Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239746193

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746193 PREDICTED: hypothetical protein XP_002343660 [Homo
sapiens]
         (280 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757179 PREDICTED: hypothetical protein [Homo sapiens]           579   e-166
gi|239751689 PREDICTED: hypothetical protein XP_002347966 [Homo ...   579   e-166
gi|239746193 PREDICTED: hypothetical protein XP_002343660 [Homo ...   579   e-166
gi|110611172 amnionless protein precursor [Homo sapiens]               37   0.015
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]    37   0.025
gi|239750468 PREDICTED: similar to Os05g0242100 [Homo sapiens]         33   0.36 
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ...    33   0.36 
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ...    33   0.36 
gi|4885455 SH2B adaptor protein 3 [Homo sapiens]                       32   0.47 
gi|239753180 PREDICTED: hypothetical protein [Homo sapiens]            32   0.47 
gi|239747754 PREDICTED: hypothetical protein XP_002348260 [Homo ...    32   0.47 
gi|239741620 PREDICTED: hypothetical protein XP_002342250 [Homo ...    32   0.47 
gi|169167405 PREDICTED: hypothetical protein [Homo sapiens]            32   0.62 
gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]                32   0.62 
gi|239755298 PREDICTED: hypothetical protein [Homo sapiens]            31   1.1  
gi|239749793 PREDICTED: hypothetical protein XP_002347163 [Homo ...    31   1.1  
gi|239744053 PREDICTED: hypothetical protein XP_002343026 [Homo ...    31   1.1  
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ...    31   1.4  
gi|239753095 PREDICTED: similar to hCG1725380 [Homo sapiens]           31   1.4  
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ...    31   1.4  
gi|239747658 PREDICTED: similar to hCG1725380 [Homo sapiens]           31   1.4  
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ...    31   1.4  
gi|239741529 PREDICTED: similar to hCG1725380 [Homo sapiens]           31   1.4  
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               31   1.4  
gi|148727368 bromodomain and PHD finger containing, 3 [Homo sapi...    31   1.4  
gi|210147462 von Willebrand factor A domain containing 5B1 [Homo...    31   1.4  
gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens]         30   1.8  
gi|153285461 fibroblast growth factor 2 [Homo sapiens]                 30   2.4  
gi|169215211 PREDICTED: hypothetical protein [Homo sapiens]            30   2.4  
gi|239755661 PREDICTED: hypothetical protein [Homo sapiens]            30   2.4  

>gi|239757179 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 280

 Score =  579 bits (1493), Expect = e-166
 Identities = 280/280 (100%), Positives = 280/280 (100%)

Query: 1   MIACSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP 60
           MIACSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP
Sbjct: 1   MIACSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP 60

Query: 61  LTSFKKTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRL 120
           LTSFKKTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRL
Sbjct: 61  LTSFKKTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRL 120

Query: 121 AGYHVLVLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLKRPGVRAAEG 180
           AGYHVLVLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLKRPGVRAAEG
Sbjct: 121 AGYHVLVLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLKRPGVRAAEG 180

Query: 181 WTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPSVGE 240
           WTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPSVGE
Sbjct: 181 WTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPSVGE 240

Query: 241 LDAPSVPTYCSTYRARCWGQGETQPVMPLQQGYGHSYSGL 280
           LDAPSVPTYCSTYRARCWGQGETQPVMPLQQGYGHSYSGL
Sbjct: 241 LDAPSVPTYCSTYRARCWGQGETQPVMPLQQGYGHSYSGL 280


>gi|239751689 PREDICTED: hypothetical protein XP_002347966 [Homo
           sapiens]
          Length = 280

 Score =  579 bits (1493), Expect = e-166
 Identities = 280/280 (100%), Positives = 280/280 (100%)

Query: 1   MIACSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP 60
           MIACSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP
Sbjct: 1   MIACSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP 60

Query: 61  LTSFKKTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRL 120
           LTSFKKTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRL
Sbjct: 61  LTSFKKTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRL 120

Query: 121 AGYHVLVLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLKRPGVRAAEG 180
           AGYHVLVLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLKRPGVRAAEG
Sbjct: 121 AGYHVLVLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLKRPGVRAAEG 180

Query: 181 WTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPSVGE 240
           WTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPSVGE
Sbjct: 181 WTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPSVGE 240

Query: 241 LDAPSVPTYCSTYRARCWGQGETQPVMPLQQGYGHSYSGL 280
           LDAPSVPTYCSTYRARCWGQGETQPVMPLQQGYGHSYSGL
Sbjct: 241 LDAPSVPTYCSTYRARCWGQGETQPVMPLQQGYGHSYSGL 280


