Search of human proteins with 239745823

Search of human proteins with 239745823

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745823 PREDICTED: hypothetical protein XP_002343600 [Homo
sapiens]
         (183 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239751324 PREDICTED: hypothetical protein XP_002347807 [Homo ...   365   e-101
gi|239745823 PREDICTED: hypothetical protein XP_002343600 [Homo ...   365   e-101
gi|239756827 PREDICTED: hypothetical protein [Homo sapiens]           253   8e-68
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          32   0.30 
gi|20143482 melanoma antigen family E, 1 [Homo sapiens]                32   0.40 
gi|239755810 PREDICTED: hypothetical protein [Homo sapiens]            31   0.68 
gi|239750310 PREDICTED: hypothetical protein [Homo sapiens]            31   0.68 
gi|239744621 PREDICTED: hypothetical protein [Homo sapiens]            31   0.68 
gi|8393009 chromosome 11 open reading frame2 [Homo sapiens]            29   2.0  
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]            28   4.4  
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]            28   4.4  
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]             28   4.4  
gi|58331253 obscurin, cytoskeletal calmodulin and titin-interact...    28   5.7  
gi|205360947 microtubule associated monoxygenase, calponin and L...    28   5.7  
gi|226530313 microtubule associated monoxygenase, calponin and L...    28   5.7  
gi|239752423 PREDICTED: hypothetical protein [Homo sapiens]            27   7.5  
gi|20336214 glutaminase 2 [Homo sapiens]                               27   7.5  
gi|170763493 tumor-suppressing subtransferable candidate 6 [Homo...    27   7.5  
gi|161169015 neuron navigator 2 isoform 3 [Homo sapiens]               27   7.5  
gi|161169013 neuron navigator 2 isoform 1 [Homo sapiens]               27   7.5  
gi|38044282 neuron navigator 2 isoform 2 [Homo sapiens]                27   7.5  
gi|13435377 glucocorticoid modulatory element binding protein 1 ...    27   7.5  
gi|13435375 glucocorticoid modulatory element binding protein 1 ...    27   7.5  
gi|168229156 NFKB activating protein [Homo sapiens]                    27   9.8  
gi|239756254 PREDICTED: similar to tubulin, beta 5 [Homo sapiens]      27   9.8  
gi|239750785 PREDICTED: similar to tubulin, beta 5 [Homo sapiens]      27   9.8  
gi|126131104 fibrocystin isoform 2 [Homo sapiens]                      27   9.8  
gi|126131102 fibrocystin isoform 1 [Homo sapiens]                      27   9.8  
gi|56090620 NFKB activating protein-like [Homo sapiens]                27   9.8  

>gi|239751324 PREDICTED: hypothetical protein XP_002347807 [Homo
           sapiens]
          Length = 183

 Score =  365 bits (936), Expect = e-101
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP 60
           MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP
Sbjct: 1   MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP 60

Query: 61  LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP 120
           LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP
Sbjct: 61  LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP 120

Query: 121 TLHQEATAIVPPGCSTDPQFLRPALLAPQALILPWGNGSRGKKIGMETLLAGVRSPEPWK 180
           TLHQEATAIVPPGCSTDPQFLRPALLAPQALILPWGNGSRGKKIGMETLLAGVRSPEPWK
Sbjct: 121 TLHQEATAIVPPGCSTDPQFLRPALLAPQALILPWGNGSRGKKIGMETLLAGVRSPEPWK 180

Query: 181 SEL 183
           SEL
Sbjct: 181 SEL 183


>gi|239745823 PREDICTED: hypothetical protein XP_002343600 [Homo
           sapiens]
          Length = 183

 Score =  365 bits (936), Expect = e-101
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP 60
           MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP
Sbjct: 1   MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP 60

Query: 61  LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP 120
           LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP
Sbjct: 61  LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP 120

Query: 121 TLHQEATAIVPPGCSTDPQFLRPALLAPQALILPWGNGSRGKKIGMETLLAGVRSPEPWK 180
           TLHQEATAIVPPGCSTDPQFLRPALLAPQALILPWGNGSRGKKIGMETLLAGVRSPEPWK
Sbjct: 121 TLHQEATAIVPPGCSTDPQFLRPALLAPQALILPWGNGSRGKKIGMETLLAGVRSPEPWK 180

