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Search of human proteins with 239745923
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745923 PREDICTED: hypothetical protein XP_002343577 [Homo
sapiens]
(155 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756910 PREDICTED: hypothetical protein [Homo sapiens] 330 4e-91
gi|239751413 PREDICTED: hypothetical protein XP_002347827 [Homo ... 330 4e-91
gi|239745923 PREDICTED: hypothetical protein XP_002343577 [Homo ... 330 4e-91
gi|4504615 insulin-like growth factor binding protein 1 precurso... 29 1.4
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 29 1.4
gi|239753941 PREDICTED: hypothetical protein [Homo sapiens] 29 1.9
gi|239748481 PREDICTED: hypothetical protein [Homo sapiens] 29 1.9
gi|239742445 PREDICTED: hypothetical protein XP_002342517 [Homo ... 29 1.9
gi|42794771 thioredoxin domain containing 5 isoform 1 precursor ... 28 2.4
gi|253735778 Rho/Rac guanine nucleotide exchange factor 2 isofor... 28 4.1
gi|253735775 Rho/Rac guanine nucleotide exchange factor 2 isofor... 28 4.1
gi|15011974 Rho/Rac guanine nucleotide exchange factor 2 isoofor... 28 4.1
gi|169184025 PREDICTED: hypothetical protein [Homo sapiens] 28 4.1
gi|239752515 PREDICTED: similar to double homeobox, 4 [Homo sapi... 28 4.1
gi|169179740 PREDICTED: hypothetical protein [Homo sapiens] 28 4.1
gi|169180137 PREDICTED: hypothetical protein [Homo sapiens] 28 4.1
gi|4758392 forkhead box D1 [Homo sapiens] 28 4.1
gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo ... 27 5.4
gi|21703710 scotin [Homo sapiens] 27 5.4
gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens] 27 5.4
gi|134031945 SCO-spondin [Homo sapiens] 27 5.4
gi|164565408 common-site lymphoma/leukemia guanine nucleotide ex... 27 5.4
gi|239757412 PREDICTED: hypothetical protein XP_002345272 [Homo ... 27 7.0
gi|239756405 PREDICTED: hypothetical protein [Homo sapiens] 27 7.0
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ... 27 7.0
gi|239750935 PREDICTED: hypothetical protein XP_002347608 [Homo ... 27 7.0
gi|239745329 PREDICTED: hypothetical protein XP_002343427 [Homo ... 27 7.0
gi|111494239 galectin 9 like [Homo sapiens] 27 7.0
gi|253735697 5-hydroxytryptamine (serotonin) receptor 3A isoform... 27 9.2
gi|17196626 patatin-like phospholipase domain containing 3 [Homo... 27 9.2
>gi|239756910 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 330 bits (845), Expect = 4e-91
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MVSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWR 60
MVSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWR
Sbjct: 1 MVSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWR 60
Query: 61 VLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPV 120
VLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPV
Sbjct: 61 VLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPV 120
Query: 121 SVAQKQVKGRGRWGDVGATQSPVAVRELGTLRGAC 155
SVAQKQVKGRGRWGDVGATQSPVAVRELGTLRGAC
Sbjct: 121 SVAQKQVKGRGRWGDVGATQSPVAVRELGTLRGAC 155
>gi|239751413 PREDICTED: hypothetical protein XP_002347827 [Homo
sapiens]
Length = 155
Score = 330 bits (845), Expect = 4e-91
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MVSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWR 60
MVSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWR
Sbjct: 1 MVSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWR 60
Query: 61 VLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPV 120
VLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPV
Sbjct: 61 VLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPV 120
Query: 121 SVAQKQVKGRGRWGDVGATQSPVAVRELGTLRGAC 155
SVAQKQVKGRGRWGDVGATQSPVAVRELGTLRGAC
Sbjct: 121 SVAQKQVKGRGRWGDVGATQSPVAVRELGTLRGAC 155
