RRSY 490
Query: 133 SLLRSLERLRSSLSRLR-ERLRRSRER--------------------------ERRRSRS 165
S +R +R R S S L R+ +R+R R SRS
Sbjct: 491 SPMR--KRRRDSPSHLEARRITSARKRPIPYYRPSPSSSGSLSSTSSWYSSSSSRSASRS 548
Query: 166 LSRSRLRSLRSRSRSRSRSLCGS 188
SRSR RS RSR RSR+R+ S
Sbjct: 549 YSRSRSRS-RSRRRSRTRTSSSS 570
Score = 40.8 bits (94), Expect = 0.001
Identities = 47/129 (36%), Positives = 54/129 (41%), Gaps = 34/129 (26%)
Query: 14 PLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSG 73
P+ + P P +S SL + S S SRS SRS RSRS R RSR RSR +S
Sbjct: 516 PIPYYRPSPSSSG---SLSSTSSWYSSSSSRSASRSYSRSRS----RSRSRRRSRTRTSS 568
Query: 74 PSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLS 133
S P SPG RSRS R+RSR R R +SRS S
Sbjct: 569 SSSSRSP-SPGS-------------------------RSRS-RSRSRSRSRSRSQSRSYS 601
Query: 134 LLRSLERLR 142
S R
Sbjct: 602 SADSYSSTR 610
Score = 34.3 bits (77), Expect = 0.092
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 94 ASEGSAMSPPPP------RSSSLRSRSRRARSR----LRLLRRFRSRSLSLLRSLERLRS 143
AS ++PPP + S R + RR+ S ++ ++ S+ RS + R
Sbjct: 94 ASHDKDLTPPPSSRGKKKKKKSTRKKRRRSSSYSPSPVKKKKKKSSKKHKRRRSFSKKRR 153
Query: 144 SLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRS 184
S + RR +R +++SRS R R R SRS+S
Sbjct: 154 HSSSSPKSKRRDEKRHKKQSRSRPRKSHRHRHHRCPSRSQS 194
Score = 31.6 bits (70), Expect = 0.60
Identities = 66/250 (26%), Positives = 84/250 (33%), Gaps = 89/250 (35%)
Query: 39 SRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSG------------------- 79
S S +RSR + + L S+SR +SG + SG
Sbjct: 296 STQTSSARSRGQEKGSPSGGL-----SKSRELNSGNTSDSGNSFTTSSPQNKGAMLENLS 350
Query: 80 PSSPGGPSSGGASP-----------------------------------ASEGSAMSPPP 104
P+S G S G SP +S S+ SP P
Sbjct: 351 PTSRGRESRGFQSPCLECAEVKKSSLVPSTARSSPMKGCSRSSSYASTRSSSHSSRSPNP 410
Query: 105 ---PRSSSLRSRSRRARSRLRL--------LRRFRSRSLSLLRSLERLRSSLSRLR---- 149
PR + RS S RS R R SRS RS R S SR R
Sbjct: 411 RASPRYTQSRSTSSEKRSYSRSPSYSSKSGKRSPPSRSSRSRRSPSYSRYSPSRERDPKY 470
Query: 150 ---ERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRSLCGSGEGPGLDEVGRPVWLGSP 206
+ +R RER RRR RS S R R S S +R + + + RP+ P
Sbjct: 471 SEKDSQQRERERARRRRRSYSPMRKRRRDSPSHLEARRITSARK--------RPI----P 518
Query: 207 RDRPPPQDTG 216
RP P +G
Sbjct: 519 YYRPSPSSSG 528
Score = 29.3 bits (64), Expect = 3.0
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 24 ASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSP 83
+SS P+S R + + +SRSR R R R R R S SRP SS S G S
Sbjct: 155 SSSSPKSKRRDEKR-HKKQSRSRPRKSHRHRHHRCPSRSQSSESRP-SSCESRHRGRSPE 212
Query: 84 GGPSSGGASPASEGSAMSPPPPRSSSLRSRSR 115
G S + P + S R S+
Sbjct: 213 EGQKSRRRHSRRCSKTLCKDSPEAQSSRPPSQ 244
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 64.7 bits (156), Expect = 6e-11
Identities = 54/155 (34%), Positives = 75/155 (48%), Gaps = 8/155 (5%)
Query: 35 PRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPA 94
P S++++RSRSR R R+++ + R RS S S SS S SG SS G SS +S +
Sbjct: 550 PESKSKTKTRSRSRGRARNKTSK-SRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSS 608
Query: 95 SEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRR 154
S S SSS S S +RSR R R +R RS++R R S L +
Sbjct: 609 SSSSTSGSSSRDSSSSTSSSSESRSRSR--GRGHNRDRKHRRSVDRKRRDTSGLERSHKS 666
Query: 155 S-----RERERRRSRSLSRSRLRSLRSRSRSRSRS 184
S R+ + + ++ R RS+ SRS RS
Sbjct: 667 SKGGSSRDTKGSKDKNSRSDRKRSISESSRSGKRS 701
Score = 53.9 bits (128), Expect = 1e-07
Identities = 60/182 (32%), Positives = 76/182 (41%), Gaps = 18/182 (9%)
Query: 5 RLSLPRPSSPLSWPPPPPRASSLPRSLPRSP-RLCSRSRSR---SRSRSRRRSRSLRWLR 60
R P S L+ P P + P S ++ R SR R+R S+SRSR
Sbjct: 527 RKDFPVESVKLTEVPVEPVLTVHPESKSKTKTRSRSRGRARNKTSKSRSR---------- 576
Query: 61 RRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSR 120
S S S SS S SG SS G SS +S +S S SSS S S +RSR
Sbjct: 577 --SSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSR 634
Query: 121 LRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRS 180
R R +R RS++R R S L + S+ R ++ RS R RS S
Sbjct: 635 SR--GRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSIS 692
Query: 181 RS 182
S
Sbjct: 693 ES 694
Score = 35.4 bits (80), Expect = 0.042
Identities = 34/96 (35%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 24 ASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSP 83
+ S R S S SRSRSR R R R RRS R R +SG S SS
Sbjct: 614 SGSSSRDSSSSTSSSSESRSRSRGRGHNRDRK----HRRSVDRKRRDTSGLE-RSHKSSK 668
Query: 84 GGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARS 119
GG S + S S S RS R +RS
Sbjct: 669 GGSSRDTKGSKDKNSRSDRKRSISESSRSGKRSSRS 704
Score = 29.3 bits (64), Expect = 3.0
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 155 SRERERRRSRSLSRSRLRSLRSRSRSRSRSLCGS 188
S+ + + RSRS R+R ++ +SRSRS S S S
Sbjct: 552 SKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSS 585
Score = 29.3 bits (64), Expect = 3.0
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 158 RERRRSRSLSRSRLRSLRSRSRSRSRSLCGSGEGPGLDEVGRPVWLGSPRDR 209
+ + ++RS SR R R+ S+SRSRS S S G GS R
Sbjct: 553 KSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSR 604
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 64.7 bits (156), Expect = 6e-11
Identities = 52/137 (37%), Positives = 70/137 (51%), Gaps = 15/137 (10%)
Query: 61 RRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSR 120
++ RSRS SSG S + +S S+ +S S S S RSSS + + R +RSR
Sbjct: 504 KQGRSRSGSSSSGSSSSNSRTSSTS-STVSSSSYSSSSGSSRTSSRSSSPKRKKRHSRSR 562
Query: 121 LRLLRRFRSRSLSLLRSL------------ERLRSSLSRLRERLRRSRE--RERRRSRSL 166
++ RSRS S R + +R RS+ + + RR+R RERRRSRS
Sbjct: 563 SPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNRSPSRERRRSRSR 622
Query: 167 SRSRLRSLRSRSRSRSR 183
SR R + SRSRSR R
Sbjct: 623 SRDRRTNRASRSRSRDR 639
Score = 43.1 bits (100), Expect = 2e-04
Identities = 50/169 (29%), Positives = 69/169 (40%), Gaps = 14/169 (8%)
Query: 40 RSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSG-------PSSPGGPSSGGAS 92
RS S R RRR+RS RRRSRSRSR + + S G S
Sbjct: 596 RSNRNSIERERRRNRSPSRERRRSRSRSRDRRTNRASRSRSRDRRKIDDQRGNLSGNSHK 655
Query: 93 PASEGSAMSPPPPRSSSL-RSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRER 151
E RS S+ + R ++ + R R + + + + E S +R
Sbjct: 656 HKGEAKEQERKKERSRSIDKDRKKKDKEREREQDKRKEK-----QKREEKDFKFSSQDDR 710
Query: 152 LRRSRERERRRSRSLSRS-RLRSLRSRSRSRSRSLCGSGEGPGLDEVGR 199
L+R RE ER SRS S S ++ SR S+ + S + G D GR
Sbjct: 711 LKRKRESERTFSRSGSISVKIIRHDSRQDSKKSTTKDSKKHSGSDSSGR 759
Score = 35.0 bits (79), Expect = 0.054
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 40 RSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSA 99
R R R+ SR S S++ +R SR S+ ++ S G SSG +S S GS+
Sbjct: 713 RKRESERTFSRSGSISVKIIRHDSRQDSKKSTTKDS----KKHSGSDSSGRSSSESPGSS 768
Query: 100 --MSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLS 133
P+ S RS + RS + R+ +S+S S
Sbjct: 769 KEKKAKKPKHSRSRSVEKSQRSGKKASRKHKSKSRS 804
Score = 30.4 bits (67), Expect = 1.3
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 85 GPSSGGASPA--SEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLR 142
GP GG P G P PP++ R S R R R + + + + R
Sbjct: 173 GPPQGGFHPPYWQPGPPGPPAPPQNRRERPSSFRDRQRSPIALPVKQEPPQI--DAVKRR 230
Query: 143 SSLSRLRERLRRSRERERRRSRSLSRSRL---RSLRSRSRSRSRSLCGSGEGPGLDE 196
+ + +RE L + ER + + L + R+ RS S+ ++ G+GP L +
Sbjct: 231 TLPAWIREGLEK---MEREKQKKLEKERMEQQRSQLSKKEKKATEDAEGGDGPRLPQ 284
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 64.7 bits (156), Expect = 6e-11
Identities = 52/137 (37%), Positives = 70/137 (51%), Gaps = 15/137 (10%)
Query: 61 RRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSR 120
++ RSRS SSG S + +S S+ +S S S S RSSS + + R +RSR
Sbjct: 504 KQGRSRSGSSSSGSSSSNSRTSSTS-STVSSSSYSSSSGSSRTSSRSSSPKRKKRHSRSR 562
Query: 121 LRLLRRFRSRSLSLLRSL------------ERLRSSLSRLRERLRRSRE--RERRRSRSL 166