Query: 181 SEL 183
           SEL
Sbjct: 181 SEL 183


>gi|239756827 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 332

 Score =  253 bits (645), Expect = 8e-68
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP 60
           MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP
Sbjct: 1   MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP 60

Query: 61  LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP 120
           LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP
Sbjct: 61  LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP 120

Query: 121 TLHQEATAI 129
           TLHQEATAI
Sbjct: 121 TLHQEATAI 129


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 32.0 bits (71), Expect = 0.30
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 81  GLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHPTLHQ-------EATAIVPPG 133
           G R+  R+  G G   + E   G G+ LLR  +P T    T+          AT+++   
Sbjct: 355 GYRVTWRVLSG-GPTQQQELGPGQGSVLLRDLEPGTDYEVTVSTLFGRSVGPATSLMART 413

Query: 134 CSTDPQFLRPALLAPQALILPW 155
            ++  Q LRP +L P +++L W
Sbjct: 414 DASVEQTLRPVILGPTSILLSW 435


>gi|20143482 melanoma antigen family E, 1 [Homo sapiens]
          Length = 957

 Score = 31.6 bits (70), Expect = 0.40
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 90  EGPGTGVRLERRAGLGTAL--LRPRQPETTTHPTLHQEATAIVPPGCSTDPQFLRPAL-- 145
           EGPGT V L    GL T++       P T+  PT  +  +  VPP     P    PA   
Sbjct: 206 EGPGTSVPLAATEGLSTSVQATPDEGPSTSVPPTATEGLSTPVPPTRDEGPSTSVPATPG 265

Query: 146 LAPQALILP 154
             P   +LP
Sbjct: 266 EGPSTSVLP 274


>gi|239755810 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 499

 Score = 30.8 bits (68), Expect = 0.68
 Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 101 RAGLGTALLRPRQP----ETTTHPTLHQEATAIVPPGCSTDPQFLRPALLAPQALILPWG 156
           RAG  TAL RP         T HP +H    +  P G  + P+ L PA    QA     G
Sbjct: 235 RAGSLTAL-RPNPDLVTVPLTAHPPVHPPLRSGPPLGAGSRPRALCPAQTPSQASSSGGG 293

Query: 157 NGSRGKKIGMETLLAGVR 174
            G+ G   G + LL   R
Sbjct: 294 RGTSGAGEGHQHLLITYR 311


>gi|239750310 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 499

 Score = 30.8 bits (68), Expect = 0.68
 Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 101 RAGLGTALLRPRQP----ETTTHPTLHQEATAIVPPGCSTDPQFLRPALLAPQALILPWG 156
           RAG  TAL RP         T HP +H    +  P G  + P+ L PA    QA     G
Sbjct: 235 RAGSLTAL-RPNPDLVTVPLTAHPPVHPPLRSGPPLGAGSRPRALCPAQTPSQASSSGGG 293

Query: 157 NGSRGKKIGMETLLAGVR 174
            G+ G   G + LL   R
Sbjct: 294 RGTSGAGEGHQHLLITYR 311


>gi|239744621 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 536

 Score = 30.8 bits (68), Expect = 0.68
 Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 101 RAGLGTALLRPRQP----ETTTHPTLHQEATAIVPPGCSTDPQFLRPALLAPQALILPWG 156
           RAG  TAL RP         T HP +H    +  P G  + P+ L PA    QA     G
Sbjct: 272 RAGSLTAL-RPNPDLVTVPLTAHPPVHPPLRSGPPLGAGSRPRALCPAQTPSQASSSGGG 330

Query: 157 NGSRGKKIGMETLLAGVR 174
            G+ G   G + LL   R
Sbjct: 331 RGTSGAGEGHQHLLITYR 348


>gi|8393009 chromosome 11 open reading frame2 [Homo sapiens]
          Length = 782

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 14/105 (13%)