>gi|239745923 PREDICTED: hypothetical protein XP_002343577 [Homo
sapiens]
Length = 155
Score = 330 bits (845), Expect = 4e-91
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MVSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWR 60
MVSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWR
Sbjct: 1 MVSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWR 60
Query: 61 VLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPV 120
VLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPV
Sbjct: 61 VLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPV 120
Query: 121 SVAQKQVKGRGRWGDVGATQSPVAVRELGTLRGAC 155
SVAQKQVKGRGRWGDVGATQSPVAVRELGTLRGAC
Sbjct: 121 SVAQKQVKGRGRWGDVGATQSPVAVRELGTLRGAC 155
>gi|4504615 insulin-like growth factor binding protein 1 precursor
[Homo sapiens]
Length = 259
Score = 29.3 bits (64), Expect = 1.4
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 53 VPEAAAWRVLLLLLLHAG---GSRWSQAPLGQALPCPAEAGWLHFPISS 98
VP A W VLLLL + G G+ W Q PC AE L P+S+
Sbjct: 4 VPVARVWLVLLLLTVQVGVTAGAPW------QCAPCSAEKLALCPPVSA 46
>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
Length = 1603
Score = 29.3 bits (64), Expect = 1.4
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 66 LLHAGGSRWS-QAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPVSVAQ 124
LL G R Q PLG CP A L + SP G G + AL R+ P + +
Sbjct: 340 LLDVPGRRLEPQQPLGH---CPL-AEPLRLDLCSPHGPPGPEGHPKYALRRTDRPKILCR 395
Query: 125 KQVKGRGRWGDVG 137
++ GRGR D G
Sbjct: 396 RRKAGRGRKADAG 408
>gi|239753941 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 28.9 bits (63), Expect = 1.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 25 TCL--KRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWRVL 62
+CL K GW + G +W R G+ P Q L + EA R+L
Sbjct: 171 SCLLKKEGWEWK-GAEWGRSAGISPAQILKIDEARKRRLL 209
>gi|239748481 PREDICTED: hypothetical protein [Homo sapiens]
Length = 199
Score = 28.9 bits (63), Expect = 1.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 25 TCL--KRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWRVL 62
+CL K GW + G +W R G+ P Q L + EA R+L
Sbjct: 145 SCLLKKEGWEWK-GAEWGRSAGISPAQILKIDEARKRRLL 183
>gi|239742445 PREDICTED: hypothetical protein XP_002342517 [Homo
sapiens]
Length = 199
Score = 28.9 bits (63), Expect = 1.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 25 TCL--KRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWRVL 62
+CL K GW + G +W R G+ P Q L + EA R+L
Sbjct: 145 SCLLKKEGWEWK-GAEWGRSAGISPAQILKIDEARKRRLL 183
>gi|42794771 thioredoxin domain containing 5 isoform 1 precursor
[Homo sapiens]
Length = 432
Score = 28.5 bits (62), Expect = 2.4
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 50 PLPVPEAAAWRVLLLLLLHAGGSRW 74
PL AA +LLLLL H GG RW
Sbjct: 10 PLLARPAALTALLLLLLGHGGGGRW 34
>gi|253735778 Rho/Rac guanine nucleotide exchange factor 2 isoform 2
[Homo sapiens]
Length = 985
Score = 27.7 bits (60), Expect = 4.1
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 64 LLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPI 96
LL A +R A LGQ P PAEA W P+
Sbjct: 847 LLEREAEEARRQLAALGQTEPLPAEAPWARRPV 879
>gi|253735775 Rho/Rac guanine nucleotide exchange factor 2 isoform 1
[Homo sapiens]
Length = 986
Score = 27.7 bits (60), Expect = 4.1
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 64 LLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPI 96
LL A +R A LGQ P PAEA W P+
Sbjct: 848 LLEREAEEARRQLAALGQTEPLPAEAPWARRPV 880
>gi|15011974 Rho/Rac guanine nucleotide exchange factor 2 isooform 3
[Homo sapiens]
Length = 958
Score = 27.7 bits (60), Expect = 4.1
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 64 LLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPI 96
LL A +R A LGQ P PAEA W P+
Sbjct: 820 LLEREAEEARRQLAALGQTEPLPAEAPWARRPV 852
