Guide to the Human Genome
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Name: LOC100287160 Sequence: fasta or formatted (139aa) NCBI GI: 239751704
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {139aa} PREDICTED: hypothetical protein XP_002343676
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3          6           1
 C cysteine            2.9          4           1
 D aspartate           2.9          4           1
 E glutamate           3.6          5           1
 F phenylalanine       6.5          9           1
 G glycine             8.6         12           1
 H histidine           4.3          6           1
 I isoleucine          2.9          4           1
 K lysine              2.2          3           1
 L leucine            12.9         18           2
 M methionine          2.2          3           1
 N asparagine          2.2          3           1
 P proline            11.5         16           2
 Q glutamine           5.0          7           1
 R arginine            6.5          9           2
 S serine             10.8         15           2
 T threonine           2.2          3           1
 V valine              3.6          5           1
 W tryptophan          3.6          5           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287160          1.000   PREDICTED: hypothetical protein XP_002343676 
LOC100291973          0.993   PREDICTED: hypothetical protein XP_002345198 
B4GALNT4              0.022   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
MAST4                 0.018   microtubule associated serine/threonine kinase fami...
CUTA                  0.011   cutA divalent cation tolerance homolog isoform 3 [Ho...
PLXNB3                0.011   plexin B3 isoform 2 
LOC100287006          0.007   PREDICTED: hypothetical protein XP_002342791 
LOC100287006          0.007   PREDICTED: hypothetical protein 
GPR153                0.007   G protein-coupled receptor 153 
COBL                  0.007   cordon-bleu homolog 
JUB                   0.007   ajuba isoform 1 
RBM26                 0.007   RNA binding motif protein 26 
MBD6                  0.007   methyl-CpG binding domain protein 6 
GPR144                0.007   G protein-coupled receptor 144 
LOC646509             0.007   PREDICTED: hypothetical protein 
LOC731275             0.007   PREDICTED: hypothetical protein 
C7orf70               0.007   hypothetical protein LOC84792 
ZC3H14                0.004   zinc finger CCCH-type containing 14 isoform 3 
ZC3H14                0.004   zinc finger CCCH-type containing 14 isoform 6 [Homo...
ZC3H14                0.004   zinc finger CCCH-type containing 14 isoform 5 [Homo...
ZC3H14                0.004   zinc finger CCCH-type containing 14 isoform 2 
ZC3H14                0.004   zinc finger CCCH-type containing 14 isoform 1 
ANXA7                 0.004   annexin VII isoform 2 
BTN2A2                0.004   butyrophilin, subfamily 2, member A2 isoform b [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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