Query: 71  GEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHPTLHQEATAIV 130
           G  D+ ++VR L   HR    PG  +     A   T ++     E   H   H +     
Sbjct: 361 GGGDNSLLVRALDRFHRRLRAPGALLAAAGLADAATEIVERVARERLGH---HLQGLRAA 417

Query: 131 PPGCSTDPQFLRPALLAPQALILPWGNGSRGKKIGMETLLAGVRS 175
             GC TD   +R AL AP+        G  G   G+  LLA V S
Sbjct: 418 FLGCLTD---VRQALAAPRVA------GKEGP--GLAELLANVAS 451


>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 414

 Score = 28.1 bits (61), Expect = 4.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 96  VRLERRAGLGTALLRPRQPETTTHPTLHQEATAIVPPGCS 135
           +R E       + +RPR  E  + PTL   A+A+ PP  S
Sbjct: 9   IRSEEGRPTTESRIRPRLAEALSQPTLRHSASALRPPRLS 48


>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 414

 Score = 28.1 bits (61), Expect = 4.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 96  VRLERRAGLGTALLRPRQPETTTHPTLHQEATAIVPPGCS 135
           +R E       + +RPR  E  + PTL   A+A+ PP  S
Sbjct: 9   IRSEEGRPTTESRIRPRLAEALSQPTLRHSASALRPPRLS 48


>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 414

 Score = 28.1 bits (61), Expect = 4.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 96  VRLERRAGLGTALLRPRQPETTTHPTLHQEATAIVPPGCS 135
           +R E       + +RPR  E  + PTL   A+A+ PP  S
Sbjct: 9   IRSEEGRPTTESRIRPRLAEALSQPTLRHSASALRPPRLS 48


>gi|58331253 obscurin, cytoskeletal calmodulin and titin-interacting
            RhoGEF isoform a [Homo sapiens]
          Length = 6620

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 19/65 (29%)

Query: 131  PPGCSTDPQFLRPALLAPQALILPWGNGSR------GKKIGMETL-----------LAGV 173
            P  CS  P  LRP LLAP  L LP     R      G+K  + TL           L G+
Sbjct: 6261 PSRCSASP--LRPGLLAPDLLYLPGAGQPRRPEAEPGQKPVVPTLYVTEAEAHSPALPGL 6318

Query: 174  RSPEP 178
              P+P
Sbjct: 6319 SGPQP 6323


>gi|205360947 microtubule associated monoxygenase, calponin and LIM
           domain containing 1 isoform 1 [Homo sapiens]
          Length = 1067

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 1/110 (0%)

Query: 15  VEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVV-AASQPLSHGLQVLTNGEA 73
           V+   +GA +  VLA R  +   +     +  H+ +  + +  A++  +  L+ +T  + 
Sbjct: 420 VKRWAEGAESLEVLAERESLYQLLSQTSPENMHRNVAQYGLDPATRYPNLNLRAVTPNQV 479

Query: 74  DDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHPTLH 123
            DL  V     + R ++   TG+     AG    LLR  Q +T  +P +H
Sbjct: 480 RDLYDVLAKEPVQRNNDKTDTGMPATGSAGTQEELLRWCQEQTAGYPGVH 529


>gi|226530313 microtubule associated monoxygenase, calponin and LIM
           domain containing 1 isoform 2 [Homo sapiens]
          Length = 981

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 1/110 (0%)

Query: 15  VEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVV-AASQPLSHGLQVLTNGEA 73
           V+   +GA +  VLA R  +   +     +  H+ +  + +  A++  +  L+ +T  + 
Sbjct: 334 VKRWAEGAESLEVLAERESLYQLLSQTSPENMHRNVAQYGLDPATRYPNLNLRAVTPNQV 393

Query: 74  DDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHPTLH 123
            DL  V     + R ++   TG+     AG    LLR  Q +T  +P +H
Sbjct: 394 RDLYDVLAKEPVQRNNDKTDTGMPATGSAGTQEELLRWCQEQTAGYPGVH 443


>gi|239752423 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 199

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 37/127 (29%), Positives = 50/127 (39%), Gaps = 27/127 (21%)

