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Search of human proteins with 239746208
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746208 PREDICTED: hypothetical protein XP_002343676 [Homo
sapiens]
(139 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751704 PREDICTED: hypothetical protein [Homo sapiens] 303 4e-83
gi|239746208 PREDICTED: hypothetical protein XP_002343676 [Homo ... 303 4e-83
gi|239757197 PREDICTED: hypothetical protein XP_002345198 [Homo ... 301 1e-82
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 31 0.28
gi|148727255 microtubule associated serine/threonine kinase fami... 30 0.83
gi|62526026 cutA divalent cation tolerance homolog isoform 3 [Ho... 28 1.8
gi|253795481 plexin B3 isoform 2 [Homo sapiens] 28 2.4
gi|239743317 PREDICTED: hypothetical protein XP_002342791 [Homo ... 27 4.1
gi|239508999 PREDICTED: hypothetical protein [Homo sapiens] 27 4.1
gi|46409372 G protein-coupled receptor 153 [Homo sapiens] 27 4.1
gi|31581524 cordon-bleu homolog [Homo sapiens] 27 5.4
gi|14249622 ajuba isoform 1 [Homo sapiens] 27 5.4
gi|31652264 RNA binding motif protein 26 [Homo sapiens] 27 5.4
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 27 5.4
gi|240120161 G protein-coupled receptor 144 [Homo sapiens] 27 7.0
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 27 7.0
gi|239741514 PREDICTED: hypothetical protein [Homo sapiens] 27 7.0
gi|81174549 hypothetical protein LOC84792 [Homo sapiens] 27 7.0
gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo ... 26 9.1
gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo... 26 9.1
gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo... 26 9.1
gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo ... 26 9.1
gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo ... 26 9.1
gi|4809279 annexin VII isoform 2 [Homo sapiens] 26 9.1
gi|31881693 butyrophilin, subfamily 2, member A2 isoform b [Homo... 26 9.1
>gi|239751704 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 303 bits (775), Expect = 4e-83
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MQVLHGHQFSNQWDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDRTS 60
MQVLHGHQFSNQWDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDRTS
Sbjct: 1 MQVLHGHQFSNQWDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDRTS 60
Query: 61 SRHLVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQGLQ 120
SRHLVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQGLQ
Sbjct: 61 SRHLVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQGLQ 120
Query: 121 PGRHSVYCASCSLGLESFW 139
PGRHSVYCASCSLGLESFW
Sbjct: 121 PGRHSVYCASCSLGLESFW 139
>gi|239746208 PREDICTED: hypothetical protein XP_002343676 [Homo
sapiens]
Length = 139
Score = 303 bits (775), Expect = 4e-83
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MQVLHGHQFSNQWDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDRTS 60
MQVLHGHQFSNQWDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDRTS
Sbjct: 1 MQVLHGHQFSNQWDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDRTS 60
Query: 61 SRHLVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQGLQ 120
SRHLVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQGLQ
Sbjct: 61 SRHLVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQGLQ 120
Query: 121 PGRHSVYCASCSLGLESFW 139
PGRHSVYCASCSLGLESFW
Sbjct: 121 PGRHSVYCASCSLGLESFW 139
>gi|239757197 PREDICTED: hypothetical protein XP_002345198 [Homo
sapiens]
Length = 139
Score = 301 bits (770), Expect = 1e-82
Identities = 138/139 (99%), Positives = 138/139 (99%)
Query: 1 MQVLHGHQFSNQWDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDRTS 60
MQVLHGHQFSNQWDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRD TS
Sbjct: 1 MQVLHGHQFSNQWDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDHTS 60
Query: 61 SRHLVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQGLQ 120
SRHLVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQGLQ
Sbjct: 61 SRHLVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQGLQ 120
