Guide to the Human Genome
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Search of human proteins with 239746261

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746261 PREDICTED: hypothetical protein XP_002343718 [Homo
sapiens]
         (113 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757256 PREDICTED: hypothetical protein XP_002345223 [Homo ...   230   2e-61
gi|239751761 PREDICTED: hypothetical protein [Homo sapiens]           230   2e-61
gi|239746261 PREDICTED: hypothetical protein XP_002343718 [Homo ...   230   2e-61
gi|239757559 PREDICTED: hypothetical protein [Homo sapiens]            35   0.017
gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens]          33   0.064
gi|102469037 jun D proto-oncogene [Homo sapiens]                       32   0.083
gi|7661864 USP6 N-terminal like isoform 1 [Homo sapiens]               32   0.11 
gi|122937432 USP6 N-terminal like isoform 2 [Homo sapiens]             32   0.11 
gi|46397390 pogo transposable element with ZNF domain isoform 1 ...    32   0.11 
gi|46397394 pogo transposable element with ZNF domain isoform 2 ...    32   0.11 
gi|239743834 PREDICTED: similar to Putative uncharacterized prot...    32   0.11 
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    32   0.11 
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho...    32   0.11 
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho...    32   0.11 
gi|22035600 mitogen-activated protein kinase kinase kinase kinas...    32   0.14 
gi|28875786 FCH and double SH3 domains 1 [Homo sapiens]                32   0.14 
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom...    31   0.19 
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom...    31   0.19 
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap...    31   0.19 
gi|50593110 5' nucleotidase, cytosolic IB isoform 1 [Homo sapiens]     31   0.19 
gi|50593108 5' nucleotidase, cytosolic IB isoform 2 [Homo sapiens]     31   0.19 
gi|13375756 occludin/ELL domain containing 1 [Homo sapiens]            31   0.19 
gi|169211554 PREDICTED: hypothetical protein [Homo sapiens]            31   0.24 
gi|169211959 PREDICTED: hypothetical protein [Homo sapiens]            31   0.24 
gi|169211178 PREDICTED: hypothetical protein [Homo sapiens]            31   0.24 
gi|46195763 metastasis suppressor 1-like [Homo sapiens]                31   0.24 
gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens]       30   0.32 
gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens]       30   0.32 
gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]       30   0.32 
gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]       30   0.32 

>gi|239757256 PREDICTED: hypothetical protein XP_002345223 [Homo
           sapiens]
          Length = 113

 Score =  230 bits (587), Expect = 2e-61
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MALPRDQNGQNPPSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARLGLLV 60
           MALPRDQNGQNPPSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARLGLLV
Sbjct: 1   MALPRDQNGQNPPSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARLGLLV 60

Query: 61  TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLRTRAWA 113
           TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLRTRAWA
Sbjct: 61  TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLRTRAWA 113


>gi|239751761 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 113

 Score =  230 bits (587), Expect = 2e-61
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MALPRDQNGQNPPSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARLGLLV 60
           MALPRDQNGQNPPSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARLGLLV
Sbjct: 1   MALPRDQNGQNPPSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARLGLLV 60

Query: 61  TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLRTRAWA 113
           TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLRTRAWA
Sbjct: 61  TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLRTRAWA 113


>gi|239746261 PREDICTED: hypothetical protein XP_002343718 [Homo
           sapiens]
          Length = 113

 Score =  230 bits (587), Expect = 2e-61
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MALPRDQNGQNPPSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARLGLLV 60
           MALPRDQNGQNPPSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARLGLLV
Sbjct: 1   MALPRDQNGQNPPSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARLGLLV 60

Query: 61  TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLRTRAWA 113
           TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLRTRAWA
Sbjct: 61  TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLRTRAWA 113


>gi|239757559 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 196

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 56  LGLLVTSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRP 100
           LG     LA+PPG+ +     G   P P+   +APLAP  PH  P
Sbjct: 143 LGTRERPLAAPPGNCARSRREGPSRPAPT--GAAPLAPPAPHAPP 185


>gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens]
          Length = 398

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 18/98 (18%)