++ RSRS S R + +R RS+ + + RR+R RERRRSRS
Sbjct: 563 SPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNRSPSRERRRSRSR 622
Query: 167 SRSRLRSLRSRSRSRSR 183
SR R + SRSRSR R
Sbjct: 623 SRDRRTNRASRSRSRDR 639
Score = 43.1 bits (100), Expect = 2e-04
Identities = 50/169 (29%), Positives = 69/169 (40%), Gaps = 14/169 (8%)
Query: 40 RSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSG-------PSSPGGPSSGGAS 92
RS S R RRR+RS RRRSRSRSR + + S G S
Sbjct: 596 RSNRNSIERERRRNRSPSRERRRSRSRSRDRRTNRASRSRSRDRRKIDDQRGNLSGNSHK 655
Query: 93 PASEGSAMSPPPPRSSSL-RSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRER 151
E RS S+ + R ++ + R R + + + + E S +R
Sbjct: 656 HKGEAKEQERKKERSRSIDKDRKKKDKEREREQDKRKEK-----QKREEKDFKFSSQDDR 710
Query: 152 LRRSRERERRRSRSLSRS-RLRSLRSRSRSRSRSLCGSGEGPGLDEVGR 199
L+R RE ER SRS S S ++ SR S+ + S + G D GR
Sbjct: 711 LKRKRESERTFSRSGSISVKIIRHDSRQDSKKSTTKDSKKHSGSDSSGR 759
Score = 35.0 bits (79), Expect = 0.054
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 40 RSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSA 99
R R R+ SR S S++ +R SR S+ ++ S G SSG +S S GS+
Sbjct: 713 RKRESERTFSRSGSISVKIIRHDSRQDSKKSTTKDS----KKHSGSDSSGRSSSESPGSS 768
Query: 100 --MSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLS 133
P+ S RS + RS + R+ +S+S S
Sbjct: 769 KEKKAKKPKHSRSRSVEKSQRSGKKASRKHKSKSRS 804
Score = 30.4 bits (67), Expect = 1.3
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 85 GPSSGGASPA--SEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLR 142
GP GG P G P PP++ R S R R R + + + + R
Sbjct: 173 GPPQGGFHPPYWQPGPPGPPAPPQNRRERPSSFRDRQRSPIALPVKQEPPQI--DAVKRR 230
Query: 143 SSLSRLRERLRRSRERERRRSRSLSRSRL---RSLRSRSRSRSRSLCGSGEGPGLDE 196
+ + +RE L + ER + + L + R+ RS S+ ++ G+GP L +
Sbjct: 231 TLPAWIREGLEK---MEREKQKKLEKERMEQQRSQLSKKEKKATEDAEGGDGPRLPQ 284
>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
sapiens]
Length = 1031
Score = 63.2 bits (152), Expect = 2e-10
Identities = 51/104 (49%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 91 ASPASEGS-AMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLR 149
AS GS + S P S R RR+RSR R RR RSRS R S SR R
Sbjct: 13 ASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDK-------RRSRSRDR 65
Query: 150 ERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRSLCGSGEGPG 193
+RLRRSR RER RSR RSR R R RSRSRSR PG
Sbjct: 66 KRLRRSRSRERDRSRERRRSRSRD-RRRSRSRSRGRRSRSSSPG 108
Score = 52.0 bits (123), Expect = 4e-07
Identities = 40/75 (53%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 111 RSRSRRARSRLRLLRRFRSRSLSLLRSLERL-RSSLSRLRERLR-RSRERERRRSRSLSR 168
R +R+ SR R R RSRS S RS R S SR R+R R RSR R++RRSRS R
Sbjct: 6 RHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRSRSRDR 65
Query: 169 SRLRSLRSRSRSRSR 183
RLR RSR R RSR
Sbjct: 66 KRLRRSRSRERDRSR 80
Score = 49.7 bits (117), Expect = 2e-06
Identities = 63/158 (39%), Positives = 70/158 (44%), Gaps = 43/158 (27%)
Query: 36 RLCSRSRSRSRSRSRRRS--RSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASP 93
R SR RS SRSRSR S RS R RRSRSR R
Sbjct: 11 RSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRR--------------------- 49
Query: 94 ASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLR 153
RS S R R+R R RL RR RSR RS ER RS R R+R R
Sbjct: 50 -----------ERSRSRDKRRSRSRDRKRL-RRSRSRERD--RSRERRRS---RSRDRRR 92
Query: 154 -RSRERERRRSRSLSRSRLRSLRSRSRSRSRSLCGSGE 190
RSR R RRSRS S +S ++ +RSRS+ GE
Sbjct: 93 SRSRSR-GRRSRSSSPGN-KSKKTENRSRSKEKTDGGE 128
Score = 44.7 bits (104), Expect = 7e-05
Identities = 29/59 (49%), Positives = 31/59 (52%)
Query: 23 RASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPS 81
R+ RS R + RSRSR R RSR R RS RRRSRSRSR S S P S
Sbjct: 53 RSRDKRRSRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKS 111
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 62.4 bits (150), Expect = 3e-10
Identities = 68/169 (40%), Positives = 76/169 (44%), Gaps = 21/169 (12%)
Query: 20 PPPRASSLPRSLPRSPRLCSRS--RSRSRSRSRRRSRSLRWLRRRSRS--RSRPFSSGPS 75
P R+ S R RS +R R+RSR+ SRR RRRSRS R R FS PS
Sbjct: 1895 PKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPS 1954
Query: 76 GPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLL 135
S PS +P S S P R S SR R SR R RS S++
Sbjct: 1955 RRSRT-----PSRRSRTP----SRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVV 2005
Query: 136 RSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRS 184
R R S S RLRRSR RRR SRS +R RSRS R RS
Sbjct: 2006 R-----RRSFSISPVRLRRSRTPLRRR---FSRSPIRRKRSRSSERGRS 2046
Score = 57.8 bits (138), Expect = 8e-09
Identities = 64/166 (38%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 23 RASSLPRSLPRSPRLCSRSRSR---SRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSG 79
R SSL RS +SR R SRSR+R+RS + R ++RSRSR S
Sbjct: 1818 RDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSR------SRRRR 1871
Query: 80 PSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSR-LRLLRRFRSRSLSLLRSL 138
SS S G S+ P RS S + +R+ SR R R RSR+ S
Sbjct: 1872 RSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPS----- 1926
Query: 139 ERLRSSLSRLRERLRRSRERERRRSRSLS---RSRLRSLRSRSRSR 181
R S S R RRSR RRRS S+S RSR S RSR+ SR
Sbjct: 1927 ---RRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSR 1969
Score = 52.0 bits (123), Expect = 4e-07
Identities = 48/139 (34%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 48 RSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRS 107
+++ R + + +R S RSR S SS S + S RS
Sbjct: 1805 KNKNRDKGEKEKKRDSSLRSR-------------SKRSKSSEHKSRKRTSESRSRARKRS 1851
Query: 108 SSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLS---RLRERLRRSRERERRRSR 164
S +S + RSR R RR RS S RS R R S+S R R RS+ RER+R R
Sbjct: 1852 SKSKSHRSQTRSRSRSRRRRRS---SRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKR 1908
Query: 165 SLSRSRLRSLRSRSRSRSR 183
S SR +++R+RSR+ SR
Sbjct: 1909 SSSRDNRKTVRARSRTPSR 1927
Score = 47.4 bits (111), Expect = 1e-05
Identities = 41/99 (41%), Positives = 48/99 (48%), Gaps = 21/99 (21%)
Query: 106 RSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRS 165
R SSLRSRS+R++S R+ S S RS R RSS S+ RSR R RRR RS
Sbjct: 1818 RDSSLRSRSKRSKSSEHKSRKRTSES----RSRARKRSSKSKSHRSQTRSRSRSRRRRRS 1873
Query: 166 LSRSRLRSL----------------RSRSRSRSRSLCGS 188
SRSR +S RS+SR R R S
Sbjct: 1874 -SRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSS 1911
Score = 39.7 bits (91), Expect = 0.002
Identities = 60/229 (26%), Positives = 90/229 (39%), Gaps = 28/229 (12%)
Query: 3 MSRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRR 62
++ L P+ SS PPP +LP S + + +R L +
Sbjct: 1692 LAALLSPKESSGGEKEVPPPPKETLPDS-----------GFSANIEDINEADLVRPLLPK 1740
Query: 63 SRSRSRPFSSGPSGPSGPSSPGGPSSGGASP--------ASEGSAMSPPP----PRSSSL 110
R +G GP S G S ASP ASE S+ +
Sbjct: 1741 DMERLTSLRAGIEGPLLASDVGRDRSA-ASPVVSSMPERASESSSEEKDDYEIFVKVKDT 1799
Query: 111 RSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLS--R 168
+S++ ++R + + + R SL +R +SS + R+R SR R R+RS R
Sbjct: 1800 HEKSKKNKNRDKGEKE-KKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHR 1858
Query: 169 SRLRSLRSRSRSRSRSLCGSGEGPGLDEVGRPVWLGSPRDRPPPQDTGR 217
S+ RS RSRSR R RS + G V + SP+ R ++ R
Sbjct: 1859 SQTRS-RSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKR 1906
Score = 32.7 bits (73), Expect = 0.27
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 13 SPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRS--RSRPF 70
SP P R S P R+P SR+ SR RRSR+ RRRSRS R R F
Sbjct: 1952 SPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPS-RRRRSRSVVRRRSF 2010
Query: 71 SSGP 74
S P
Sbjct: 2011 SISP 2014
Score = 32.7 bits (73), Expect = 0.27
Identities = 31/76 (40%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 4 SRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRS---RSRSRSRSRRRSRSLRWLR 60