>gi|239746193 PREDICTED: hypothetical protein XP_002343660 [Homo
           sapiens]
          Length = 280

 Score =  579 bits (1493), Expect = e-166
 Identities = 280/280 (100%), Positives = 280/280 (100%)

Query: 1   MIACSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP 60
           MIACSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP
Sbjct: 1   MIACSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP 60

Query: 61  LTSFKKTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRL 120
           LTSFKKTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRL
Sbjct: 61  LTSFKKTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRL 120

Query: 121 AGYHVLVLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLKRPGVRAAEG 180
           AGYHVLVLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLKRPGVRAAEG
Sbjct: 121 AGYHVLVLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLKRPGVRAAEG 180

Query: 181 WTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPSVGE 240
           WTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPSVGE
Sbjct: 181 WTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPSVGE 240

Query: 241 LDAPSVPTYCSTYRARCWGQGETQPVMPLQQGYGHSYSGL 280
           LDAPSVPTYCSTYRARCWGQGETQPVMPLQQGYGHSYSGL
Sbjct: 241 LDAPSVPTYCSTYRARCWGQGETQPVMPLQQGYGHSYSGL 280


>gi|110611172 amnionless protein precursor [Homo sapiens]
          Length = 453

 Score = 37.4 bits (85), Expect = 0.015
 Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 23/91 (25%)

Query: 86  GAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRLAGYHV-------------------- 125
           G   GG+GR  A A+L  VA +G+A+ V   T R +G HV                    
Sbjct: 315 GPETGGAGR-LARALLADVAENGEALGVLEATMRESGAHVWGSSAAGLAGGVAAAVLLAL 373

Query: 126 LVLLTHQPVLHQASRL--HRHIVLQPAAVPL 154
           LVLL   P+L +A RL   RH    PA  PL
Sbjct: 374 LVLLVAPPLLRRAGRLRWRRHEAAAPAGAPL 404


>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
          Length = 1603

 Score = 36.6 bits (83), Expect = 0.025
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 19   PQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMPLTSF-KKTAPTRP 72
            P  + A +SG    R TG R+PRG R    C+ +++RG       F  K  P  P
Sbjct: 1250 PTSASAAASGYPSKRSTGPRQPRGGRGGGACSAKKERGGAAAKAKFIPKPQPVNP 1304


>gi|239750468 PREDICTED: similar to Os05g0242100 [Homo sapiens]
          Length = 758

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 33/105 (31%), Positives = 39/105 (37%), Gaps = 16/105 (15%)

Query: 21  GSGAGSSGLAHSRPTGDREPRGRR---------------PALECAVRQQRGWEMPLTSFK 65
           G   GS G A  R  G R+ R RR                A   A RQ     MP    +
Sbjct: 41  GPTRGSQGSAPGRRRGRRQRRHRRGLRARRPQRHGGSGTAAHAGAARQVASGFMPHRRRR 100

Query: 66  KTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQA 110
           +TAP +P         R L G    GSGRGR  A++    G   A
Sbjct: 101 RTAPGQPWASGFRRQGRGLSGPG-AGSGRGRGGALIGRAGGGAMA 144


>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
           sapiens]
          Length = 647

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 36/106 (33%), Positives = 43/106 (40%), Gaps = 16/106 (15%)

Query: 5   SSASTSTRPCGGAEPQGSGAGSSGLAHSR--PTGDREPRGRRPALECAVRQQRGW-EMPL 61
           S  S + RPCG A P+   +G SG    R      R  RG  PA  C V   RG    P 
Sbjct: 273 SMPSAAARPCGAALPR---SGFSGRPRGRGGAAAGRGSRGEHPA--CGVGLARGTAPQPA 327

Query: 62  TSFKKTAPTRPRPRARLCSVRRLPG----AHEGGSGRGRAAAVLHA 103
           +++   A    RPRA      R       AH+ G  R R  A  HA
Sbjct: 328 STWALAA----RPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHA 369


>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
           sapiens]
          Length = 647

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 36/106 (33%), Positives = 43/106 (40%), Gaps = 16/106 (15%)

Query: 5   SSASTSTRPCGGAEPQGSGAGSSGLAHSR--PTGDREPRGRRPALECAVRQQRGW-EMPL 61
           S  S + RPCG A P+   +G SG    R      R  RG  PA  C V   RG    P 
Sbjct: 273 SMPSAAARPCGAALPR---SGFSGRPRGRGGAAAGRGSRGEHPA--CGVGLARGTAPQPA 327