Query: 4   PRDQNGQN--PPSRSSLRVTLKVTPMDHARGPARTDRS-VWIPRSRFPPQNFQARLGLLV 60
           P +  G +  PP++   R   +   +   R P R   S VW P S+              
Sbjct: 105 PSESTGSSTAPPTKRHCRSLSEPEELVRCRSPWRPGSSKVWTPVSK-------------- 150

Query: 61  TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHP 98
                  GSA+   SPG  LP  ++ S+ P +P  P P
Sbjct: 151 -RRCDSGGSATRQGSPGAVLPRSAVWSTGPTSPATPRP 187


>gi|102469037 jun D proto-oncogene [Homo sapiens]
          Length = 347

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 47  FPPQNFQARLGLLVTSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRV--SR 104
           FPP      LG        PP  A+L   P T   VPS   S PL+P     + R+   R
Sbjct: 222 FPPPPPPGALG--------PPRLAALKDEPQTVPDVPSFGESPPLSPIDMDTQERIKAER 273

Query: 105 LRLRTR 110
            RLR R
Sbjct: 274 KRLRNR 279


>gi|7661864 USP6 N-terminal like isoform 1 [Homo sapiens]
          Length = 828

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 9/95 (9%)

Query: 13  PSRSSLRVTLKVTPMDHARGPARTD---RSVWIPRSRFPPQ----NFQARLGLLVTSLAS 65
           PS+ S + T KV P  HAR P++ D   R +  P S   P     N         +S AS
Sbjct: 596 PSKVSNKFTFKVQPPSHARYPSQLDGEARGLAHPPSYSNPPVYHGNSPKHFPTANSSFAS 655

Query: 66  PPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRP 100
           P  S     +P       +L+ SA  +P K + RP
Sbjct: 656 PQFSPGTQLNPSRRPHGSTLSVSA--SPEKSYSRP 688


>gi|122937432 USP6 N-terminal like isoform 2 [Homo sapiens]
          Length = 845

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 9/95 (9%)

Query: 13  PSRSSLRVTLKVTPMDHARGPARTD---RSVWIPRSRFPPQ----NFQARLGLLVTSLAS 65
           PS+ S + T KV P  HAR P++ D   R +  P S   P     N         +S AS
Sbjct: 613 PSKVSNKFTFKVQPPSHARYPSQLDGEARGLAHPPSYSNPPVYHGNSPKHFPTANSSFAS 672

Query: 66  PPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRP 100
           P  S     +P       +L+ SA  +P K + RP
Sbjct: 673 PQFSPGTQLNPSRRPHGSTLSVSA--SPEKSYSRP 705


>gi|46397390 pogo transposable element with ZNF domain isoform 1
           [Homo sapiens]
          Length = 1410

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 11  NPPSRSSLRVTLKVTPMDHAR-GPART---DRSVWIPRSRFPPQNFQARLGLLVTSLASP 66
           NP  RSS  +   +T + H+R G  R    DR+V   ++ +PP +F       V S  + 
Sbjct: 837 NPSHRSSSILPRGLTWIAHSRHGQTRDRVHDRNV---KNMYPPPSFPTNKAATVKSAGAT 893

Query: 67  PGSASLDSSPGTELPVPSLASSAPLAPTKPHPR 99
           P       +P     +PS AS+A   PT  HP+
Sbjct: 894 PAEPEELLTPLAPA-LPSPASTATPPPTPTHPQ 925


>gi|46397394 pogo transposable element with ZNF domain isoform 2
           [Homo sapiens]
          Length = 1357

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 11  NPPSRSSLRVTLKVTPMDHAR-GPART---DRSVWIPRSRFPPQNFQARLGLLVTSLASP 66
           NP  RSS  +   +T + H+R G  R    DR+V   ++ +PP +F       V S  + 
Sbjct: 784 NPSHRSSSILPRGLTWIAHSRHGQTRDRVHDRNV---KNMYPPPSFPTNKAATVKSAGAT 840

Query: 67  PGSASLDSSPGTELPVPSLASSAPLAPTKPHPR 99
           P       +P     +PS AS+A   PT  HP+
Sbjct: 841 PAEPEELLTPLAPA-LPSPASTATPPPTPTHPQ 872