SR R +P P R S P R+P SR+ R RSRS RRRS S+ +R
Sbjct: 1957 SRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVR 2016
Query: 61 -RRSRS-RSRPFSSGP 74
RRSR+ R FS P
Sbjct: 2017 LRRSRTPLRRRFSRSP 2032
Score = 30.4 bits (67), Expect = 1.3
Identities = 22/58 (37%), Positives = 26/58 (44%)
Query: 10 RPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRS 67
R +P P R S P R+P SR+ SR RR RS +RRRS S S
Sbjct: 1956 RSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSIS 2013
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 62.4 bits (150), Expect = 3e-10
Identities = 68/169 (40%), Positives = 76/169 (44%), Gaps = 21/169 (12%)
Query: 20 PPPRASSLPRSLPRSPRLCSRS--RSRSRSRSRRRSRSLRWLRRRSRS--RSRPFSSGPS 75
P R+ S R RS +R R+RSR+ SRR RRRSRS R R FS PS
Sbjct: 1895 PKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPS 1954
Query: 76 GPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLL 135
S PS +P S S P R S SR R SR R RS S++
Sbjct: 1955 RRSRT-----PSRRSRTP----SRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVV 2005
Query: 136 RSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRS 184
R R S S RLRRSR RRR SRS +R RSRS R RS
Sbjct: 2006 R-----RRSFSISPVRLRRSRTPLRRR---FSRSPIRRKRSRSSERGRS 2046
Score = 57.8 bits (138), Expect = 8e-09
Identities = 64/166 (38%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 23 RASSLPRSLPRSPRLCSRSRSR---SRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSG 79
R SSL RS +SR R SRSR+R+RS + R ++RSRSR S
Sbjct: 1818 RDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSR------SRRRR 1871
Query: 80 PSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSR-LRLLRRFRSRSLSLLRSL 138
SS S G S+ P RS S + +R+ SR R R RSR+ S
Sbjct: 1872 RSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPS----- 1926
Query: 139 ERLRSSLSRLRERLRRSRERERRRSRSLS---RSRLRSLRSRSRSR 181
R S S R RRSR RRRS S+S RSR S RSR+ SR
Sbjct: 1927 ---RRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSR 1969
Score = 52.0 bits (123), Expect = 4e-07
Identities = 48/139 (34%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 48 RSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRS 107
+++ R + + +R S RSR S SS S + S RS
Sbjct: 1805 KNKNRDKGEKEKKRDSSLRSR-------------SKRSKSSEHKSRKRTSESRSRARKRS 1851
Query: 108 SSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLS---RLRERLRRSRERERRRSR 164
S +S + RSR R RR RS S RS R R S+S R R RS+ RER+R R
Sbjct: 1852 SKSKSHRSQTRSRSRSRRRRRS---SRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKR 1908
Query: 165 SLSRSRLRSLRSRSRSRSR 183
S SR +++R+RSR+ SR
Sbjct: 1909 SSSRDNRKTVRARSRTPSR 1927
Score = 47.4 bits (111), Expect = 1e-05
Identities = 41/99 (41%), Positives = 48/99 (48%), Gaps = 21/99 (21%)
Query: 106 RSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRS 165
R SSLRSRS+R++S R+ S S RS R RSS S+ RSR R RRR RS
Sbjct: 1818 RDSSLRSRSKRSKSSEHKSRKRTSES----RSRARKRSSKSKSHRSQTRSRSRSRRRRRS 1873
Query: 166 LSRSRLRSL----------------RSRSRSRSRSLCGS 188
SRSR +S RS+SR R R S
Sbjct: 1874 -SRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSS 1911
Score = 39.7 bits (91), Expect = 0.002
Identities = 60/229 (26%), Positives = 90/229 (39%), Gaps = 28/229 (12%)
Query: 3 MSRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRR 62
++ L P+ SS PPP +LP S + + +R L +
Sbjct: 1692 LAALLSPKESSGGEKEVPPPPKETLPDS-----------GFSANIEDINEADLVRPLLPK 1740
Query: 63 SRSRSRPFSSGPSGPSGPSSPGGPSSGGASP--------ASEGSAMSPPP----PRSSSL 110
R +G GP S G S ASP ASE S+ +
Sbjct: 1741 DMERLTSLRAGIEGPLLASDVGRDRSA-ASPVVSSMPERASESSSEEKDDYEIFVKVKDT 1799
Query: 111 RSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLS--R 168
+S++ ++R + + + R SL +R +SS + R+R SR R R+RS R
Sbjct: 1800 HEKSKKNKNRDKGEKE-KKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHR 1858
Query: 169 SRLRSLRSRSRSRSRSLCGSGEGPGLDEVGRPVWLGSPRDRPPPQDTGR 217
S+ RS RSRSR R RS + G V + SP+ R ++ R
Sbjct: 1859 SQTRS-RSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKR 1906
Score = 32.7 bits (73), Expect = 0.27
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 13 SPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRS--RSRPF 70
SP P R S P R+P SR+ SR RRSR+ RRRSRS R R F
Sbjct: 1952 SPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPS-RRRRSRSVVRRRSF 2010
Query: 71 SSGP 74
S P
Sbjct: 2011 SISP 2014
Score = 32.7 bits (73), Expect = 0.27
Identities = 31/76 (40%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 4 SRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRS---RSRSRSRSRRRSRSLRWLR 60
SR R +P P R S P R+P SR+ R RSRS RRRS S+ +R
Sbjct: 1957 SRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVR 2016
Query: 61 -RRSRS-RSRPFSSGP 74
RRSR+ R FS P
Sbjct: 2017 LRRSRTPLRRRFSRSP 2032
Score = 30.4 bits (67), Expect = 1.3
Identities = 22/58 (37%), Positives = 26/58 (44%)
Query: 10 RPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRS 67
R +P P R S P R+P SR+ SR RR RS +RRRS S S
Sbjct: 1956 RSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSIS 2013
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 60.5 bits (145), Expect = 1e-09
Identities = 59/164 (35%), Positives = 68/164 (41%), Gaps = 13/164 (7%)
Query: 6 LSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRS 65
L +P+P P P +S R SRSRS+SRSR+R RS S RRR RS
Sbjct: 245 LKVPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRS 304
Query: 66 RSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLL- 124
RSR +S PS PS +P PPPPR RS RR R L
Sbjct: 305 RSRSYSP----RRRPSPRRRPSPRRRTPPRR----MPPPPRHRRSRSPVRRRRRSSASLS 356
Query: 125 ----RRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSR 164
SRS S + + SS R RL S RRR R
Sbjct: 357 GSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHR 400
Score = 47.4 bits (111), Expect = 1e-05
Identities = 54/173 (31%), Positives = 68/173 (39%), Gaps = 29/173 (16%)
Query: 33 RSPRLCSRSRSRSRSRS---RRRSRSLRWLRRRSRSRSRPFSSGPSGPSG--------PS 81
R R SRS R +SRS RRRS +R R+RS SRS + PS P
Sbjct: 163 REKRERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPE 222
Query: 82 SPGGPSSGGASPASEGSAMSP----------PPPRSSSLRSRSRRARSRLRLLRRFRSRS 131
P E ++ S P P+ S S++ + + + R RSRS
Sbjct: 223 LPEPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRS 282
Query: 132 LSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRS 184
S R+ R S R R R R RSRS S R S R R R R+
Sbjct: 283 KSRSRTRSRSPSH--------TRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRT 327
Score = 45.4 bits (106), Expect = 4e-05
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 11/147 (7%)
Query: 9 PRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRS---RSRSRSRSRRRSRSLRWLRRR--- 62
P P + PPPPP+ + P P+ R S S + RS ++RRS SL R+
Sbjct: 608 PPPKRRTASPPPPPKRRASPSPPPK--RRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSS 665
Query: 63 -SRSRSRPFSSGPSGPSGPS-SPGGP-SSGGASPASEGSAMSPPPPRSSSLRSRSRRARS 119
SRS S P+ PS P P +S P G++ SP +S S +R R S
Sbjct: 666 PSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVS 725
Query: 120 RLRLLRRFRSRSLSLLRSLERLRSSLS 146
R ++ + + +S+ R+ SS S
Sbjct: 726 RTPEPKKIKKAASPSPQSVRRVSSSRS 752
Score = 43.9 bits (102), Expect = 1e-04
Identities = 50/187 (26%), Positives = 76/187 (40%), Gaps = 13/187 (6%)
Query: 20 PPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSG 79
P PR + PR +P PR RSRS R RRRS + S S SR S P
Sbjct: 321 PSPRRRTPPRRMPPPPR---HRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKR 377
Query: 80 PSSPGGPS---SGGASPASEGSAMSPP---PPR---SSSLRSRSRRARSRLRLLRRFRSR 130
SSP + S ASP SPP PP+ S + + +R +SR+ + S
Sbjct: 378 TSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSG 437
Query: 131 SLSLLRSLERLRS-SLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRSLCGSG 189