Query: 62  TSFKKTAPTRPRPRARLCSVRRLPG----AHEGGSGRGRAAAVLHA 103
           +++   A    RPRA      R       AH+ G  R R  A  HA
Sbjct: 328 STWALAA----RPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHA 369


>gi|4885455 SH2B adaptor protein 3 [Homo sapiens]
          Length = 575

 Score = 32.3 bits (72), Expect = 0.47
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 178 AEGWTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPS 237
           AE      PG  A   P +R  E LA PR    CS  H RR+ LR  +  R+ G    P+
Sbjct: 100 AEASPEPGPGPAAPGLPKARSSEELAPPRPPGPCSFQHFRRS-LRHIFRRRSAG--ELPA 156

Query: 238 VGELDAPSVPTYCSTYRAR 256
                AP  P   +   AR
Sbjct: 157 AHTAAAPGTPGEAAETPAR 175


>gi|239753180 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 130

 Score = 32.3 bits (72), Expect = 0.47
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 2  IACSSASTSTRPCGGAEPQGSGA---GSSGLAHSRPTGDREPRGRRPALECA-VRQQRGW 57
          +AC + S          P+ SG    G       RPT  R P GR P   C+      G 
Sbjct: 1  MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT 60

Query: 58 EMPLTSFKKTA---PTRPRPRARLCSVRRL 84
            P +S ++ +   P+RPR +  L   R L
Sbjct: 61 CFPASSPRERSLPVPSRPRQKHHLAGSRSL 90


>gi|239747754 PREDICTED: hypothetical protein XP_002348260 [Homo
          sapiens]
          Length = 130

 Score = 32.3 bits (72), Expect = 0.47
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 2  IACSSASTSTRPCGGAEPQGSGA---GSSGLAHSRPTGDREPRGRRPALECA-VRQQRGW 57
          +AC + S          P+ SG    G       RPT  R P GR P   C+      G 
Sbjct: 1  MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT 60

Query: 58 EMPLTSFKKTA---PTRPRPRARLCSVRRL 84
            P +S ++ +   P+RPR +  L   R L
Sbjct: 61 CFPASSPRERSLPVPSRPRQKHHLAGSRSL 90


>gi|239741620 PREDICTED: hypothetical protein XP_002342250 [Homo
          sapiens]
          Length = 130

 Score = 32.3 bits (72), Expect = 0.47
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 2  IACSSASTSTRPCGGAEPQGSGA---GSSGLAHSRPTGDREPRGRRPALECA-VRQQRGW 57
          +AC + S          P+ SG    G       RPT  R P GR P   C+      G 
Sbjct: 1  MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT 60

Query: 58 EMPLTSFKKTA---PTRPRPRARLCSVRRL 84
            P +S ++ +   P+RPR +  L   R L
Sbjct: 61 CFPASSPRERSLPVPSRPRQKHHLAGSRSL 90


>gi|169167405 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 141

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 29/77 (37%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 13  PCGGAEPQ-GSGAGSS-GLAHSRPTGDREPRGRRPA-LECAVRQQRGWEMPLTSFKKTAP 69
           P GG  P  G+GAG   G A  RP    EPR  +   +  A   + G    LTS   + P
Sbjct: 32  PRGGESPDPGAGAGDRRGGARQRPQRLSEPRQPQAVPVPGAASYRLGLPPTLTSLSSSVP 91

Query: 70  TRPRPRARLCSVRRLPG 86
            R  P ARL +  R PG
Sbjct: 92  GRASPAARLRN--RRPG 106


>gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]
          Length = 397

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 7   ASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP 60
           A   T+  G  + QG G G  G    +  G  + +GRRP L  AV  +  W  P
Sbjct: 171 AEAQTQAEGQGQGQGQGQGQ-GQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSP 223


>gi|239755298 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 297

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 16  GAEPQGSGAGSSGLAHSRP-------TGDREPRGRRPALECAVRQQRGWEMPLTSFKKTA 68
           G  P+G+ A +  L    P       +G R+   R          QR    PL      A
Sbjct: 109 GVTPKGTNARACVLGKGGPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPAPLRPCAIPA 168

Query: 69  PTRPRPRARLCSVRRLPGAHEGG 91
           P RP   ARL S  R PGA   G
Sbjct: 169 PRRPAAAARLGSAARSPGAPPAG 191


>gi|239749793 PREDICTED: hypothetical protein XP_002347163 [Homo
           sapiens]
          Length = 250