Query: 121 PGRHSVYCASCSLGLESFW 139
PGRHSVYCASCSLGLESFW
Sbjct: 121 PGRHSVYCASCSLGLESFW 139
>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase
4 [Homo sapiens]
Length = 1039
Score = 31.2 bits (69), Expect = 0.28
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 26 ESTEFRAEPPNGFPKGLCPVA-------FPPGRDKGPRDRTSSRHLVSSVWLGKAPEPLI 78
E TE A PP P+ P A P PRD + RH + W +A PL
Sbjct: 448 EPTE--AAPPRSGPQSPAPAAPAQPGATLAPPTPPRPRDGGTPRHSRALSWAARAARPLP 505
Query: 79 L-----PPSRRLLNFPP 90
L PP R + PP
Sbjct: 506 LFLGRAPPPRPAVEQPP 522
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 29.6 bits (65), Expect = 0.83
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 35 PNGFPKGLCPVAFPPGRDKGPRDRTSSRHLV-SSVWLGKAP--EPLILPPSRRLLNFP 89
P+G + P P K D TS+R L SS+ + K+ EP LPPSR L N P
Sbjct: 1642 PSGDVRASVPPVLPSSSGK-KNDTTSARELSPSSLKMNKSYLLEPWFLPPSRGLQNSP 1698
>gi|62526026 cutA divalent cation tolerance homolog isoform 3 [Homo
sapiens]
Length = 179
Score = 28.5 bits (62), Expect = 1.8
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 18/72 (25%)
Query: 64 LVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQA----QGL 119
L+S VW+ P +LP + RLL P L+ + GS PT PS A G
Sbjct: 18 LLSFVWM-----PALLPVASRLLLLPRVLLTM---------ASGSPPTQPSPASDSGSGY 63
Query: 120 QPGRHSVYCASC 131
PG S +C
Sbjct: 64 VPGSVSAAFVTC 75
>gi|253795481 plexin B3 isoform 2 [Homo sapiens]
Length = 1932
Score = 28.1 bits (61), Expect = 2.4
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 66 SSVWLGKAPEPLILPPSRRLLNFPPFLMILFIA---LCLLGSHLGSGPTYPSQAQGLQPG 122
S WL KAP PP F L++L ++ L L G+H S P L PG
Sbjct: 32 SRPWLPKAPVMARWPP------FGLCLLLLLLSPPPLPLTGAHRFSAPNTTLNHLALAPG 85
Query: 123 RHSVY 127
R ++Y
Sbjct: 86 RGTLY 90
>gi|239743317 PREDICTED: hypothetical protein XP_002342791 [Homo
sapiens]
Length = 117
Score = 27.3 bits (59), Expect = 4.1
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 49 PGRDKGPRD--RTSSR-HLVSSVWLGKAPEP 76
PG+ +GP+ R S+R HL + WLGK +P
Sbjct: 10 PGQAEGPQSPIRASARSHLSCTAWLGKPSKP 40
>gi|239508999 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 27.3 bits (59), Expect = 4.1
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 49 PGRDKGPRD--RTSSR-HLVSSVWLGKAPEP 76
PG+ +GP+ R S+R HL + WLGK +P
Sbjct: 10 PGQAEGPQSPIRASARSHLSCTAWLGKPSKP 40
>gi|46409372 G protein-coupled receptor 153 [Homo sapiens]
Length = 609
Score = 27.3 bits (59), Expect = 4.1
Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 21/102 (20%)
Query: 48 PPG---RDKGPRDRTSSRHLVSSVWLGKA----PEPLILPPSRRLLNFPPFLMILFIALC 100
PPG R GP R++S L+ + A P+ L PP FP
Sbjct: 479 PPGSPRRRPGPGPRSASASLLPDAFALTAFECEPQALRRPPGP----FPA------APAA 528
Query: 101 LLGSHLGSGPTYPSQAQ---GLQPGRHSVYCASCSLGLESFW 139
G+ G PT PS AQ G +P HS + S GL + W
Sbjct: 529 PDGADPGEAPTPPSSAQRSPGPRPSAHS-HAGSLRPGLSASW 569
>gi|31581524 cordon-bleu homolog [Homo sapiens]
Length = 1261
Score = 26.9 bits (58), Expect = 5.4
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 35 PNGFPK----GLCPV-AFPPGRDKGPRDRTSSRHLVSSVWLGKAPEPLILPPS 82
P+G+ + G PV A PP K DRTSS H + W A P + PP+
Sbjct: 888 PHGYAEKGYAGKAPVLAAPPVTVKD--DRTSSPHSETQGWKDGAQWPCVTPPN 938
>gi|14249622 ajuba isoform 1 [Homo sapiens]
Length = 538
Score = 26.9 bits (58), Expect = 5.4
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 107 GSGPTYPSQAQGLQPGRHSVY-CASCSLG 134
G G P + +G QPGRHSV C++G
Sbjct: 245 GVGAAGPLERRGAQPGRHSVTGYGDCAVG 273
>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
Length = 980
Score = 26.9 bits (58), Expect = 5.4
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 11/58 (18%)
Query: 34 PPNGFPKGLCPVAFPP---------GRDKGPRDRTSSRHLVSSVWLGKAPEPLILPPS 82
PP P L PV PP G D P TSS V + + P P PPS
Sbjct: 366 PPGPLPPSLPPVTGPPPPLPPLQPSGMDAPPNSATSSVPTVVTTGIHHQPPP--APPS 421
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 26.9 bits (58), Expect = 5.4
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 31 RAEPPNGFPKGLCPVAFPPGRDKGPRDRTSSRHLVSSVWLGKAPEPLILPPSRRLLNFPP 90
+A P P GL P P D P +SS + G AP P PP LN P
