Guide to the Human Genome
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Name: SRFBP1 Sequence: fasta or formatted (429aa) NCBI GI: 103471995
Description:

serum response factor binding protein 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         24           2
 C cysteine            0.5          2           1
 D aspartate           5.6         24           2
 E glutamate           9.6         41           3
 F phenylalanine       3.7         16           2
 G glycine             4.0         17           2
 H histidine           2.1          9           1
 I isoleucine          4.2         18           1
 K lysine             13.8         59           3
 L leucine             7.5         32           2
 M methionine          1.2          5           1
 N asparagine          5.4         23           2
 P proline             4.0         17           1
 Q glutamine           4.9         21           2
 R arginine            6.1         26           3
 S serine             10.7         46           2
 T threonine           5.1         22           1
 V valine              5.4         23           2
 W tryptophan          0.2          1           1
 Y tyrosine            0.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   serum response factor binding protein 1 
BOD1L                 0.030   biorientation of chromosomes in cell division 1-like...
GOLGA4                0.027   golgi autoantigen, golgin subfamily a, 4 
CLIP1                 0.023   restin isoform b 
CLIP1                 0.023   restin isoform a 
HIRIP3                0.023   HIRA interacting protein 3 
YTHDC1                0.021   splicing factor YT521-B isoform 1 
DSPP                  0.021   dentin sialophosphoprotein preproprotein 
PRPF4B                0.021   serine/threonine-protein kinase PRP4K 
AP3B1                 0.020   adaptor-related protein complex 3, beta 1 subunit [H...
ANKRD11               0.020   ankyrin repeat domain 11 
IWS1                  0.020   IWS1 homolog 
SSRP1                 0.020   structure specific recognition protein 1 
NKTR                  0.020   natural killer-tumor recognition sequence 
RBM25                 0.020   RNA binding motif protein 25 
ACIN1                 0.018   apoptotic chromatin condensation inducer 1 
DCDC2                 0.018   doublecortin domain containing 2 
WDR87                 0.018   NYD-SP11 protein 
NEFH                  0.018   neurofilament, heavy polypeptide 200kDa 
CYLC1                 0.018   cylicin, basic protein of sperm head cytoskeleton 1...
CENPE                 0.018   centromere protein E 
NIPBL                 0.018   delangin isoform B 
NIPBL                 0.018   delangin isoform A 
HTATSF1               0.018   HIV-1 Tat specific factor 1 
HTATSF1               0.018   HIV-1 Tat specific factor 1 
UACA                  0.017   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.017   uveal autoantigen with coiled-coil domains and ankyr...
EEA1                  0.017   early endosome antigen 1, 162kD 
RSF1                  0.017   remodeling and spacing factor 1 
NEFM                  0.017   neurofilament, medium polypeptide 150kDa isoform 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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