>gi|239743834 PREDICTED: similar to Putative uncharacterized
          protein C21orf15 [Homo sapiens]
          Length = 109

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 61 TSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHP 98
          TSL+ PPG      + GT LP P+   + P  P  P P
Sbjct: 22 TSLSHPPGQRPNSLTAGTSLPYPAGQQALPPTPLLPSP 59


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
           sapiens]
          Length = 1751

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 15/36 (41%), Positives = 17/36 (47%)

Query: 64  ASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPR 99
           A PPGS  L   PG   PV  L  + P   T P P+
Sbjct: 769 AGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQ 804


>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1336

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 15/36 (41%), Positives = 17/36 (47%)

Query: 64  ASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPR 99
           A PPGS  L   PG   PV  L  + P   T P P+
Sbjct: 354 AGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQ 389


>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1516

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 15/36 (41%), Positives = 17/36 (47%)

Query: 64  ASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPR 99
           A PPGS  L   PG   PV  L  + P   T P P+
Sbjct: 534 AGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQ 569


>gi|22035600 mitogen-activated protein kinase kinase kinase kinase 2
           [Homo sapiens]
          Length = 820

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 66  PPGSASLDSSPGTELPVPSLASSAPLAPT 94
           PP    L S PGT  P PS  +S+PL PT
Sbjct: 415 PPAEEPLSSPPGTLPPPPSGPNSSPLLPT 443


>gi|28875786 FCH and double SH3 domains 1 [Homo sapiens]
          Length = 690

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 22/47 (46%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 52  FQARLG----LLVTSLASPPGSASLDSSPGTELPVPSLASSAPLAPT 94
           F  R+G    LLV  L  PPG   L S P   LP PS  S +P APT
Sbjct: 592 FGGRVGVFPSLLVEELLGPPGPPEL-SDPEQMLPSPSPPSFSPPAPT 637


>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
           sapiens]
          Length = 1188

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 63  LASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRV 102
           ++ PPG + L S P T  P P L    P  P+   P P V
Sbjct: 154 ISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPPV 193



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 60  VTSLASPP---GSASLDSSPGTELPVPSLASSAPLAPTKPHPRP 100
           V    SPP    S S+ + P    P P LA  AP  P  P P P
Sbjct: 193 VLEALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPPPVPAPAP 236


>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
           sapiens]
          Length = 1188

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 63  LASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRV 102
           ++ PPG + L S P T  P P L    P  P+   P P V
Sbjct: 154 ISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPPV 193



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 60  VTSLASPP---GSASLDSSPGTELPVPSLASSAPLAPTKPHPRP 100
           V    SPP    S S+ + P    P P LA  AP  P  P P P
Sbjct: 193 VLEALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPPPVPAPAP 236


>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
           sapiens]
          Length = 1188

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 63  LASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRV 102
           ++ PPG + L S P T  P P L    P  P+   P P V
Sbjct: 154 ISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPPV 193



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 60  VTSLASPP---GSASLDSSPGTELPVPSLASSAPLAPTKPHPRP 100
           V    SPP    S S+ + P    P P LA  AP  P  P P P
Sbjct: 193 VLEALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPPPVPAPAP 236


>gi|50593110 5' nucleotidase, cytosolic IB isoform 1 [Homo sapiens]
          Length = 610

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 17/97 (17%)

Query: 30  ARGPARTDRSVWIPRSRFPPQNFQARLGLLVTSLASPPGSASL-DSSPGTELPVPSLA-- 86
           +R P+    S+  PRSR    N  A+L    TS  +P  S SL DSSP      PSL   
Sbjct: 125 SRSPSTKAPSIDEPRSR----NTSAKLPSSSTSSRTPSTSPSLHDSSPPPLSGQPSLQPP 180

Query: 87  ---------SSAPLAPTKPHPRPRVS-RLRLRTRAWA 113
                     S P  P +P P  R S +++    AWA
Sbjct: 181 ASPQLPRSLDSRPPTPPEPDPGSRRSTKMQENPEAWA 217


>gi|50593108 5' nucleotidase, cytosolic IB isoform 2 [Homo sapiens]
          Length = 550