Sbjct: 173 QAFPTLAGPGGLFP---PRLADPVPSGGSSSPRFLPR---GNAPSPAPPPPPAISLNAPS 226
Query: 91 FLMILFIALCLLGSHLGSGP 110
+ + L+ S LGS P
Sbjct: 227 YNWGAALRSSLVPSDLGSPP 246
>gi|240120161 G protein-coupled receptor 144 [Homo sapiens]
Length = 963
Score = 26.6 bits (57), Expect = 7.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 55 PRDRTSSRHLVSSVWLGKAPEPLILPPSRR 84
P D + L VW+G+ PL PP RR
Sbjct: 84 PPDGVLASRLRDPVWVGQREAPLRRPPQRR 113
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 26.6 bits (57), Expect = 7.0
Identities = 28/86 (32%), Positives = 33/86 (38%), Gaps = 17/86 (19%)
Query: 31 RAEPPNGFPKGLCPVAFPPG-RDKGPRDRTSSRHLVSSVWLGKA------PEPLILPPSR 83
R PP G P CP PG R P + + GKA P P R
Sbjct: 112 RPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPA---GKAAADRGRPGPAAGRRVR 168
Query: 84 RLLNFPPFLMILF-------IALCLL 102
R +FPPFL+ +ALCLL
Sbjct: 169 RSPSFPPFLLAQTRLGRTGPLALCLL 194
>gi|239741514 PREDICTED: hypothetical protein [Homo sapiens]
Length = 390
Score = 26.6 bits (57), Expect = 7.0
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 13 WDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDRTSSRHLVSSVWLGK 72
W Q L I W W + + P+ G +P + P D S +VS W
Sbjct: 197 WTQCLPISWRHWSAHSFLK---PSSRGPGQAS-RWPLQDELLPSDGISRPQMVSGRW--- 249
Query: 73 APE-----PLILPPSRRLL 86
AP PL+ PPS+RLL
Sbjct: 250 APPCHCCMPLLGPPSQRLL 268
>gi|81174549 hypothetical protein LOC84792 [Homo sapiens]
Length = 259
Score = 26.6 bits (57), Expect = 7.0
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 26 ESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDRTSSRHLVSSVWLGKAPEPLILPPSRRL 85
E F+ +PP+ FPKGL G + H + S L PE L+ ++R+
Sbjct: 163 EMGSFQDDPPSAFPKGL-----------GSELEPACLHSILSATLHVYPEVLLSEETKRI 211
>gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo
sapiens]
Length = 571
Score = 26.2 bits (56), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 55 PRDRTSSRHLVSSVWLGKAPEPLILPP 81
PR RTS L++ V G++ P I PP
Sbjct: 351 PRTRTSQEELLAEVVQGQSRTPRISPP 377
>gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo
sapiens]
Length = 730
Score = 26.2 bits (56), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 55 PRDRTSSRHLVSSVWLGKAPEPLILPP 81
PR RTS L++ V G++ P I PP
Sbjct: 385 PRTRTSQEELLAEVVQGQSRTPRISPP 411
>gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo
sapiens]
Length = 735
Score = 26.2 bits (56), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 55 PRDRTSSRHLVSSVWLGKAPEPLILPP 81
PR RTS L++ V G++ P I PP
Sbjct: 385 PRTRTSQEELLAEVVQGQSRTPRISPP 411
>gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo
sapiens]
Length = 579
Score = 26.2 bits (56), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 55 PRDRTSSRHLVSSVWLGKAPEPLILPP 81
PR RTS L++ V G++ P I PP
Sbjct: 385 PRTRTSQEELLAEVVQGQSRTPRISPP 411
>gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo
sapiens]
Length = 736
Score = 26.2 bits (56), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 55 PRDRTSSRHLVSSVWLGKAPEPLILPP 81
PR RTS L++ V G++ P I PP
Sbjct: 385 PRTRTSQEELLAEVVQGQSRTPRISPP 411
>gi|4809279 annexin VII isoform 2 [Homo sapiens]
Length = 488
Score = 26.2 bits (56), Expect = 9.1
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 35 PNGFPKGLCPVAFPPGRDKGP----RDRTSSRHLVSSVWLGKAPEP 76
P GFP G P +P G+ P D SS + S V L + EP
Sbjct: 123 PGGFPGGQMPSQYPGGQPTYPSQINTDSFSSYPVFSPVSLDYSSEP 168
>gi|31881693 butyrophilin, subfamily 2, member A2 isoform b [Homo
sapiens]
Length = 407
Score = 26.2 bits (56), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 79 LPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQ 117
LP S LL L++L ++LC L S LGS P +AQ
Sbjct: 11 LPASLLLL-----LLLLLLSLCALVSGLGSKPLIEIKAQ 44
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.141 0.485
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,471,122
Number of Sequences: 37866
Number of extensions: 395921
Number of successful extensions: 896
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 26
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.