++ + E+ S S + ++ S E + + + ++ R R +S SG
Sbjct: 438 KVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAAADSVQQRRQYRRQNQQSSSDSG 497
Query: 190 EGPGLDE 196
++
Sbjct: 498 SSSSSED 504
Score = 42.7 bits (99), Expect = 3e-04
Identities = 54/182 (29%), Positives = 69/182 (37%), Gaps = 21/182 (11%)
Query: 40 RSRSRSRSRSRRRSRSLRWLRRRSRS-----RSRPFSSGPSGPSGPSSPGGPSSGGASPA 94
+ S R RSRS R RR+SRS RS P S S SPA
Sbjct: 156 KEEKESSREKRERSRSPR--RRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPA 213
Query: 95 SEGSAMSP--PPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERL 152
E +P P P + A S +L+ + + + ++S +
Sbjct: 214 PEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEK 273
Query: 153 RRSRERERRRSRSLSRSRLRS-LRSRSRSRSRSLCGSGEGPGLDEVGRPVWLGSPRDRPP 211
R R R R +SRS +RSR S R R R RSRS S P SPR RP
Sbjct: 274 TRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYS-----------PRRRPSPRRRPS 322
Query: 212 PQ 213
P+
Sbjct: 323 PR 324
Score = 42.4 bits (98), Expect = 3e-04
Identities = 60/191 (31%), Positives = 75/191 (39%), Gaps = 16/191 (8%)
Query: 18 PPPPPRASSLPRSLPRSPRLCSRSRSRSRSRS-----RRRSRSLRWLRRRSRSRSRPFSS 72
P P R+S + R RS R R++SRS S + ++ L + + S ++
Sbjct: 180 PSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEAT 239
Query: 73 GPSG------PSGPSSPGGPSSGGASPASEGSAMSPPPPRS-SSLRSRSR-RARSRLRLL 124
S P P PS S + + P RS S RSR+R R+ S R
Sbjct: 240 STSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPR 299
Query: 125 RRFRSRSLSL---LRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSR 181
RR RSRS S R R R S R R RRSRS R R RS S S S
Sbjct: 300 RRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSS 359
Query: 182 SRSLCGSGEGP 192
S S P
Sbjct: 360 SSSSSSRSRSP 370
Score = 41.6 bits (96), Expect = 6e-04
Identities = 64/237 (27%), Positives = 85/237 (35%), Gaps = 31/237 (13%)
Query: 10 RPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRP 69
R SP PPP R + P R+P R RS S RR S ++ S R
Sbjct: 557 RRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPS---PRRYSPPIQRRYSPSPPPKRR 613
Query: 70 FSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPP--PPRSSSLRSRSRRARSRLRLLRRF 127
+S P P +SP P S + S P RS SL S+ R+ S R R
Sbjct: 614 TASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREA 673
Query: 128 RS----------------RSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRL 171
RS ++ S + R SS + R+ S RR SR+ ++
Sbjct: 674 RSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKI 733
Query: 172 RSLRS------RSRSRSRSLCGSGEGPGLDEVGRPVWLGSPRDRPPPQDTGRPILPL 222
+ S R S SRS+ GS E P SP P P +P+
Sbjct: 734 KKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPP----SPVQSQSPSTNWSPAVPV 786
Score = 37.4 bits (85), Expect = 0.011
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 9 PRPSSPL--SWPPPPPRASSLPRSLPRSPRLCSRSRSR-SRSRSRRR-----SRSLRWLR 60
PRP +P S PPP R +S +SP +R R SR+ ++ S S + +R
Sbjct: 686 PRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVR 745
Query: 61 RRSRSRS-----RPFSSGPSGPSGPSSPGGPSSGGASPA-----SEGSAMSPPPPRSSSL 110
R S SRS P + P P P PS+ SPA ++ SP PPR+S
Sbjct: 746 RVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNW-SPAVPVKKAKSPTPSPSPPRNSDQ 804
Query: 111 RSRSRRARSR 120
++ + +
Sbjct: 805 EGGGKKKKKK 814
Score = 35.0 bits (79), Expect = 0.054
Identities = 48/177 (27%), Positives = 63/177 (35%), Gaps = 13/177 (7%)
Query: 8 LPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRS 67
LP PS + P S+ P + S ++ ++ + R RSRSRS
Sbjct: 223 LPEPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRS 282
Query: 68 R---------PFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRAR 118
+ P + P S SP S PPR R RR+R
Sbjct: 283 KSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSR 342
Query: 119 SRLRLLRRFRSRSL---SLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLR 172
S +R RR S SL S S R RS + +R + RR S S S R R
Sbjct: 343 SPVRRRRR-SSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRR 398
Score = 32.0 bits (71), Expect = 0.46
Identities = 61/228 (26%), Positives = 82/228 (35%), Gaps = 43/228 (18%)
Query: 22 PRASSLPRSLPRSPRLCSRSRSRSRS-RSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGP 80
P+ S + R S SRS S S R R++ S R RRRS PS P
Sbjct: 507 PKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRS-------------PSPP 553
Query: 81 SSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLR----LLRRF------RSR 130
+ S A P +PPP R + RR+ S R + RR+ + R
Sbjct: 554 PTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRR 613
Query: 131 SLSLLRSLERLRSSLSRLRERL-------RRSRERERRRSRSLSRSR---------LRSL 174
+ S +R S + R+ +RS +RRS SLS R
Sbjct: 614 TASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREA 673
Query: 175 RSRSRSRSRSLCGSGEGPGLDEVGRPVWLG---SPRDRPPPQDTGRPI 219
RS ++ S P PV G SP+ R P + RPI
Sbjct: 674 RSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPI 721
Score = 27.7 bits (60), Expect = 8.7
Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 39 SRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGS 98
S S S R ++ RRR S SR S P +SP G SP
Sbjct: 498 SSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRR 557
Query: 99 AMSP---PPPR 106
SP PPPR
Sbjct: 558 RRSPSPAPPPR 568
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 59.7 bits (143), Expect = 2e-09
Identities = 67/199 (33%), Positives = 80/199 (40%), Gaps = 28/199 (14%)
Query: 19 PPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRS----------LRWLRRRSRSRSR 68
P PP A S L ++ ++ R R R RS + + R RR R RS
Sbjct: 468 PAPPAADSRWGGLDLRRKILTQRRERYRQRSPSPAPAPAPAAAAGPPTRKKSRRERKRSG 527
Query: 69 PFSSGPSGPSGPS-SPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRF 127
S SG +P P+S S P SSS R RSR +RSR R RR
Sbjct: 528 EAKEAASSSSGTQPAPPAPASPWDSKKHRSRDRKPGSHASSSARRRSR-SRSRSRSTRR- 585
Query: 128 RSRSLSLLRSLERLRSSLSRLRERLRRS--------------RERERRRSRSLSRSRLRS 173
RSRS R R RS R R RRS RER R + R S+ +
Sbjct: 586 RSRSTDRRRGGSR-RSRSREKRRRRRRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKK 644
Query: 174 LRSRSRSRSRSLCGSGEGP 192
RSRSR RS GS + P
Sbjct: 645 KRSRSRGEKRSGDGSEKAP 663
Score = 45.4 bits (106), Expect = 4e-05
Identities = 47/127 (37%), Positives = 53/127 (41%), Gaps = 19/127 (14%)
Query: 10 RPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRP 69
R P S R S RS RS R SRS R R S RRSRS RRR RS S P
Sbjct: 558 RDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGS-RRSRSREKRRRRRRSASPP 616
Query: 70 FSSGPSGPS------GPSSPGGPS--------SGGASPASEGS----AMSPPPPRSSSLR 111
++ S S G GG S S G + +GS A +PPP S+S
Sbjct: 617 PATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRGEKRSGDGSEKAPAPAPPPSGSTSCG 676
Query: 112 SRSRRAR 118
R R R
Sbjct: 677 DRDSRRR 683
Score = 34.3 bits (77), Expect = 0.092
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 75 SGPSGPSSPGGPSSGGASPASEGSAMSPPPP 105
+G GP+ P PSS +SP+ S+ SP PP
Sbjct: 179 TGDGGPAPPPAPSSASSSPSPSPSSSSPSPP 209
Score = 31.6 bits (70), Expect = 0.60
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 61 RRSRSRSRPFSSGPSGPSGPSSPGGPSSGGA-SPASEGSAMSPPPP 105
R + +R +G GP+ P +P SS + SP+S + PPPP
Sbjct: 168 RPTCARHLTLGTGDGGPAPPPAPSSASSSPSPSPSSSSPSPPPPPP 213
Score = 30.4 bits (67), Expect = 1.3
Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 8/126 (6%)
Query: 33 RSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPG-GPSSGGA 91
RS S S SR + R+ R R R R R SS + P S+P GP
Sbjct: 753 RSGAASSSSSSREKGSRRKALDGGDRDRDRDRDRDRDRSSKKARPPKESAPSSGPPP--K 810
Query: 92 SPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRER 151
P S GS S SSS SR+ + + ++ R S + + + L + +
Sbjct: 811 PPVSSGSGSS-----SSSSSCSSRKVKLQSKVAVLIREGVSSTTPAKDAASAGLGSIGVK 865
Query: 152 LRRSRE 157
R RE
Sbjct: 866 FSRDRE 871
Score = 28.1 bits (61), Expect = 6.6
Identities = 58/251 (23%), Positives = 96/251 (38%), Gaps = 54/251 (21%)