>gi|169184025 PREDICTED: hypothetical protein [Homo sapiens]
Length = 230
Score = 27.7 bits (60), Expect = 4.1
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 30/106 (28%)
Query: 70 GGSRWSQAPLG--------------QALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSR 115
GG+RWS P G + +P P+ P++ P+ C + A
Sbjct: 37 GGARWSSKPRGPGGAAAGSESQSPPRGVPRPSRR-----PLAHPLPCESV---SPCAWPA 88
Query: 116 SFLPVSVAQKQVKGR--------GRWGDVGATQSPVAVRELGTLRG 153
F P + Q+ KGR +G G + + +R+ G RG
Sbjct: 89 CFGPSGLPQRWPKGRLPSAEQVTNHFGGHGIDTAALEIRDKGPERG 134
>gi|239752515 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 479
Score = 27.7 bits (60), Expect = 4.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 33 QQDGHKWERGRGVGPHQPLPVPEAAAW 59
Q G WE G P + L PEA+AW
Sbjct: 374 QLTGAAWEPQAGAAPPRQLAPPEASAW 400
>gi|169179740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 230
Score = 27.7 bits (60), Expect = 4.1
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 30/106 (28%)
Query: 70 GGSRWSQAPLG--------------QALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSR 115
GG+RWS P G + +P P+ P++ P+ C + A
Sbjct: 37 GGARWSSKPRGPGGAAAGSESQSPPRGVPRPSRR-----PLAHPLPCESV---SPCAWPA 88
Query: 116 SFLPVSVAQKQVKGR--------GRWGDVGATQSPVAVRELGTLRG 153
F P + Q+ KGR +G G + + +R+ G RG
Sbjct: 89 CFGPSGLPQRWPKGRLPSAEQVTNHFGGHGIDTAALEIRDKGPERG 134
>gi|169180137 PREDICTED: hypothetical protein [Homo sapiens]
Length = 230
Score = 27.7 bits (60), Expect = 4.1
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 30/106 (28%)
Query: 70 GGSRWSQAPLG--------------QALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSR 115
GG+RWS P G + +P P+ P++ P+ C + A
Sbjct: 37 GGARWSSKPRGPGGAAAGSESQSPPRGVPRPSRR-----PLAHPLPCESV---SPCAWPA 88
Query: 116 SFLPVSVAQKQVKGR--------GRWGDVGATQSPVAVRELGTLRG 153
F P + Q+ KGR +G G + + +R+ G RG
Sbjct: 89 CFGPSGLPQRWPKGRLPSAEQVTNHFGGHGIDTAALEIRDKGPERG 134
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 27.7 bits (60), Expect = 4.1
Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 1/101 (0%)
Query: 2 VSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWRV 61
+SL+ + P P N G+ T D + R R QPL P AAA
Sbjct: 177 LSLNDCFVKIPREPGNPGKGNYWTLDPESADMFDNGSFLRRRKRFKRQPLLPPNAAAAES 236
Query: 62 LLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGC 102
LLL A G A P PA H P GC
Sbjct: 237 LLLRGAGAAGGAGDPAAAAALFP-PAPPPPPHAYGYGPYGC 276
>gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo
sapiens]
Length = 192
Score = 27.3 bits (59), Expect = 5.4
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 3 SLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWRVL 62
++HP+ DR R + E + C+K W E +G H+ P A VL
Sbjct: 14 AIHPTGDRR--RANTIEKLGVGCCVK--WDATGSKAQEDLGSLGLHEKTPQCAAVRLHVL 69
Query: 63 LLLLL 67
LL+LL
Sbjct: 70 LLILL 74
>gi|21703710 scotin [Homo sapiens]
Length = 240
Score = 27.3 bits (59), Expect = 5.4
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 50 PLPVPEAAAWRVLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQ 109
P+P P +LLLLL G+R G+ C A G FP S P C G D Q
Sbjct: 4 PVPAPRILLPLLLLLLLTPPPGAR------GEV--CMASRGLSLFPESCPDFCCGTCDDQ 55
>gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens]
Length = 1989
Score = 27.3 bits (59), Expect = 5.4
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 6 PSCDRSPSRPH----NRESGSIETCLKRGWSQQDGHKWERGRGVG 46
PS S S P R +++ RG + G +W RGRGVG
Sbjct: 120 PSSSLSESSPRPSFWERSHLALDRFRFRGRPYRGGSRWSRGRGVG 164
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 27.3 bits (59), Expect = 5.4
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 17 NRESGSIETCLKRGWSQQ--DGHKWERGRGVGPHQPLPVPEAAAWRVLLLLLLHAGGSRW 74
N +GS+E C R W Q DG H +P +A+ LL L A G W
Sbjct: 130 NASAGSLEECCARPWGQSWWDGSSQACRSCSSRH----LPGSASSPALLQPLAGAVGQLW 185
Query: 75 SQ 76
SQ
