Guide to the Human Genome
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Name: TSPAN32 Sequence: fasta or formatted (320aa) NCBI GI: 170763493
Description:

tumor-suppressing subtransferable candidate 6

Referenced in:

Integrins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         35           3
 C cysteine            5.0         16           2
 D aspartate           2.8          9           1
 E glutamate           4.1         13           2
 F phenylalanine       4.7         15           2
 G glycine             8.8         28           2
 H histidine           2.8          9           1
 I isoleucine          2.2          7           1
 K lysine              2.2          7           2
 L leucine            13.8         44           3
 M methionine          1.9          6           1
 N asparagine          0.3          1           1
 P proline             3.8         12           1
 Q glutamine           5.9         19           2
 R arginine            7.2         23           2
 S serine              9.4         30           2
 T threonine           5.0         16           1
 V valine              6.2         20           2
 W tryptophan          1.6          5           1
 Y tyrosine            1.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor-suppressing subtransferable candidate 6 [Homo... 
TSPAN2                0.027   tetraspan 2 
CD81                  0.022   CD81 antigen 
CD9                   0.016   CD9 antigen 
TRIM67                0.008   tripartite motif-containing 67 
EGFR                  0.008   epidermal growth factor receptor isoform a precursor...
LRP2                  0.008   low density lipoprotein-related protein 2 
NTN3                  0.006   netrin 3 
FAM171A2              0.006   family with sequence similarity 171, member A2 [Hom...
FAM134A               0.006   hypothetical protein LOC79137 
TSPAN8                0.005   transmembrane 4 superfamily member 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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