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Search of human proteins with 239745582
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745582 PREDICTED: hypothetical protein XP_002344135 [Homo
sapiens]
(82 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756601 PREDICTED: hypothetical protein [Homo sapiens] 162 7e-41
gi|239751093 PREDICTED: hypothetical protein [Homo sapiens] 162 7e-41
gi|239745582 PREDICTED: hypothetical protein XP_002344135 [Homo ... 162 7e-41
gi|239742474 PREDICTED: hypothetical protein [Homo sapiens] 52 8e-08
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 29 0.71
gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens] 29 0.92
gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens] 29 0.92
gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens] 29 0.92
gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens] 27 3.5
gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens] 27 3.5
gi|157384998 low density lipoprotein receptor-related protein 4 ... 27 4.6
gi|169234787 hypothetical protein LOC55683 isoform a [Homo sapiens] 27 4.6
gi|21361734 hypothetical protein LOC55683 isoform b [Homo sapiens] 27 4.6
gi|4758900 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3... 26 6.0
gi|224494572 hypothetical protein LOC401082 [Homo sapiens] 26 7.8
gi|169214031 PREDICTED: hypothetical LOC646508 [Homo sapiens] 26 7.8
gi|169202970 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|239751865 PREDICTED: hypothetical LOC646508 [Homo sapiens] 26 7.8
gi|169203510 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|239747212 PREDICTED: hypothetical protein XP_002346939 [Homo ... 26 7.8
gi|169213419 PREDICTED: hypothetical LOC646508 [Homo sapiens] 26 7.8
gi|169202296 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|118582257 vesicular acetylcholine transporter [Homo sapiens] 26 7.8
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 26 7.8
>gi|239756601 PREDICTED: hypothetical protein [Homo sapiens]
Length = 82
Score = 162 bits (409), Expect = 7e-41
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MSCRPAMPLPLPLSSKRSLWEPVYLLVSVSRSTAPPVFAFLTPTLAGSLPATSWQMASKA 60
MSCRPAMPLPLPLSSKRSLWEPVYLLVSVSRSTAPPVFAFLTPTLAGSLPATSWQMASKA
Sbjct: 1 MSCRPAMPLPLPLSSKRSLWEPVYLLVSVSRSTAPPVFAFLTPTLAGSLPATSWQMASKA 60
Query: 61 SSLLFPLNLLVASSSRAFLNSS 82
SSLLFPLNLLVASSSRAFLNSS
Sbjct: 61 SSLLFPLNLLVASSSRAFLNSS 82
>gi|239751093 PREDICTED: hypothetical protein [Homo sapiens]
Length = 82
Score = 162 bits (409), Expect = 7e-41
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MSCRPAMPLPLPLSSKRSLWEPVYLLVSVSRSTAPPVFAFLTPTLAGSLPATSWQMASKA 60
MSCRPAMPLPLPLSSKRSLWEPVYLLVSVSRSTAPPVFAFLTPTLAGSLPATSWQMASKA
Sbjct: 1 MSCRPAMPLPLPLSSKRSLWEPVYLLVSVSRSTAPPVFAFLTPTLAGSLPATSWQMASKA 60
Query: 61 SSLLFPLNLLVASSSRAFLNSS 82
SSLLFPLNLLVASSSRAFLNSS
Sbjct: 61 SSLLFPLNLLVASSSRAFLNSS 82
>gi|239745582 PREDICTED: hypothetical protein XP_002344135 [Homo
sapiens]
Length = 82
Score = 162 bits (409), Expect = 7e-41
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MSCRPAMPLPLPLSSKRSLWEPVYLLVSVSRSTAPPVFAFLTPTLAGSLPATSWQMASKA 60
MSCRPAMPLPLPLSSKRSLWEPVYLLVSVSRSTAPPVFAFLTPTLAGSLPATSWQMASKA
Sbjct: 1 MSCRPAMPLPLPLSSKRSLWEPVYLLVSVSRSTAPPVFAFLTPTLAGSLPATSWQMASKA 60
Query: 61 SSLLFPLNLLVASSSRAFLNSS 82
SSLLFPLNLLVASSSRAFLNSS