Query: 10  LLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQPLSHGLQVLT 69
           L+ L  ++ L     A V+   G +L  VGD PLQ G  E       A     H      
Sbjct: 56  LVLLPSKDSLHLGQKAPVIIEEGALLLDVGDHPLQGGPCE-------AGDEERH-----L 103

Query: 70  NGEADDLVVVR---GLRLLHRLHEGPGTGVRLERRAGLGTAL--LRPRQPET-------T 117
            G A + V+V    G RL   L E  G  V   +R G G  +     R+P+         
Sbjct: 104 QGVAGERVLVHEHVGARLHDELRESVGIAV---KRLGKGNRVPPATRRRPDRQGQEGLYQ 160

Query: 118 THPTLHQ 124
            HPT+H+
Sbjct: 161 LHPTVHR 167


>gi|20336214 glutaminase 2 [Homo sapiens]
          Length = 602

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 32  GVVLATVGDDPLQVGHKELPGHVVAASQPLSHGLQVLTNG 71
           GV L TV      VGH ++P  + +  +PL++ + + T G
Sbjct: 195 GVSLCTVDGQRHSVGHTKIPFCLQSCVKPLTYAISISTLG 234


>gi|170763493 tumor-suppressing subtransferable candidate 6 [Homo
           sapiens]
          Length = 320

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 122 LHQEATAIVPPGCSTDPQFLRPALLAPQAL 151
           LH EA AI P GCS   ++L+ +  AP  L
Sbjct: 263 LHSEAVAIGPRGCSGSLRWLQESDAAPLPL 292


>gi|161169015 neuron navigator 2 isoform 3 [Homo sapiens]
          Length = 2365

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 111 PRQPETTTHPTLHQEATAIVPPGCSTDPQFLRPALLAPQ--ALILPWGNGSRGKKIGMET 168
           P     ++HP +   A A +  G S+ P     +   PQ  A   PW + S   K     
Sbjct: 248 PLASSASSHPGMSDNAPASLESGSSSTPTNCSTSSAIPQPGAATKPWRSKSLSVKHSATV 307

Query: 169 LLAGVRSPEP 178
            +  V+ P P
Sbjct: 308 SMLSVKPPGP 317


>gi|161169013 neuron navigator 2 isoform 1 [Homo sapiens]
          Length = 2432

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 111 PRQPETTTHPTLHQEATAIVPPGCSTDPQFLRPALLAPQ--ALILPWGNGSRGKKIGMET 168
           P     ++HP +   A A +  G S+ P     +   PQ  A   PW + S   K     
Sbjct: 312 PLASSASSHPGMSDNAPASLESGSSSTPTNCSTSSAIPQPGAATKPWRSKSLSVKHSATV 371

Query: 169 LLAGVRSPEP 178
            +  V+ P P
Sbjct: 372 SMLSVKPPGP 381


>gi|38044282 neuron navigator 2 isoform 2 [Homo sapiens]
          Length = 2429

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 111 PRQPETTTHPTLHQEATAIVPPGCSTDPQFLRPALLAPQ--ALILPWGNGSRGKKIGMET 168
           P     ++HP +   A A +  G S+ P     +   PQ  A   PW + S   K     
Sbjct: 312 PLASSASSHPGMSDNAPASLESGSSSTPTNCSTSSAIPQPGAATKPWRSKSLSVKHSATV 371

Query: 169 LLAGVRSPEP 178
            +  V+ P P
Sbjct: 372 SMLSVKPPGP 381


>gi|13435377 glucocorticoid modulatory element binding protein 1
           isoform 1 [Homo sapiens]
          Length = 573

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 9/161 (5%)

Query: 1   MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP 60
           +GL+      ++ E+EELL+G     + A   V  A V ++   V H    G +    + 
Sbjct: 266 VGLMEEVVCNIQKEIEELLRGVQQRLIQAPFQVTDAAVLNN---VAHTF--GLMDTVKKV 320

Query: 61  LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP 120
           L +    +  GE   L  +  L       +  G   RL+ +      L+    P+    P
Sbjct: 321 LDNRRNQVEQGEEQFLYTLTDLERQLEEQKKQGQDHRLKSQTVQNVVLMPVSTPKPPKRP 380