Sbjct: 186 SQ 187
>gi|164565408 common-site lymphoma/leukemia guanine nucleotide
exchange factor [Homo sapiens]
Length = 1386
Score = 27.3 bits (59), Expect = 5.4
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 32 SQQDGHKWERGRGVG--PHQPLPVPEAAAWRVLLLLLLHAGGSRWSQAPLGQALPCPAEA 89
S+Q G +G V P Q LP +A LL GGSR QAP A P P +
Sbjct: 906 SKQGGSPDGQGLHVSNLPKQDLPGIHVSA----ATLLPEQGGSRHVQAP--AATPLPKQE 959
Query: 90 GWLHFPI 96
G LH +
Sbjct: 960 GPLHLQV 966
>gi|239757412 PREDICTED: hypothetical protein XP_002345272 [Homo
sapiens]
Length = 564
Score = 26.9 bits (58), Expect = 7.0
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 3 SLHPSCDR----SPSRPHNRESGSIETCLKRGWS-QQDGHKWERGRG 44
SLHP R S RP +E G TC R WS + ERG G
Sbjct: 8 SLHPGPQRPLPHSRPRPAPQEQGPASTCTGRLWSFDKRRSNGERGPG 54
>gi|239756405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 26.9 bits (58), Expect = 7.0
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 96 ISSPMGCRGIYDAQQVALSRSFLPVS--VAQKQVKGRGRWGDVGATQSPVAVRELGTLRG 153
++ M R +Y A+ + SF S + +K R D+G P A R T RG
Sbjct: 14 VNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEACRPAAARSGATWRG 73
>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
sapiens]
Length = 944
Score = 26.9 bits (58), Expect = 7.0
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 3 SLHPSCDR----SPSRPHNRESGSIETCLKRGWS-QQDGHKWERGRG 44
SLHP R S RP +E G TC R WS + ERG G
Sbjct: 8 SLHPGPQRPLPHSRPRPAPQEQGPASTCTGRLWSFDKRRSNGERGPG 54
>gi|239750935 PREDICTED: hypothetical protein XP_002347608 [Homo
sapiens]
Length = 144
Score = 26.9 bits (58), Expect = 7.0
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 96 ISSPMGCRGIYDAQQVALSRSFLPVS--VAQKQVKGRGRWGDVGATQSPVAVRELGTLRG 153
++ M R +Y A+ + SF S + +K R D+G P A R T RG
Sbjct: 14 VNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEACRPAAARSGATWRG 73
>gi|239745329 PREDICTED: hypothetical protein XP_002343427 [Homo
sapiens]
Length = 144
Score = 26.9 bits (58), Expect = 7.0
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 96 ISSPMGCRGIYDAQQVALSRSFLPVS--VAQKQVKGRGRWGDVGATQSPVAVRELGTLRG 153
++ M R +Y A+ + SF S + +K R D+G P A R T RG
Sbjct: 14 VNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEACRPAAARSGATWRG 73
>gi|111494239 galectin 9 like [Homo sapiens]
Length = 356
Score = 26.9 bits (58), Expect = 7.0
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 41 RGRGVGPHQPLPVPEAAAWRVLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPM 100
RGR P P A + ++ + A G +SQ P + P A + F + P
Sbjct: 175 RGRRQKPPSVRPANPAPITQTVIHTVQSASGQMFSQTPAIPPMMYPHPAYPMPFITTIP- 233
Query: 101 GCRGIYDAQQVALSRSFLP 119
G+Y ++ + LS + LP
Sbjct: 234 --GGLYPSKSIILSGTVLP 250
>gi|253735697 5-hydroxytryptamine (serotonin) receptor 3A isoform a
precursor [Homo sapiens]
Length = 516
Score = 26.6 bits (57), Expect = 9.2
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 86 PAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPVSVAQ 124
PA + LH ++S +GC G+Y +AL L +S+A+
Sbjct: 326 PAPSHLLHVSLASALGCTGVYFVVCMAL----LVISLAE 360
>gi|17196626 patatin-like phospholipase domain containing 3 [Homo
sapiens]
Length = 481
Score = 26.6 bits (57), Expect = 9.2
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 60 RVLLLLLLHAGGSRWSQAPLG--QALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSF 117
RVL+ LL SR SQ P+ QA PC E W + SP GC + + A RS
Sbjct: 396 RVLMCLL---PASR-SQMPVSSQQASPCTPEQDWPCWTPCSPKGCPA--ETKAEATPRSI 449
Query: 118 LPVSV 122
L S+
Sbjct: 450 LRSSL 454
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,297,759
Number of Sequences: 37866
Number of extensions: 382527
Number of successful extensions: 918
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 908
Number of HSP's gapped (non-prelim): 36
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.