Sbjct: 61 SSLLFPLNLLVASSSRAFLNSS 82
>gi|239742474 PREDICTED: hypothetical protein [Homo sapiens]
Length = 589
Score = 52.4 bits (124), Expect = 8e-08
Identities = 26/40 (65%), Positives = 29/40 (72%)
Query: 1 MSCRPAMPLPLPLSSKRSLWEPVYLLVSVSRSTAPPVFAF 40
+S RPA+PLPLP SKRSLWEPV L+VSVS T AF
Sbjct: 106 VSTRPALPLPLPEGSKRSLWEPVNLVVSVSLDTVGDEMAF 145
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 29.3 bits (64), Expect = 0.71
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 5 PAMPLPLPLSSKRSLWEPVYLLVSVSRSTAPPVFAFLTPTLAGSLPA 51
P+ P+PLP + L EP + S++R PP A P PA
Sbjct: 590 PSTPVPLPEKRRSILREPTFRWTSLTRELPPPPPAPPPPPAPSPPPA 636
>gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens]
Length = 370
Score = 28.9 bits (63), Expect = 0.92
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 5 PAMPLPLPLSSKRSLWEPVYLLVSVSRSTAPP 36
P MPLPLPL+ + +LW + V+ + PP
Sbjct: 338 PTMPLPLPLAMELALWR---VYTEVATADLPP 366
>gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens]
Length = 367
Score = 28.9 bits (63), Expect = 0.92
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 5 PAMPLPLPLSSKRSLWEPVYLLVSVSRSTAPP 36
P MPLPLPL+ + +LW + V+ + PP
Sbjct: 335 PTMPLPLPLAMELALWR---VYTEVATADLPP 363
>gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]
Length = 1597
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 9 LPLPLSSKRSLWEPV-------YLLVSVSRSTAPPVFAF--LTPTLAGSLPATSW 54
+PLP S+ R+ W P + S S+S P AF +T L S P T W
Sbjct: 887 VPLPASAGRTSWPPATARSTESFTSTSRSKSEVSPGMAFSNMTNFLCPSSPTTPW 941
>gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens]
Length = 1256
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 28 SVSRSTAPPVFAFLTPTLAGSLPATSW---QMASKASSLLFPLN 68
S+ STAPP F LTP G P + + + S L PLN
Sbjct: 497 SLPFSTAPPTFPALTPGFPGIFPPSLYPRPPLLPPTSLLKSPLN 540
>gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens]
Length = 1275
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 28 SVSRSTAPPVFAFLTPTLAGSLPATSW---QMASKASSLLFPLN 68
S+ STAPP F LTP G P + + + S L PLN
Sbjct: 497 SLPFSTAPPTFPALTPGFPGIFPPSLYPRPPLLPPTSLLKSPLN 540
>gi|157384998 low density lipoprotein receptor-related protein 4 [Homo
sapiens]
Length = 1905
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 26 LVSVSRSTAPPVFAFLTPTLAGSLPATSWQMASKASS 62
L+ +S V TP GSLP T W+ K SS
Sbjct: 1865 LLQEEQSECSSVHTAATPERRGSLPDTGWKHERKLSS 1901
>gi|169234787 hypothetical protein LOC55683 isoform a [Homo sapiens]
Length = 878
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 29 VSRSTAPPVFAFLTPTLAGSLPATSWQMASKASSLL 64
VS STAP L L + P +S A+ ASSLL
Sbjct: 690 VSSSTAPSALHTLQSRLVATSPGSSLPGATSASSLL 725
>gi|21361734 hypothetical protein LOC55683 isoform b [Homo sapiens]
Length = 791
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 29 VSRSTAPPVFAFLTPTLAGSLPATSWQMASKASSLL 64
VS STAP L L + P +S A+ ASSLL
Sbjct: 603 VSSSTAPSALHTLQSRLVATSPGSSLPGATSASSLL 638
>gi|4758900 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
isoform 1 [Homo sapiens]
Length = 520
Score = 26.2 bits (56), Expect = 6.0
Identities = 18/53 (33%), Positives = 23/53 (43%)
Query: 7 MPLPLPLSSKRSLWEPVYLLVSVSRSTAPPVFAFLTPTLAGSLPATSWQMASK 59
MPL L S + +W PV S+ RS P + T + LPA SK
Sbjct: 1 MPLELTQSRVQKIWVPVDHRPSLPRSCGPKLTNSPTVIVMVGLPARGKTYISK 53
>gi|224494572 hypothetical protein LOC401082 [Homo sapiens]
Length = 95
