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Search of human proteins with 239746261
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746261 PREDICTED: hypothetical protein XP_002343718 [Homo
sapiens]
(113 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757256 PREDICTED: hypothetical protein XP_002345223 [Homo ... 230 2e-61
gi|239751761 PREDICTED: hypothetical protein [Homo sapiens] 230 2e-61
gi|239746261 PREDICTED: hypothetical protein XP_002343718 [Homo ... 230 2e-61
gi|239757559 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens] 33 0.064
gi|102469037 jun D proto-oncogene [Homo sapiens] 32 0.083
gi|7661864 USP6 N-terminal like isoform 1 [Homo sapiens] 32 0.11
gi|122937432 USP6 N-terminal like isoform 2 [Homo sapiens] 32 0.11
gi|46397390 pogo transposable element with ZNF domain isoform 1 ... 32 0.11
gi|46397394 pogo transposable element with ZNF domain isoform 2 ... 32 0.11
gi|239743834 PREDICTED: similar to Putative uncharacterized prot... 32 0.11
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 32 0.11
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 32 0.11
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 32 0.11
gi|22035600 mitogen-activated protein kinase kinase kinase kinas... 32 0.14
gi|28875786 FCH and double SH3 domains 1 [Homo sapiens] 32 0.14
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 31 0.19
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 31 0.19
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 31 0.19
gi|50593110 5' nucleotidase, cytosolic IB isoform 1 [Homo sapiens] 31 0.19
gi|50593108 5' nucleotidase, cytosolic IB isoform 2 [Homo sapiens] 31 0.19
gi|13375756 occludin/ELL domain containing 1 [Homo sapiens] 31 0.19
gi|169211554 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|169211959 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|169211178 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|46195763 metastasis suppressor 1-like [Homo sapiens] 31 0.24
gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens] 30 0.32
gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens] 30 0.32
gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens] 30 0.32
gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens] 30 0.32
>gi|239757256 PREDICTED: hypothetical protein XP_002345223 [Homo
sapiens]
Length = 113
Score = 230 bits (587), Expect = 2e-61
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MALPRDQNGQNPPSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARLGLLV 60
MALPRDQNGQNPPSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARLGLLV
Sbjct: 1 MALPRDQNGQNPPSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARLGLLV 60
Query: 61 TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLRTRAWA 113
TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLRTRAWA
Sbjct: 61 TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLRTRAWA 113
>gi|239751761 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 230 bits (587), Expect = 2e-61
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MALPRDQNGQNPPSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARLGLLV 60
MALPRDQNGQNPPSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARLGLLV
Sbjct: 1 MALPRDQNGQNPPSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARLGLLV 60
Query: 61 TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLRTRAWA 113
TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLRTRAWA
Sbjct: 61 TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLRTRAWA 113
>gi|239746261 PREDICTED: hypothetical protein XP_002343718 [Homo
sapiens]
Length = 113
Score = 230 bits (587), Expect = 2e-61
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MALPRDQNGQNPPSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARLGLLV 60
MALPRDQNGQNPPSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARLGLLV
Sbjct: 1 MALPRDQNGQNPPSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARLGLLV 60
Query: 61 TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLRTRAWA 113
TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLRTRAWA
Sbjct: 61 TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLRTRAWA 113
>gi|239757559 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 34.7 bits (78), Expect = 0.017
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 56 LGLLVTSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRP 100
LG LA+PPG+ + G P P+ +APLAP PH P
Sbjct: 143 LGTRERPLAAPPGNCARSRREGPSRPAPT--GAAPLAPPAPHAPP 185
>gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens]
Length = 398
Score = 32.7 bits (73), Expect = 0.064
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Query: 4 PRDQNGQN--PPSRSSLRVTLKVTPMDHARGPARTDRS-VWIPRSRFPPQNFQARLGLLV 60
P + G + PP++ R + + R P R S VW P S+
Sbjct: 105 PSESTGSSTAPPTKRHCRSLSEPEELVRCRSPWRPGSSKVWTPVSK-------------- 150
Query: 61 TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHP 98
GSA+ SPG LP ++ S+ P +P P P
Sbjct: 151 -RRCDSGGSATRQGSPGAVLPRSAVWSTGPTSPATPRP 187
>gi|102469037 jun D proto-oncogene [Homo sapiens]
Length = 347
Score = 32.3 bits (72), Expect = 0.083
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 47 FPPQNFQARLGLLVTSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRV--SR 104
FPP LG PP A+L P T VPS S PL+P + R+ R
Sbjct: 222 FPPPPPPGALG--------PPRLAALKDEPQTVPDVPSFGESPPLSPIDMDTQERIKAER 273
Query: 105 LRLRTR 110
RLR R
Sbjct: 274 KRLRNR 279
>gi|7661864 USP6 N-terminal like isoform 1 [Homo sapiens]
Length = 828
Score = 32.0 bits (71), Expect = 0.11
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 13 PSRSSLRVTLKVTPMDHARGPARTD---RSVWIPRSRFPPQ----NFQARLGLLVTSLAS 65
PS+ S + T KV P HAR P++ D R + P S P N +S AS
Sbjct: 596 PSKVSNKFTFKVQPPSHARYPSQLDGEARGLAHPPSYSNPPVYHGNSPKHFPTANSSFAS 655
Query: 66 PPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRP 100
P S +P +L+ SA +P K + RP
Sbjct: 656 PQFSPGTQLNPSRRPHGSTLSVSA--SPEKSYSRP 688
>gi|122937432 USP6 N-terminal like isoform 2 [Homo sapiens]
Length = 845
Score = 32.0 bits (71), Expect = 0.11
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 13 PSRSSLRVTLKVTPMDHARGPARTD---RSVWIPRSRFPPQ----NFQARLGLLVTSLAS 65
PS+ S + T KV P HAR P++ D R + P S P N +S AS
Sbjct: 613 PSKVSNKFTFKVQPPSHARYPSQLDGEARGLAHPPSYSNPPVYHGNSPKHFPTANSSFAS 672
Query: 66 PPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRP 100
P S +P +L+ SA +P K + RP
Sbjct: 673 PQFSPGTQLNPSRRPHGSTLSVSA--SPEKSYSRP 705
>gi|46397390 pogo transposable element with ZNF domain isoform 1
[Homo sapiens]
Length = 1410
Score = 32.0 bits (71), Expect = 0.11
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 11 NPPSRSSLRVTLKVTPMDHAR-GPART---DRSVWIPRSRFPPQNFQARLGLLVTSLASP 66
NP RSS + +T + H+R G R DR+V ++ +PP +F V S +
Sbjct: 837 NPSHRSSSILPRGLTWIAHSRHGQTRDRVHDRNV---KNMYPPPSFPTNKAATVKSAGAT 893
Query: 67 PGSASLDSSPGTELPVPSLASSAPLAPTKPHPR 99
P +P +PS AS+A PT HP+
Sbjct: 894 PAEPEELLTPLAPA-LPSPASTATPPPTPTHPQ 925
>gi|46397394 pogo transposable element with ZNF domain isoform 2
[Homo sapiens]
Length = 1357
Score = 32.0 bits (71), Expect = 0.11
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 11 NPPSRSSLRVTLKVTPMDHAR-GPART---DRSVWIPRSRFPPQNFQARLGLLVTSLASP 66
NP RSS + +T + H+R G R DR+V ++ +PP +F V S +
Sbjct: 784 NPSHRSSSILPRGLTWIAHSRHGQTRDRVHDRNV---KNMYPPPSFPTNKAATVKSAGAT 840
Query: 67 PGSASLDSSPGTELPVPSLASSAPLAPTKPHPR 99
P +P +PS AS+A PT HP+
Sbjct: 841 PAEPEELLTPLAPA-LPSPASTATPPPTPTHPQ 872
>gi|239743834 PREDICTED: similar to Putative uncharacterized
protein C21orf15 [Homo sapiens]
Length = 109
Score = 32.0 bits (71), Expect = 0.11
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 61 TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHP 98
TSL+ PPG + GT LP P+ + P P P P