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 17/97 (17%)

Query: 30  ARGPARTDRSVWIPRSRFPPQNFQARLGLLVTSLASPPGSASL-DSSPGTELPVPSLA-- 86
           +R P+    S+  PRSR    N  A+L    TS  +P  S SL DSSP      PSL   
Sbjct: 65  SRSPSTKAPSIDEPRSR----NTSAKLPSSSTSSRTPSTSPSLHDSSPPPLSGQPSLQPP 120

Query: 87  ---------SSAPLAPTKPHPRPRVS-RLRLRTRAWA 113
                     S P  P +P P  R S +++    AWA
Sbjct: 121 ASPQLPRSLDSRPPTPPEPDPGSRRSTKMQENPEAWA 157


>gi|13375756 occludin/ELL domain containing 1 [Homo sapiens]
          Length = 264

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 65  SPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSR 104
           +P GSAS  + PG+EL     A+  P  P   H  PR +R
Sbjct: 3   NPDGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRRTR 42


>gi|169211554 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 115

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 66  PPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLR 108
           PP SA+ D++P    P PS   +A  A  K  P P ++ L L+
Sbjct: 59  PPLSAATDTAPSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQ 101


>gi|169211959 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 115

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 66  PPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLR 108
           PP SA+ D++P    P PS   +A  A  K  P P ++ L L+
Sbjct: 59  PPLSAATDTAPSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQ 101


>gi|169211178 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 115

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 66  PPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLR 108
           PP SA+ D++P    P PS   +A  A  K  P P ++ L L+
Sbjct: 59  PPLSAATDTAPSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQ 101


>gi|46195763 metastasis suppressor 1-like [Homo sapiens]
          Length = 747

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 17/101 (16%)

Query: 13  PSRSSLRVTLKVTPMDHARGPARTDRSVWIPRSRFPPQNFQARL---------GLLVTSL 63
           PS+ S      V     + GP   D+S  IPR+    QN++  +         GL    L
Sbjct: 488 PSQGSDYDCYSVNGDADSEGPPEFDKSSTIPRNSNIAQNYRRLIQTKRPASTAGLPTAGL 547

Query: 64  --------ASPPGSASLDSSPGTELPVPSLASSAPLAPTKP 96
                    +PPG A++  +P T+  V    SSA   P +P
Sbjct: 548 PTATGLPSGAPPGVATIRRTPSTKPTVRRALSSAGPIPIRP 588


>gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens]
          Length = 429

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 48  PPQNFQARLGLLVTSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVS 103
           PPQNF   + + VTS    P + S  ++PG+ L  PSLA+S+ L  +     P+ +
Sbjct: 66  PPQNFSMSVTVPVTS----PNALSY-TNPGSSLVSPSLAASSTLTDSSMLSPPQTT 116


>gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens]
          Length = 437

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 48  PPQNFQARLGLLVTSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVS 103
           PPQNF   + + VTS    P + S  ++PG+ L  PSLA+S+ L  +     P+ +
Sbjct: 66  PPQNFSMSVTVPVTS----PNALSY-TNPGSSLVSPSLAASSTLTDSSMLSPPQTT 116


>gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]
          Length = 497

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 48  PPQNFQARLGLLVTSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVS 103
           PPQNF   + + VTS    P + S  ++PG+ L  PSLA+S+ L  +     P+ +
Sbjct: 134 PPQNFSMSVTVPVTS----PNALSY-TNPGSSLVSPSLAASSTLTDSSMLSPPQTT 184


>gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]
          Length = 499

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 48  PPQNFQARLGLLVTSLASPPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVS 103
           PPQNF   + + VTS    P + S  ++PG+ L  PSLA+S+ L  +     P+ +
Sbjct: 136 PPQNFSMSVTVPVTS----PNALSY-TNPGSSLVSPSLAASSTLTDSSMLSPPQTT 186


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.130    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,810,795
Number of Sequences: 37866
Number of extensions: 314034
Number of successful extensions: 2801
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 202
Number of HSP's that attempted gapping in prelim test: 2445
Number of HSP's gapped (non-prelim): 557
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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