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 16  GAEPQGSGAGSSGLAHSRP-------TGDREPRGRRPALECAVRQQRGWEMPLTSFKKTA 68
           G  P+G+ A +  L    P       +G R+   R          QR    PL      A
Sbjct: 62  GVTPKGTNARACVLGKGGPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPAPLRPCAIPA 121

Query: 69  PTRPRPRARLCSVRRLPGAHEGG 91
           P RP   ARL S  R PGA   G
Sbjct: 122 PRRPAAAARLGSAARSPGAPPAG 144


>gi|239744053 PREDICTED: hypothetical protein XP_002343026 [Homo
           sapiens]
          Length = 250

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 16  GAEPQGSGAGSSGLAHSRP-------TGDREPRGRRPALECAVRQQRGWEMPLTSFKKTA 68
           G  P+G+ A +  L    P       +G R+   R          QR    PL      A
Sbjct: 62  GVTPKGTNARACVLGKGGPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPAPLRPCAIPA 121

Query: 69  PTRPRPRARLCSVRRLPGAHEGG 91
           P RP   ARL S  R PGA   G
Sbjct: 122 PRRPAAAARLGSAARSPGAPPAG 144


>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
          sapiens]
          Length = 202

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 22/78 (28%)

Query: 11 TRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMPLTSFKKTAPT 70
          T P  GA+P GSG            GDR   G RP L  AV+++ G       FK  + T
Sbjct: 33 TEPGFGAQP-GSG------------GDRVCPGGRPRLLMAVKRRSG------GFKSHSAT 73

Query: 71 RPRPRARL---CSVRRLP 85
              R+RL   C  RRLP
Sbjct: 74 ERVERSRLARACYARRLP 91


>gi|239753095 PREDICTED: similar to hCG1725380 [Homo sapiens]
          Length = 583

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 14/65 (21%)

Query: 35 TGDREPRGRRPALECAVRQQRGWEMPLT----SFKKTAPTRPRPRARLCSVRRLPGAHEG 90
          + D  PR  RPAL     Q  GW   LT     F    P    PR +LC          G
Sbjct: 21 SADPRPRWTRPALSFPWPQDVGWAASLTRRPVRFCARLPPGASPRWQLC----------G 70

Query: 91 GSGRG 95
          G GRG
Sbjct: 71 GDGRG 75


>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
          sapiens]
          Length = 202

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 22/78 (28%)

Query: 11 TRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMPLTSFKKTAPT 70
          T P  GA+P GSG            GDR   G RP L  AV+++ G       FK  + T
Sbjct: 33 TEPGFGAQP-GSG------------GDRVCPGGRPRLLMAVKRRSG------GFKSHSAT 73

Query: 71 RPRPRARL---CSVRRLP 85
              R+RL   C  RRLP
Sbjct: 74 ERVERSRLARACYARRLP 91


>gi|239747658 PREDICTED: similar to hCG1725380 [Homo sapiens]
          Length = 583

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 14/65 (21%)

Query: 35 TGDREPRGRRPALECAVRQQRGWEMPLT----SFKKTAPTRPRPRARLCSVRRLPGAHEG 90
          + D  PR  RPAL     Q  GW   LT     F    P    PR +LC          G
Sbjct: 21 SADPRPRWTRPALSFPWPQDVGWAASLTRRPVRFCARLPPGASPRWQLC----------G 70

Query: 91 GSGRG 95
          G GRG
Sbjct: 71 GDGRG 75


>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
          sapiens]
          Length = 202

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 22/78 (28%)

Query: 11 TRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMPLTSFKKTAPT 70
          T P  GA+P GSG            GDR   G RP L  AV+++ G       FK  + T
Sbjct: 33 TEPGFGAQP-GSG------------GDRVCPGGRPRLLMAVKRRSG------GFKSHSAT 73

Query: 71 RPRPRARL---CSVRRLP 85
              R+RL   C  RRLP
Sbjct: 74 ERVERSRLARACYARRLP 91


>gi|239741529 PREDICTED: similar to hCG1725380 [Homo sapiens]
          Length = 583

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 14/65 (21%)

Query: 35 TGDREPRGRRPALECAVRQQRGWEMPLT----SFKKTAPTRPRPRARLCSVRRLPGAHEG 90
          + D  PR  RPAL     Q  GW   LT     F    P    PR +LC          G
Sbjct: 21 SADPRPRWTRPALSFPWPQDVGWAASLTRRPVRFCARLPPGASPRWQLC----------G 70