Query: 11 PSSPLSWPP--PPPRASSLPRSLPRSPRLCSRS-----------RSRSRSRSRRRSRSLR 57
P+S +S P PPP +LP + C+ S + SR +++ L
Sbjct: 1074 PASRVSQLPTLPPPMPWNLPAGVD-----CTTSGVLALTALLFKMEEANLASRAKAQELI 1128
Query: 58 WLRRRSRSRSRPFSS-GPSGPSGPSS---PGGPSS---GGASPASEGSAMSPPPPRSSSL 110
+ S +P SS G + P+S P GPSS G+ P G +PP P +
Sbjct: 1129 QATNQILSHRKPPSSLGMTPAPVPTSLGLPPGPSSYLLPGSLPLG-GCGSTPPTPTGLAA 1187
Query: 111 RSRSRRARSRL-------RLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERER--- 160
S R S + L++ ++ R++E ++ ++ ++ ++E +
Sbjct: 1188 TSDKREGSSSSEGRGDTDKYLKKLHTQE----RAVEEVKLAIKPYYQKKDITKEEYKDIL 1243
Query: 161 ---------RRSRSLSRSRLRSLRSRSRSRSRSLCGSGEGPGLDEVGRPVWLGSPRDRPP 211
+S ++ ++ +L R R G PG D G P P P
Sbjct: 1244 RKAVHKICHSKSGEINPVKVSNLVRAYVQRYRYFRKHGRKPG-DPPGPP----RPPKEPG 1298
Query: 212 PQDTGRPILPL 222
P D G P LPL
Sbjct: 1299 PPDKGGPGLPL 1309
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 59.3 bits (142), Expect = 3e-09
Identities = 57/154 (37%), Positives = 75/154 (48%), Gaps = 17/154 (11%)
Query: 33 RSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGAS 92
R R SR RS S+SRSRRRS+S R RRRS SR R G S +
Sbjct: 267 RRSRSRSRRRSHSKSRSRRRSKSPR--RRRSHSRER----------GRRSRSTSKTRDKK 314
Query: 93 PASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRS--RSLSLLRSLER-LRSSLSRLR 149
+ S PP+S S RSR A SR R RR RS RS RS +R L S S R
Sbjct: 315 KEDKEKKRSKTPPKSYSTARRSRSA-SRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRR 373
Query: 150 ERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSR 183
+ + +++++ RSR R R S + +S+ + +
Sbjct: 374 HKKEKKKDKDKERSRD-ERERSTSKKKKSKDKEK 406
Score = 57.4 bits (137), Expect = 1e-08
Identities = 70/211 (33%), Positives = 91/211 (43%), Gaps = 27/211 (12%)
Query: 23 RASSLPRSLPRSPRLCSRSRSR-SRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPS 81
R S RS R R S SR R SRSRSRRRS S RRRS+S R S S G
Sbjct: 246 RRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSH--SRERGRR 303
Query: 82 SPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRS--RSLSLLRSLE 139
S + + S PP+S S RSR A SR R RR RS RS RS +
Sbjct: 304 SRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSA-SRERRRRRSRSGTRSPKKPRSPK 362
Query: 140 R-LRSSLSRLRERLRRSRERERRRSRS-LSRSRLRSLRSRSRSRSRSLCGSG-------- 189
R L S S R + + +++++ RSR RS + +S+ + + R
Sbjct: 363 RKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKSESDKDVKQVT 422
Query: 190 -----EGPGLD------EVGRPVWLGSPRDR 209
E G D E +P+ GSP+ +
Sbjct: 423 RDYDEEEQGYDSEKEKKEEKKPIETGSPKTK 453
Score = 42.0 bits (97), Expect = 4e-04
Identities = 35/93 (37%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 103 PPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRR-------- 154
P +S + A R+R + S ++ + E+ R S SR R R RR
Sbjct: 208 PSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHR 267
Query: 155 -SRERERRRSRSLSRSRLRS---LRSRSRSRSR 183
SR R RRRS S SRSR RS R RS SR R
Sbjct: 268 RSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRER 300
Score = 27.7 bits (60), Expect = 8.7
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 21 PPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRS 67
PP++ S R + R R RSRS +RS ++ RS + R+ SRS S
Sbjct: 326 PPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPK--RKLSRSPS 370
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 58.5 bits (140), Expect = 5e-09
Identities = 50/119 (42%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 3 MSRLSLPRPSSPLSWPPPPPR---ASSLPRSLPRSPRLCSRSRSRSRSRSRRRSR---SL 56
M+R P P S S PPPR R RSPR RSRSRSRSRSR RSR S
Sbjct: 89 MARYGRP-PDSHHSRRGPPPRRYGGGGYGRR-SRSPRRRRRSRSRSRSRSRSRSRSRYSR 146
Query: 57 RWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSR 115
R R+RSRSR S S S S + S + SPPP +SRSR
Sbjct: 147 SKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKSRSR 205
Score = 58.5 bits (140), Expect = 5e-09
Identities = 48/98 (48%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 90 GASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLR 149
G P S S PPP R RR+RS R RR RSRS S RS R R S S+ R
Sbjct: 93 GRPPDSHHSRRGPPPRRYGG-GGYGRRSRSPRRR-RRSRSRSRSRSRSRSRSRYSRSKSR 150
Query: 150 ERLRRSRERERRRSRSLSRSRLRSL---RSRSRSRSRS 184
R R SR R +SRS RS+ +S RSRSRSRSRS
Sbjct: 151 SRTR-SRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRS 187
Score = 56.6 bits (135), Expect = 2e-08
Identities = 47/110 (42%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 84 GGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRS 143
GG SP + S RS S RSRSR +RS+ R R RSRS S RS R +S
Sbjct: 113 GGYGRRSRSPRRRRRSRSRSRSRSRS-RSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKS 171
Query: 144 SLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRSLCGSGEGPG 193
S + RSR R R RSRS S + S+SRSRS+S S E G
Sbjct: 172 KSS----SVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEG 217
Score = 45.8 bits (107), Expect = 3e-05
Identities = 37/89 (41%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 23 RASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWL----------RRRSRSRSRPFSS 72
R+ S RS R R SRSR+RSRSRS +SRS R R RSRSRSR S
Sbjct: 133 RSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
Query: 73 GPSGPSGPSSPGGPSSGGASPASEGSAMS 101
P S S SP EG+ S
Sbjct: 193 PPVSKRESKSRSRSKSPPKSPEEEGAVSS 221
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 57.8 bits (138), Expect = 8e-09
Identities = 62/159 (38%), Positives = 75/159 (47%), Gaps = 24/159 (15%)
Query: 33 RSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPS-SPGGPSS--- 88
RSPR RSRSR S SR RSRS R SRS P+S P S S SP S
Sbjct: 126 RSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRS---PYSRSPYSRSRYSRSPYSRSRYRE 182
Query: 89 ---GGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSL 145
GG+ +S G S+S SR +RS + SRS S +S RS
Sbjct: 183 SRYGGSHYSSSGY--------SNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKS 234
Query: 146 SRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRS 184
S + SR R R RS S++RS R + +S+SRSRS
Sbjct: 235 SSV------SRSRSRSRSSSMTRSPPRVSKRKSKSRSRS 267
Score = 49.7 bits (117), Expect = 2e-06
Identities = 53/139 (38%), Positives = 65/139 (46%), Gaps = 15/139 (10%)
Query: 29 RSLPRSPRLCSRSRSRSRSRSRRRSRS--LRWLRRRSRSRSRPFS-----SGPSGPSGPS 81
RS R P CSRSRSRSR R R SRS R RSR P+S G S S
Sbjct: 133 RSRSRGPS-CSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYS 191
Query: 82 SPGGPSS------GGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLL 135
S G +S S + GS+ S S+S S +RR++S R RSRS S+
Sbjct: 192 SSGYSNSRYSRYHSSRSHSKSGSSTSSRSA-STSKSSSARRSKSSSVSRSRSRSRSSSMT 250
Query: 136 RSLERLRSSLSRLRERLRR 154
RS R+ S+ R R +R
Sbjct: 251 RSPPRVSKRKSKSRSRSKR 269
Score = 35.4 bits (80), Expect = 0.042
Identities = 30/66 (45%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 24 ASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRS-LRWLRRRSRSRSRPFSSGPSGPSGPSS 82
AS+ S R + S SRSRSRSRS +RS R +R+S+SRSR S P P P
Sbjct: 221 ASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSR--SKRP--PKSPEE 276
Query: 83 PGGPSS 88
G SS
Sbjct: 277 EGQMSS 282
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 23 RASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRS 55
R+ S S+ RSP S+ +S+SRSRS+R +S
Sbjct: 241 RSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKS 273
Score = 27.7 bits (60), Expect = 8.7
Identities = 19/39 (48%), Positives = 19/39 (48%)
Query: 146 SRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRS 184
SR R RSR R SRS SRSR R R SRS
Sbjct: 125 SRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRS 163
>gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo
sapiens]
Length = 375
Score = 57.4 bits (137), Expect = 1e-08
Identities = 48/82 (58%), Positives = 53/82 (64%), Gaps = 10/82 (12%)
Query: 108 SSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLR---RSRERERR-RS 163