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 3 CRPAMPLPLPLSSKRSLWEPVYLLVSVSRSTAPPVFAFLTP 43
C P + + +P + + W V+++ V + +P FAFL P
Sbjct: 49 CTPPIQVHIPRNEDNA-WHKVFIIPLVFFTISPHKFAFLKP 88
>gi|169214031 PREDICTED: hypothetical LOC646508 [Homo sapiens]
Length = 560
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 8/32 (25%)
Query: 5 PAMPLPLPLSSKRSLWEPVYLLVSVSRSTAPP 36
P MPLP+ + KRS+ PV ST PP
Sbjct: 247 PTMPLPVHTTKKRSVLGPV--------STGPP 270
>gi|169202970 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 25.8 bits (55), Expect = 7.8
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 6 AMPLPLPLSSKRSLWEPVYLLVSVSRSTAPPVFAFLTPTLAGSLPA 51
A P P PLSS+R L P +PP A TPT GS PA
Sbjct: 38 APPPPHPLSSRRGLGPP-------RAGGSPPPTAPPTPT--GSFPA 74
>gi|239751865 PREDICTED: hypothetical LOC646508 [Homo sapiens]
Length = 528
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 8/32 (25%)
Query: 5 PAMPLPLPLSSKRSLWEPVYLLVSVSRSTAPP 36
P MPLP+ + KRS+ PV ST PP
Sbjct: 215 PTMPLPVHTTKKRSVLGPV--------STGPP 238
>gi|169203510 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 25.8 bits (55), Expect = 7.8
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 6 AMPLPLPLSSKRSLWEPVYLLVSVSRSTAPPVFAFLTPTLAGSLPA 51
A P P PLSS+R L P +PP A TPT GS PA
Sbjct: 38 APPPPHPLSSRRGLGPP-------RAGGSPPPTAPPTPT--GSFPA 74
>gi|239747212 PREDICTED: hypothetical protein XP_002346939 [Homo
sapiens]
Length = 1158
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 28 SVSRSTAPPVFAFLTPTLAGSLP 50
S+ STAPP F LTP G P
Sbjct: 398 SLPFSTAPPTFPALTPGFPGIFP 420
>gi|169213419 PREDICTED: hypothetical LOC646508 [Homo sapiens]
Length = 560
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 8/32 (25%)
Query: 5 PAMPLPLPLSSKRSLWEPVYLLVSVSRSTAPP 36
P MPLP+ + KRS+ PV ST PP
Sbjct: 247 PTMPLPVHTTKKRSVLGPV--------STGPP 270
>gi|169202296 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 25.8 bits (55), Expect = 7.8
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 6 AMPLPLPLSSKRSLWEPVYLLVSVSRSTAPPVFAFLTPTLAGSLPA 51
A P P PLSS+R L P +PP A TPT GS PA
Sbjct: 38 APPPPHPLSSRRGLGPP-------RAGGSPPPTAPPTPT--GSFPA 74
>gi|118582257 vesicular acetylcholine transporter [Homo sapiens]
Length = 532
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 2 SCRPAMPLPLPLSSKRSLWEPVYLLVSVSRSTAPPVFAFLTPTLA----GSLPATSWQM 56
+ R LP+ R + +P +V+ + +T AFL PT+A ++ A+ W+M
Sbjct: 269 AARARANLPVGTPIHRLMLDPYIAVVAGALTTCNIPLAFLEPTIATWMKHTMAASEWEM 327
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 25.8 bits (55), Expect = 7.8
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 10 PLPLSSKRSLWEPVYLLVSVSRSTAPPVFAFLTPTLAGSLPATSWQMASKASSLLFPLNL 69
P+P+ + L PV VSV S++ P+ S+P T AS ++ L
Sbjct: 1414 PMPIPNSSPLASPVSSTVSVPLSSSLPI----------SVPTTLPAPASAPLTIPISAPL 1463
Query: 70 LVASSSRAFLNS 81
V++S A L S
Sbjct: 1464 TVSASGPALLTS 1475
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.126 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,069,284
Number of Sequences: 37866
Number of extensions: 112110
Number of successful extensions: 406
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 28
length of query: 82
length of database: 18,247,518
effective HSP length: 54
effective length of query: 28
effective length of database: 16,202,754
effective search space: 453677112
effective search space used: 453677112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.