Sbjct: 22 TSLSHPPGQRPNSLTAGTSLPYPAGQQALPPTPLLPSP 59
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 32.0 bits (71), Expect = 0.11
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 64 ASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPR 99
A PPGS L PG PV L + P T P P+
Sbjct: 769 AGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQ 804
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 32.0 bits (71), Expect = 0.11
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 64 ASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPR 99
A PPGS L PG PV L + P T P P+
Sbjct: 354 AGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQ 389
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 32.0 bits (71), Expect = 0.11
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 64 ASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPR 99
A PPGS L PG PV L + P T P P+
Sbjct: 534 AGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQ 569
>gi|22035600 mitogen-activated protein kinase kinase kinase kinase 2
[Homo sapiens]
Length = 820
Score = 31.6 bits (70), Expect = 0.14
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 66 PPGSASLDSSPGTELPVPSLASSAPLAPT 94
PP L S PGT P PS +S+PL PT
Sbjct: 415 PPAEEPLSSPPGTLPPPPSGPNSSPLLPT 443
>gi|28875786 FCH and double SH3 domains 1 [Homo sapiens]
Length = 690
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/47 (46%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 52 FQARLG----LLVTSLASPPGSASLDSSPGTELPVPSLASSAPLAPT 94
F R+G LLV L PPG L S P LP PS S +P APT
Sbjct: 592 FGGRVGVFPSLLVEELLGPPGPPEL-SDPEQMLPSPSPPSFSPPAPT 637
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 31.2 bits (69), Expect = 0.19
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 63 LASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRV 102
++ PPG + L S P T P P L P P+ P P V
Sbjct: 154 ISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPPV 193
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 60 VTSLASPP---GSASLDSSPGTELPVPSLASSAPLAPTKPHPRP 100
V SPP S S+ + P P P LA AP P P P P
Sbjct: 193 VLEALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPPPVPAPAP 236
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 31.2 bits (69), Expect = 0.19
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 63 LASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRV 102
++ PPG + L S P T P P L P P+ P P V
Sbjct: 154 ISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPPV 193
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 60 VTSLASPP---GSASLDSSPGTELPVPSLASSAPLAPTKPHPRP 100
V SPP S S+ + P P P LA AP P P P P
Sbjct: 193 VLEALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPPPVPAPAP 236
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 31.2 bits (69), Expect = 0.19
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 63 LASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRV 102
++ PPG + L S P T P P L P P+ P P V
Sbjct: 154 ISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPPV 193
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 60 VTSLASPP---GSASLDSSPGTELPVPSLASSAPLAPTKPHPRP 100
V SPP S S+ + P P P LA AP P P P P
Sbjct: 193 VLEALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPPPVPAPAP 236
>gi|50593110 5' nucleotidase, cytosolic IB isoform 1 [Homo sapiens]
Length = 610
Score = 31.2 bits (69), Expect = 0.19
Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 17/97 (17%)
Query: 30 ARGPARTDRSVWIPRSRFPPQNFQARLGLLVTSLASPPGSASL-DSSPGTELPVPSLA-- 86
+R P+ S+ PRSR N A+L TS +P S SL DSSP PSL
Sbjct: 125 SRSPSTKAPSIDEPRSR----NTSAKLPSSSTSSRTPSTSPSLHDSSPPPLSGQPSLQPP 180
Query: 87 ---------SSAPLAPTKPHPRPRVS-RLRLRTRAWA 113
S P P +P P R S +++ AWA
Sbjct: 181 ASPQLPRSLDSRPPTPPEPDPGSRRSTKMQENPEAWA 217
>gi|50593108 5' nucleotidase, cytosolic IB isoform 2 [Homo sapiens]
Length = 550