Query: 91 GSGRG 95
          G GRG
Sbjct: 71 GDGRG 75


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 7   ASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMPLTSFKK 66
           ++ STRP     P  SG  +   A + PT    P G +  +     ++ G   P +S +K
Sbjct: 497 STRSTRPPATMVPPTSGTSTPRTAPAVPTPGSAPTGSKKPIGSEASKKAG---PKSSPRK 553

Query: 67  TAPTRPRPRAR 77
             P RP   AR
Sbjct: 554 PVPLRPGKAAR 564


>gi|148727368 bromodomain and PHD finger containing, 3 [Homo sapiens]
          Length = 1205

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 3/99 (3%)

Query: 67   TAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRLAGYHVL 126
            T P R R +  L  V  L G +      G   ++L      G    +  +  +  GY   
Sbjct: 1031 TPPKRSRGKPALSRVPFLEGVNGDSDYNGSGRSLLLPFEDRGDLEPLELVWAKCRGYPSY 1090

Query: 127  VLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQ 165
              L   P + +   LH  +   P  VP L VL + EQ Q
Sbjct: 1091 PALIIDPKMPREGLLHNGV---PIPVPPLDVLKLGEQKQ 1126


>gi|210147462 von Willebrand factor A domain containing 5B1 [Homo
           sapiens]
          Length = 1215

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 16  GAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMPLTSFKKTAPTRPRPR 75
           G E Q         + SR  GD EP     A E        W+ P  S ++ +P+RP   
Sbjct: 748 GQETQAWSPVRERTSDSRSPGDLEPSHHPSAFETETSSD--WDPPAESQERASPSRPATP 805

Query: 76  ARLCSVRRLPGAHE 89
           A +     + G H+
Sbjct: 806 APVLGKALVKGLHD 819


>gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens]
          Length = 1215

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 7   ASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP--LTSF 64
           A T     G     G G  +     +R +G  +PRG +P    AVR +RG  +P    + 
Sbjct: 120 ARTPAVRAGRRAADGPGEEAPAPGRARFSGLSQPRGPQP--RAAVRPRRGGALPRGTGAV 177

Query: 65  KKTAPTRPRPRARLCS-----VRRLPGAHEGGSGRG 95
            +  P     R R CS       RL G   G S RG
Sbjct: 178 PERGPGTEPQRGRRCSDLQGLGGRLRGCPAGPSARG 213


>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
          Length = 288

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 13/101 (12%)

Query: 15  GGAEPQGSGA-GSSGLAHSRPTGDREPRGRRPALECAVR-QQRGWEMPLTSFKKT----A 68
           GG +  G GA G +G+  +       PR RRP    +V  + R    P T  ++T    +
Sbjct: 17  GGCQISGRGARGCNGIPGAAAWEAALPR-RRPRRHPSVNPRSRAAGSPRTRGRRTEERPS 75

Query: 69  PTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQ 109
            +R   R R    R LPG   GG GRGRA      V G G+
Sbjct: 76  GSRLGDRGR---GRALPGGRLGGRGRGRAP---ERVGGRGR 110


>gi|169215211 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 136

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 4  CSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTG 36
          C   + S   C G+E  G+G G SG     PTG
Sbjct: 33 CQRGAASANHCSGSEGAGTGQGLSGFCAWLPTG 65


>gi|239755661 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 89  EGGSGRGRAAAVLHAVAGHGQAVHVH----CLTQRLAGYHVLVLLTHQPVLHQ-----AS 139
           E    RG+A A L AV G  +A  VH     +   LA +  L+L   Q +        A 
Sbjct: 19  ESLKARGQALAQLVAVGGQMRAQRVHMGARAVAHLLAQWAQLLLQLVQLLARALLELCAQ 78

Query: 140 RLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLK 171
           RLH   V     +PLL  +V      GLHLL+
Sbjct: 79  RLHLLAVELHLLLPLLLEVVQVGLHLGLHLLQ 110


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.134    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,430,642
Number of Sequences: 37866
Number of extensions: 747050
Number of successful extensions: 2765
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 2708
Number of HSP's gapped (non-prelim): 109
length of query: 280
length of database: 18,247,518
effective HSP length: 101
effective length of query: 179
effective length of database: 14,423,052
effective search space: 2581726308
effective search space used: 2581726308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press