S RSRSR R R R R +SRS RS ER + S SR RER + RSRER+RR RS
Sbjct: 65 SHSRSRSRERRHRSRSRERKKSRS----RSRER-KKSRSRSRERKKSRSRSRERKRRIRS 119
Query: 164 RSLSRSRLRS-LRSRSRSRSRS 184
RS SRSR R RSRSR+RSRS
Sbjct: 120 RSRSRSRHRHRTRSRSRTRSRS 141
Score = 57.0 bits (136), Expect = 1e-08
Identities = 57/140 (40%), Positives = 65/140 (46%), Gaps = 36/140 (25%)
Query: 33 RSPRLCSRSRSRSRSRSR-RRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGA 91
R R SR RS SRSRSR RR RS R++SRSRSR
Sbjct: 55 RKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKS------------------ 96
Query: 92 SPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRS-SLSRLRE 150
RS S + R+RSR R RR RSRS S R R RS S +R R
Sbjct: 97 --------------RSRSRERKKSRSRSRER-KRRIRSRSRSRSRHRHRTRSRSRTRSRS 141
Query: 151 RLRRSR-ERERRRSRSLSRS 169
R R+ R E+ RR SRSLSR+
Sbjct: 142 RDRKKRIEKPRRFSRSLSRT 161
Score = 48.9 bits (115), Expect = 4e-06
Identities = 35/73 (47%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 114 SRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLR-RSRERERRRSRSLSRSRLR 172
S R + R SR S RS R R SR RER + RSR RER++SRS SR R +
Sbjct: 46 SENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKK 105
Query: 173 SLRSRSRSRSRSL 185
S RSRSR R R +
Sbjct: 106 S-RSRSRERKRRI 117
Score = 41.6 bits (96), Expect = 6e-04
Identities = 27/46 (58%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 23 RASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSR 68
R S RS R R+ SRSRSRSR R R RSRS R RSRSR R
Sbjct: 103 RKKSRSRSRERKRRIRSRSRSRSRHRHRTRSRS----RTRSRSRDR 144
Score = 39.7 bits (91), Expect = 0.002
Identities = 29/80 (36%), Positives = 37/80 (46%)
Query: 111 RSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSR 170
R S+ S+ + S + ERL SS + R+ R+ R RS S SRSR
Sbjct: 13 RHESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSR 72
Query: 171 LRSLRSRSRSRSRSLCGSGE 190
R RSRSR R +S S E
Sbjct: 73 ERRHRSRSRERKKSRSRSRE 92
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
Length = 238
Score = 56.6 bits (135), Expect = 2e-08
Identities = 56/154 (36%), Positives = 62/154 (40%), Gaps = 48/154 (31%)
Query: 36 RLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPAS 95
R R RSRSRSRS RSR R+ R RSRSR R
Sbjct: 121 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGR--------------------------- 153
Query: 96 EGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRS 155
+ SP RS SLR RSR LRR RS S+ R +S
Sbjct: 154 RSRSASPRRSRSISLR------RSRSASLRRSRSGSIK---------------GSRYFQS 192
Query: 156 RERERRRSRSLSRSRLRSLRSRSRSRSRSLCGSG 189
R R RSRS+SR R +SRS S RS SG
Sbjct: 193 PSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSG 226
Score = 40.8 bits (94), Expect = 0.001
Identities = 38/98 (38%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 26 SLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGG 85
S RS R R S RSRS S R RS SLR R S SR F S S S
Sbjct: 146 SRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISR 205
Query: 86 PSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRL 123
P S S + SP P RS S RR+ S R+
Sbjct: 206 PRS------SRSKSRSPSPKRSRSPSGSPRRSASPERM 237
>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
Length = 1007
Score = 56.6 bits (135), Expect = 2e-08
Identities = 57/157 (36%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 33 RSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGAS 92
+SP + + SRSR R + R LR + RSRS+ S S P S AS
Sbjct: 276 KSP-IINESRSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRSETDKEKKPIKSPSKDAS 334
Query: 93 PASEGSAMSPPPPRSSSLRS-----RSRRARSRLRLLRRFRSR-SLSLLRSLERLRSSLS 146
E + S P RS RS R + RSR LL RS+ S S R+L R + S
Sbjct: 335 SGKENRSPSRRPGRSPKRRSLSPKPRDKSRRSRSPLLNDRRSKQSKSPSRTLSPGRRAKS 394
Query: 147 RLRERLRRSRERERRRS-RSLSRSRLRSLRSRSRSRS 182
R ER RR ER R S R+ R + S R RS+ S
Sbjct: 395 RSLERKRREPERRRLSSPRTRPRDDILSRRERSKDAS 431
Score = 56.2 bits (134), Expect = 2e-08
Identities = 68/187 (36%), Positives = 80/187 (42%), Gaps = 31/187 (16%)
Query: 13 SPLSWPPPPPRASSL---PRSLPR---SPRLCSRSRSRSRSRSR-----RRSRSLRWLRR 61
SP P P+ SL PR R SP L R +S+S SR RR++S R+
Sbjct: 341 SPSRRPGRSPKRRSLSPKPRDKSRRSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRSLERK 400
Query: 62 RSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRL 121
R R SS + P S ASP + S P R S RR+RS L
Sbjct: 401 RREPERRRLSSPRTRPRDDILSRRERSKDASPINRWS-----PTRRRSRSPIRRRSRSPL 455
Query: 122 RLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSR 181
R RSRS R RS R R+R RRSR R RRRSRS R RSRS+ +
Sbjct: 456 R-----RSRS-------PRRRSRSPRRRDRGRRSRSRLRRRSRSRGG---RRRRSRSKVK 500
Query: 182 SRSLCGS 188
GS
Sbjct: 501 EDKFKGS 507
Score = 42.0 bits (97), Expect = 4e-04
Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 26/203 (12%)
Query: 36 RLCSRSRSRSRSRSRRRSRS-----------LRWLRRRSRSRSRPFSSGPSGPSGPSSPG 84
++ ++ RS+SRS+ R R RS ++ RS+S+ R S PS S
Sbjct: 177 KITTKKRSKSRSKERTRHRSDKKKSKGGIEIVKEKTTRSKSKERKKSKSPSKRSKSQDQA 236
Query: 85 ----GPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLER 140
P+ S G A SP + + R + ++ RSR ++
Sbjct: 237 RKSKSPTLRRRSQEKIGKARSPTDDKVKIEDKSKSKDRKKSPIINESRSRDRG-----KK 291
Query: 141 LRSSLS-RLRERLRRSRERERRRSRSLSRSRLRSLRSRSR--SRSRSLCGSGEGPGLDEV 197
RS + R + + RRSR +ER+ RS + + ++S S+ S + PG
Sbjct: 292 SRSPVDLRGKSKDRRSRSKERKSKRSETDKEKKPIKSPSKDASSGKENRSPSRRPGRSPK 351
Query: 198 GRPVWLGSPRDRPPPQDTGRPIL 220
R + SP+ R + + P+L
Sbjct: 352 RRSL---SPKPRDKSRRSRSPLL 371
Score = 38.5 bits (88), Expect = 0.005
Identities = 33/80 (41%), Positives = 39/80 (48%), Gaps = 18/80 (22%)
Query: 3 MSRLSLPRPSSPLS-WPPP--------------PPRASSLPRSLPRSPRLCSRSR-SRSR 46
+SR + +SP++ W P P R S PR RSPR R R SRSR
Sbjct: 421 LSRRERSKDASPINRWSPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSR 480
Query: 47 SRSRRRSRSLRWLRRRSRSR 66
R R RSR R RRRSRS+
Sbjct: 481 LRRRSRSRGGR--RRRSRSK 498
Score = 37.0 bits (84), Expect = 0.014
Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 106 RSSSLRSRSRRARSRLRLLRRFRSRSLSLLR---SLERLRSSLSRLRERLRRSRERERRR 162
RSSS + + +++ +R +SRS R ++ + + ++E+ RS+ +ER++
Sbjct: 163 RSSSTKGKLELVDNKITTKKRSKSRSKERTRHRSDKKKSKGGIEIVKEKTTRSKSKERKK 222
Query: 163 SRS---LSRSRLRSLRSRS---RSRSRSLCGSGEGPGLDEV 197
S+S S+S+ ++ +S+S R RS+ G P D+V
Sbjct: 223 SKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKARSPTDDKV 263
Score = 32.0 bits (71), Expect = 0.46
Identities = 56/209 (26%), Positives = 80/209 (38%), Gaps = 27/209 (12%)
Query: 23 RASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSS 82
R+ S R +SP RS+S+ + R LRRRS+ + S
Sbjct: 214 RSKSKERKKSKSPS------KRSKSQDQARKSKSPTLRRRSQEKIGKARSPTDDKVKIED 267
Query: 83 PGGPSSGGASPASEGSAMSPPPPRSSSL-----RSRSRRARSRLRLLRRFRS-RSLSLLR 136
SP S +S S +S+ RR+RS+ R +R + + ++
Sbjct: 268 KSKSKDRKKSPIINESRSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRSETDKEKKPIK 327
Query: 137 SLERLRSSLSRLRERLRRSRERERRRSRS--------LSRSRL----RSLRSRSRSRSRS 184
S + SS R RR +RRS S SRS L RS +S+S SR+ S
Sbjct: 328 SPSKDASSGKENRSPSRRPGRSPKRRSLSPKPRDKSRRSRSPLLNDRRSKQSKSPSRTLS 387
Query: 185 LCGSGEGPGLDEVGRPV---WLGSPRDRP 210
+ L+ R L SPR RP
Sbjct: 388 PGRRAKSRSLERKRREPERRRLSSPRTRP 416
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 56.2 bits (134), Expect = 2e-08
Identities = 43/98 (43%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 34 SPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASP 93
S R S S SRSRSRSR RS S R RS SR R S G S S G +SP
Sbjct: 214 SSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRS----HRGSSSP 269
Query: 94 ASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRS 131
+ S P + RSRSR + S R RR RSRS
Sbjct: 270 RKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRS 307
Score = 54.3 bits (129), Expect = 9e-08
Identities = 57/144 (39%), Positives = 65/144 (45%), Gaps = 16/144 (11%)