Score = 31.2 bits (69), Expect = 0.19
Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 17/97 (17%)
Query: 30 ARGPARTDRSVWIPRSRFPPQNFQARLGLLVTSLASPPGSASL-DSSPGTELPVPSLA-- 86
+R P+ S+ PRSR N A+L TS +P S SL DSSP PSL
Sbjct: 65 SRSPSTKAPSIDEPRSR----NTSAKLPSSSTSSRTPSTSPSLHDSSPPPLSGQPSLQPP 120
Query: 87 ---------SSAPLAPTKPHPRPRVS-RLRLRTRAWA 113
S P P +P P R S +++ AWA
Sbjct: 121 ASPQLPRSLDSRPPTPPEPDPGSRRSTKMQENPEAWA 157
>gi|13375756 occludin/ELL domain containing 1 [Homo sapiens]
Length = 264
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 65 SPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSR 104
+P GSAS + PG+EL A+ P P H PR +R
Sbjct: 3 NPDGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRRTR 42
>gi|169211554 PREDICTED: hypothetical protein [Homo sapiens]
Length = 115
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 66 PPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLR 108
PP SA+ D++P P PS +A A K P P ++ L L+
Sbjct: 59 PPLSAATDTAPSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQ 101
>gi|169211959 PREDICTED: hypothetical protein [Homo sapiens]
Length = 115
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 66 PPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLR 108
PP SA+ D++P P PS +A A K P P ++ L L+
Sbjct: 59 PPLSAATDTAPSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQ 101
>gi|169211178 PREDICTED: hypothetical protein [Homo sapiens]
Length = 115
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 66 PPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLR 108
PP SA+ D++P P PS +A A K P P ++ L L+
Sbjct: 59 PPLSAATDTAPSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQ 101
>gi|46195763 metastasis suppressor 1-like [Homo sapiens]
Length = 747
Score = 30.8 bits (68), Expect = 0.24
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
Query: 13 PSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARL---------GLLVTSL 63
PS+ S V + GP D+S IPR+ QN++ + GL L
Sbjct: 488 PSQGSDYDCYSVNGDADSEGPPEFDKSSTIPRNSNIAQNYRRLIQTKRPASTAGLPTAGL 547
Query: 64 --------ASPPGSASLDSSPGTELPVPSLASSAPLAPTKP 96
+PPG A++ +P T+ V SSA P +P
Sbjct: 548 PTATGLPSGAPPGVATIRRTPSTKPTVRRALSSAGPIPIRP 588
>gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens]
Length = 429
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 48 PPQNFQARLGLLVTSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVS 103
PPQNF + + VTS P + S ++PG+ L PSLA+S+ L + P+ +
Sbjct: 66 PPQNFSMSVTVPVTS----PNALSY-TNPGSSLVSPSLAASSTLTDSSMLSPPQTT 116
>gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens]
Length = 437
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 48 PPQNFQARLGLLVTSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVS 103
PPQNF + + VTS P + S ++PG+ L PSLA+S+ L + P+ +
Sbjct: 66 PPQNFSMSVTVPVTS----PNALSY-TNPGSSLVSPSLAASSTLTDSSMLSPPQTT 116
>gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]
Length = 497
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 48 PPQNFQARLGLLVTSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVS 103
PPQNF + + VTS P + S ++PG+ L PSLA+S+ L + P+ +
Sbjct: 134 PPQNFSMSVTVPVTS----PNALSY-TNPGSSLVSPSLAASSTLTDSSMLSPPQTT 184
>gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]
Length = 499
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 48 PPQNFQARLGLLVTSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVS 103
PPQNF + + VTS P + S ++PG+ L PSLA+S+ L + P+ +
Sbjct: 136 PPQNFSMSVTVPVTS----PNALSY-TNPGSSLVSPSLAASSTLTDSSMLSPPQTT 186
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,810,795
Number of Sequences: 37866
Number of extensions: 314034
Number of successful extensions: 2801
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 202
Number of HSP's that attempted gapping in prelim test: 2445
Number of HSP's gapped (non-prelim): 557
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.