Query: 121 TLHQEA--TAIVPPGCSTDPQF--LRPALLAPQALILPWGN 157
            L + A  T + P      PQF  + P  + P       GN
Sbjct: 381 RLQRPASTTVLSPSPPVQQPQFTVISPITITPVGQSFSMGN 421


>gi|13435375 glucocorticoid modulatory element binding protein 1
           isoform 2 [Homo sapiens]
          Length = 563

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 9/161 (5%)

Query: 1   MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP 60
           +GL+      ++ E+EELL+G     + A   V  A V ++   V H    G +    + 
Sbjct: 256 VGLMEEVVCNIQKEIEELLRGVQQRLIQAPFQVTDAAVLNN---VAHTF--GLMDTVKKV 310

Query: 61  LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP 120
           L +    +  GE   L  +  L       +  G   RL+ +      L+    P+    P
Sbjct: 311 LDNRRNQVEQGEEQFLYTLTDLERQLEEQKKQGQDHRLKSQTVQNVVLMPVSTPKPPKRP 370

Query: 121 TLHQEA--TAIVPPGCSTDPQF--LRPALLAPQALILPWGN 157
            L + A  T + P      PQF  + P  + P       GN
Sbjct: 371 RLQRPASTTVLSPSPPVQQPQFTVISPITITPVGQSFSMGN 411


>gi|168229156 NFKB activating protein [Homo sapiens]
          Length = 415

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 35  LATVGDDPLQVGHKELPGHVVAASQPLSHGLQVLTNGE 72
           L +  D PL  GH  LPG   A ++ +  G ++   GE
Sbjct: 299 LTSQDDKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGE 336


>gi|239756254 PREDICTED: similar to tubulin, beta 5 [Homo sapiens]
          Length = 365

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 46 GHKELPGHVVAASQPLSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGV 96
          G K +P  ++   +P      ++ + EA+    ++G +L H L EG G+G+
Sbjct: 38 GDKYVPPTILVDPEP-----GIMDSKEAESCDCLQGFQLTHSLGEGTGSGM 83


>gi|239750785 PREDICTED: similar to tubulin, beta 5 [Homo sapiens]
          Length = 365

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 46 GHKELPGHVVAASQPLSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGV 96
          G K +P  ++   +P      ++ + EA+    ++G +L H L EG G+G+
Sbjct: 38 GDKYVPPTILVDPEP-----GIMDSKEAESCDCLQGFQLTHSLGEGTGSGM 83


>gi|126131104 fibrocystin isoform 2 [Homo sapiens]
          Length = 3396

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 22   AGTAAVLAVRGVVLATVGDDPLQVGHKELP--------GHVVAASQPLSHGLQVLT 69
            +G+   + +RG  LAT  D+P+     +LP         HVV  ++ L+ G   L+
Sbjct: 1496 SGSLTTVLIRGQRLATTADEPMVFVDDQLPCNVTFFNASHVVCQTRDLAPGPHYLS 1551


>gi|126131102 fibrocystin isoform 1 [Homo sapiens]
          Length = 4074

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 22   AGTAAVLAVRGVVLATVGDDPLQVGHKELP--------GHVVAASQPLSHGLQVLT 69
            +G+   + +RG  LAT  D+P+     +LP         HVV  ++ L+ G   L+
Sbjct: 1496 SGSLTTVLIRGQRLATTADEPMVFVDDQLPCNVTFFNASHVVCQTRDLAPGPHYLS 1551


>gi|56090620 NFKB activating protein-like [Homo sapiens]
          Length = 402

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 6   NEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDD-PLQVGHKELPGHVVAASQPLSHG 64
           +E  L E    E    A T  ++     ++ T  D+ PL+ GH  LPG   A ++ +  G
Sbjct: 256 SEEDLSEATWMEQPNVADTMDLIGPEAPIIHTSQDEKPLKYGHALLPGEGAAMAEYVKAG 315

Query: 65  LQVLTNGE 72
            ++   GE
Sbjct: 316 KRIPRRGE 323


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,967,015
Number of Sequences: 37866
Number of extensions: 384805
Number of successful extensions: 1106
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1094
Number of HSP's gapped (non-prelim): 30
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.