Query: 39 SRSRSRS-RSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEG 97
SRS+SRS SRS RS S R RSRSRSR SS S S S G S +S
Sbjct: 202 SRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSR 261
Query: 98 SAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRE 157
S PR RS S + S R +R RSRS SS ++R RSR
Sbjct: 262 SHRGSSSPRK---RSYSSSSSSPERNRKRSRSRS-----------SSSGDRKKRRTRSRS 307
Query: 158 RERRRSRSLSRSRLRSLRSRSRSR 181
ERR RS S S RS S+ +
Sbjct: 308 PERRH-RSSSGSSHSGSRSSSKKK 330
Score = 53.1 bits (126), Expect = 2e-07
Identities = 54/147 (36%), Positives = 64/147 (43%), Gaps = 10/147 (6%)
Query: 39 SRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGS 98
S ++ +S RRSRS R S SRS SS PS S SS + S S
Sbjct: 188 SEEEDSNKKKSNRRSRSKS---RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSS 244
Query: 99 AMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRER 158
+ R S RS SR R +R S S S S ER R R R R S +R
Sbjct: 245 SRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSS---SPERNR---KRSRSRSSSSGDR 298
Query: 159 ERRRSRSLS-RSRLRSLRSRSRSRSRS 184
++RR+RS S R RS S S SRS
Sbjct: 299 KKRRTRSRSPERRHRSSSGSSHSGSRS 325
Score = 53.1 bits (126), Expect = 2e-07
Identities = 50/116 (43%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 4 SRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRS 63
SR S R SS S P +SS RS RS R S S+SRSRS SR RSRS R + RS
Sbjct: 206 SRSSHSRSSSRSSSP-----SSSRSRSRSRS-RSSSSSQSRSRSSSRERSRS-RGSKSRS 258
Query: 64 RSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARS 119
SRS SS P S SS P S S+ R + RS RR RS
Sbjct: 259 SSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHRS 314
Score = 35.0 bits (79), Expect = 0.054
Identities = 32/68 (47%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 125 RRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRS----RLRSLRSRSRS 180
RR RS+S S SS S R R RSR R S+S SRS R RS S+SRS
Sbjct: 200 RRSRSKSRSSHSRSSSRSSSPSSSRSR-SRSRSRSSSSSQSRSRSSSRERSRSRGSKSRS 258
Query: 181 RSRSLCGS 188
SRS GS
Sbjct: 259 SSRSHRGS 266
Score = 31.2 bits (69), Expect = 0.78
Identities = 32/78 (41%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 4 SRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRS---RSRRRSRSLRWLR 60
SR S R SS PR S S R RSRSRS S R +RR+RS R
Sbjct: 251 SRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRS-RSPE 309
Query: 61 RRSRSRSRPFSSGPSGPS 78
RR RS S SG S
Sbjct: 310 RRHRSSSGSSHSGSRSSS 327
Score = 30.0 bits (66), Expect = 1.7
Identities = 27/63 (42%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 23 RASSLPRSLPRSPRLCS--RSRSRSRSRSRRR-SRSLRWLRRRSRSRSRPFSSGPSGPSG 79
R SS PR S S R+R RSRSRS R R R RS R SSG S
Sbjct: 264 RGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHRSSSGSSHSGS 323
Query: 80 PSS 82
SS
Sbjct: 324 RSS 326
Score = 29.6 bits (65), Expect = 2.3
Identities = 23/44 (52%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 146 SRLRERLRRSRERERR-RSRSLSRSRLRSLRSRSRSRSRSLCGS 188
S ++ RRSR + R SRS SRS S SRSRSRSRS S
Sbjct: 193 SNKKKSNRRSRSKSRSSHSRSSSRSSSPS-SSRSRSRSRSRSSS 235
>gi|46309849 hypothetical protein LOC57035 [Homo sapiens]
Length = 290
Score = 56.2 bits (134), Expect = 2e-08
Identities = 67/175 (38%), Positives = 70/175 (40%), Gaps = 59/175 (33%)
Query: 17 WPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSG 76
WP P S P + R SR SRSRSR SRS SRS SR S S
Sbjct: 9 WPGSPQEKDS-----PSTSRSGGSSRLSSRSRSRSFSRS-------SRSHSRVSSRFSS- 55
Query: 77 PSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLR 136
RS +SRSR R R RR+ SRS
Sbjct: 56 -----------------------------RSRRSKSRSRSRRRHQRKYRRY-SRSY---- 81
Query: 137 SLERLRSSLSRLRERLRRSRERE----RRRSRSLSRSRLRSLRSRSRSRSRSLCG 187
S SR R R RR RER RR RS SR R RS RSRSRSR RS CG
Sbjct: 82 -------SRSRSRSRSRRYRERRYGFTRRYYRSPSRYRSRS-RSRSRSRGRSYCG 128
Score = 44.3 bits (103), Expect = 9e-05
Identities = 64/201 (31%), Positives = 81/201 (40%), Gaps = 25/201 (12%)
Query: 23 RASSLPRSLPRSPRLCSRSRSRSR---SRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSG 79
R+ S RS R+ SR SRSR SRSR R R R RR SRS SR S S
Sbjct: 35 RSRSFSRSSRSHSRVSSRFSSRSRRSKSRSRSRRRHQRKYRRYSRSYSRSRSRSRSRRYR 94
Query: 80 PSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSR-RARSRLRLLRRFRSRSLSLLRSL 138
G SP S RSRSR R+RSR R + R+ ++ R
Sbjct: 95 ERRYGFTRRYYRSP--------------SRYRSRSRSRSRSR---GRSYCGRAYAIARGQ 137
Query: 139 ERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRSLCGSGEGPGLDEVG 198
+ E R R+R R RSRS + RL S + R + + + G +
Sbjct: 138 RYYGFGRTVYPEEHSRWRDRSRTRSRSRTPFRL-SEKDRMELLEIAKTNAAKALGTTNID 196
Query: 199 RPVWLGSPRDRPPPQDTGRPI 219
P S R P ++T R I
Sbjct: 197 LP---ASLRTVPSAKETSRGI 214
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 55.5 bits (132), Expect = 4e-08
Identities = 55/149 (36%), Positives = 63/149 (42%), Gaps = 25/149 (16%)
Query: 84 GGPSSGGA------------SPASEGSAMSPPPPRSSSL-RSRSRRARSRLRLLRRFRSR 130
GG GGA S E SP P R R R RR RSR R R R R
Sbjct: 197 GGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRR 256
Query: 131 SLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSR--SRLRSLRSRSRSRSRSLCGS 188
S RS +R R S SR +E RRSRER + + R R SR R R R R L G
Sbjct: 257 S----RSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGG 312
Query: 189 GEGPGLDEVGRPVWLG-SPRDRPPPQDTG 216
G ++ P G +P D PP + G
Sbjct: 313 G-----GDMAEPSEAGDAPPDDGPPGELG 336
Score = 44.7 bits (104), Expect = 7e-05
Identities = 63/212 (29%), Positives = 74/212 (34%), Gaps = 62/212 (29%)
Query: 22 PRASSLP---RSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRS-------RSRPFS 71
P S LP R R RSR R + R RRRSRS R RRRSRS RSR S
Sbjct: 223 PGPSPLPHRDRDRDRERERRERSRERDKERERRRSRS-RDRRRRSRSRDKEERRRSRERS 281
Query: 72 SGPSGP-----------------------SGPSSPGGPSSGGASPASEG--SAMSPPPPR 106
G PS G +P +G + P P
Sbjct: 282 KDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPD 341
Query: 107 SSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSL 166
+ R R ER RS S RER RR R+R+R R R
Sbjct: 342 GPEEKGRD---------------------RDRERRRSHRSE-RER-RRDRDRDRDRDREH 378
Query: 167 SRSRLRSLRSRSRSRSRSLCGSGEGPGLDEVG 198
R S R R +R G G+ GL+ +G
Sbjct: 379 KRGERGSERGRDEARGG---GGGQDNGLEGLG 407
Score = 36.6 bits (83), Expect = 0.019
Identities = 27/90 (30%), Positives = 28/90 (31%)
Query: 8 LPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRS 67
+ PS PP L P P R R R R RS R R R R R R R
Sbjct: 316 MAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRD 375
Query: 68 RPFSSGPSGPSGPSSPGGPSSGGASPASEG 97
R G G GG EG
Sbjct: 376 REHKRGERGSERGRDEARGGGGGQDNGLEG 405
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 55.5 bits (132), Expect = 4e-08
Identities = 63/179 (35%), Positives = 73/179 (40%), Gaps = 19/179 (10%)
Query: 34 SPRLCSR---SRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSS-G 89
SP L S SRS SR + R + +RS P SG SG P GG
Sbjct: 262 SPSLSSHYSDSRSPSRLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRS 321
Query: 90 GASPASEGSAMSPP-PPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRL 148
GA GSA SPP P S S R R + A + R + + R +
Sbjct: 322 GAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAG 381
Query: 149 RERLRRSRERERRRSRSLS-----RSRLR--------SLRSRSRSRSRSLCGSGEG-PG 193
RR R R RRRSRS + R R R S RS SR+RS S GSG G PG
Sbjct: 382 GAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPG 440
Score = 51.2 bits (121), Expect = 7e-07
Identities = 80/244 (32%), Positives = 92/244 (37%), Gaps = 67/244 (27%)
Query: 10 RPSSPLSWPPPPPRA--SSLPRSLPRSPRLCSRS-----RSRSRSRSRRRSRSLRWLRRR 62
R + + P PP R S PRS P S R+ R R R R RRRSRS RR
Sbjct: 346 RDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRR 405
Query: 63 --------------SRSRSRPFSSGPSGPSGPSSPG-GPSSGG----------------- 90
SRS SR SS SG SG +PG GP G
Sbjct: 406 RGRRRPRPAPPRGSSRSLSRARSSSDSG-SGRGAPGPGPEPGSERGHGGHGKRAKERPPR 464
Query: 91 ASPAS----------------EGSAMSP-PPPRS-----SSLRSRSRRARSRLRLLRRFR 128
A PAS + S+ SP P PRS S +SRSR A R
Sbjct: 465 ARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKR----PHSP 520
Query: 129 SRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRSLCGS 188
SRS S + L R + R R R RRRSRS S R R S S R + +
Sbjct: 521 SRSPSPKKPLSRDKDGEGRARHS-EAEATRARRRSRSYSPIRKRRRDSPSFMEPRRITSA 579
Query: 189 GEGP 192
+ P
Sbjct: 580 RKRP 583
Score = 38.1 bits (87), Expect = 0.006
Identities = 35/129 (27%), Positives = 47/129 (36%), Gaps = 7/129 (5%)
Query: 73 GPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSL 132
GP P+S G + S+ SPPP + + RR+R + RL S
Sbjct: 137 GPVDCDCPASCYRGHRGYRTKHWSSSSASPPPKKKKKKKGGHRRSRKKRRLESECSCGSS 196
Query: 133 SLLRSLE-------RLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRSL 185
S LR + R RS R+R RSR + +R + S R R
Sbjct: 197 SPLRKKKKSVKKHRRDRSDSGSRRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHRHS 256
Query: 186 CGSGEGPGL 194
GS P L
Sbjct: 257 SGSSHSPSL 265
Score = 35.4 bits (80), Expect = 0.042
Identities = 45/137 (32%), Positives = 57/137 (41%), Gaps = 13/137 (9%)
Query: 7 SLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSR--SRSRSRSRRRSRSLRWLRRRSR 64
S R S P P R+ S + L R R+R +R+RRRSRS +R+R R
Sbjct: 506 SKSRSRSAEKRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEATRARRRSRSYSPIRKRRR 565
Query: 65 S-----RSRPFSSGPSGPSGPSSPGGPSSGGASPASEGS----AMSPPPPRS-SSLRSRS 114
R +S P P PSS + +S+ S + SP P S S SRS
Sbjct: 566 DSPSFMEPRRITSARKRPI-PYYRPSPSSSSSCLSSDYSTRSHSRSPSPGHSHGSYSSRS 624
Query: 115 RRARSRLRLLRRFRSRS 131
RSR R R S S
Sbjct: 625 HGTRSRTRSPSRTPSPS 641
Score = 33.9 bits (76), Expect = 0.12
Identities = 59/200 (29%), Positives = 70/200 (35%), Gaps = 37/200 (18%)
Query: 9 PRPSSPLSWPPPPP----RASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSR 64
P + P S P P R +S RSP RS S SRS S+ RSRS
Sbjct: 462 PPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRS--------- 512
Query: 65 SRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRAR------ 118
+ RP S PS P P G A A + R S S R+ R
Sbjct: 513 AEKRPHS--PSRSPSPKKPLSRDKDGEGRARHSEAEATRARRRSRSYSPIRKRRRDSPSF 570
Query: 119 --------SRLRLLRRFR---SRSLSLLRSLERLRS-----SLSRLRERLRRSRERERRR 162
+R R + +R S S S L S RS S R R
Sbjct: 571 MEPRRITSARKRPIPYYRPSPSSSSSCLSSDYSTRSHSRSPSPGHSHGSYSSRSHGTRSR 630
Query: 163 SRSLSRSRLRSLRSRSRSRS 182
+RS SR+ S SRS S S
Sbjct: 631 TRSPSRTPSPSYHSRSSSES 650
>gi|239756568 PREDICTED: similar to BCL2-associated transcription
factor 1 [Homo sapiens]
Length = 869
Score = 54.7 bits (130), Expect = 7e-08
Identities = 64/214 (29%), Positives = 80/214 (37%), Gaps = 24/214 (11%)
Query: 26 SLPRSLPRSPRLCSRSR--SRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSP 83
S RS R R SRSR SRSRSR R SR R R +R+ RP+ G
Sbjct: 23 SRSRSHSRKKRYRSRSRTYSRSRSRDRMYSRDYRRDYRNNRAMRRPYGYRGRGRGYYQGG 82
Query: 84 GGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRS 143
GG G S P R RSRSR + R +R RSRS RS RS
Sbjct: 83 GGRYHRGGYRPVWNRRHSRSPRRG---RSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRS 139
Query: 144 SLSRLRERLRRSRERERRRSRSLSRSRLRS-------LRSRSRSRSRSLCGSGEGPGLDE 196
S SR +S +RR S+ + L+S+S+ + +DE
Sbjct: 140 SSSRSSSPYSKSPVSKRRGSQEKQTKKAEGELQEESPLKSKSQEEPKDTFEHDSSESIDE 199
Query: 197 VGR------PVWLG------SPRDRPPPQDTGRP 218
+ +W G SPR P P
Sbjct: 200 FNKSSATCGDIWPGLSAYDXSPRSPHSPSPIATP 233
Score = 40.4 bits (93), Expect = 0.001
Identities = 26/58 (44%), Positives = 29/58 (50%)
Query: 17 WPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGP 74
W R+ RS RSP+ S S RSRSRSRR RS R R S S P+S P
Sbjct: 95 WNRRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSP 152
Score = 34.3 bits (77), Expect = 0.092
Identities = 35/104 (33%), Positives = 44/104 (42%), Gaps = 21/104 (20%)
Query: 108 SSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLS 167
S+ RS S R++SR + R RSRS S R R R R+ R R R R S
Sbjct: 4 SNSRSHSSRSKSRSQSSSRSRSRS----------HSRKKRYRSR-SRTYSRSRSRDRMYS 52
Query: 168 RSRLRSLRSRSRSRSRSLCGSGEGPGLDEVG---------RPVW 202
R R R+ +R+ R G G G + G RPVW
Sbjct: 53 RDYRRDYRN-NRAMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVW 95
Score = 33.5 bits (75), Expect = 0.16
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 145 LSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRS 184
+ R R SR + R +S S SRSR S + R RSRSR+
Sbjct: 1 MGRSNSRSHSSRSKSRSQSSSRSRSRSHSRKKRYRSRSRT 40
>gi|16905517 FUS interacting protein (serine-arginine rich) 1
isoform 2 [Homo sapiens]
Length = 262
Score = 54.7 bits (130), Expect = 7e-08
Identities = 54/146 (36%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 40 RSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSG-PSGPSSPGGPSSGGASPASEGS 98
RSRSRS R R RSRS + RRS S P +S P+G P S S
Sbjct: 118 RSRSRSYERRRSRSRSFDYNYRRSYS---PRNSRPTGRPRRSRSHSDNDRFKHRNRSFSR 174
Query: 99 AMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRER 158
+ S RS S + +A+SR R ++R S S +S +E SR++
Sbjct: 175 SKSNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKE----SRKK 230
Query: 159 ERRRSRSLSRSRLRSLRSRSRSRSRS 184
E RS+S SRS+ RS RS+SRSRS
Sbjct: 231 EPPRSKSQSRSQSRS---RSKSRSRS 253
Score = 51.6 bits (122), Expect = 6e-07
Identities = 50/144 (34%), Positives = 68/144 (47%), Gaps = 9/144 (6%)
Query: 39 SRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGS 98
SRSRS R RSR RS + R S SRP S + + S+ +
Sbjct: 119 SRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKSN 178
Query: 99 AMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRER 158
+ S RS S + +A+SR R ++R S S +S SR + SR++
Sbjct: 179 SRS----RSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSG-SRYE---KESRKK 230
Query: 159 ERRRSRSLSRSRLRSLRSRSRSRS 182
E RS+S SRS+ RS RS+SRSRS
Sbjct: 231 EPPRSKSQSRSQSRS-RSKSRSRS 253
Score = 43.5 bits (101), Expect = 2e-04
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 16 SWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPS 75
S P PR S RS + R R+RS SRS+S RSRS ++ +++SR S+ +
Sbjct: 147 SRPTGRPRRS---RSHSDNDRFKHRNRSFSRSKSNSRSRSKSQPKKEMKAKSRSRSASHT 203
Query: 76 GPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLR 122
G S + + E + PPRS S R+RS+ R
Sbjct: 204 KTRGTSKTDSKTHYKSGSRYEKESRKKEPPRSKSQSRSQSRSRSKSR 250
Score = 36.2 bits (82), Expect = 0.024
Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 113 RSRRARSRLRLLRRFRSRSLSL-LRSLERLRSSLSRLRERLRRS---RERERRRSRSLSR 168
R RR+RSR RR RSRS R R+S R R RS +R + R+RS SR
Sbjct: 115 RYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSR 174
Query: 169 SRLRSLRSRSRSRSR 183
S+ S RSRS+S+ +
Sbjct: 175 SKSNS-RSRSKSQPK 188
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 35 PRLCSRSRSRSRSRSRRRSRS 55
PR S+SRS+SRSRS+ RSRS
Sbjct: 233 PRSKSQSRSQSRSRSKSRSRS 253
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 39 SRSRSRSRSRSRRRSRSLRWLRRRS 63
S+S+SRS+SRSR +SRS W +S
Sbjct: 235 SKSQSRSQSRSRSKSRSRSWTSPKS 259
Score = 28.9 bits (63), Expect = 3.9
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 39 SRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSG 73
SR + RS+S+ RS+S + RSRS + P SSG
Sbjct: 227 SRKKEPPRSKSQSRSQSRSRSKSRSRSWTSPKSSG 261
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,454,628
Number of Sequences: 37866
Number of extensions: 767943
Number of successful extensions: 30082
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 1368
Number of HSP's that attempted gapping in prelim test: 12849
Number of HSP's gapped (non-prelim): 11989
length of query: 231
length of database: 18,247,518
effective HSP length: 99
effective length of query: 132
effective length of database: 14,498,784
effective search space: 1913839488
effective search space used: 1913839488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.