BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239745529 PREDICTED: hypothetical protein XP_002343479 [Homo sapiens] (138 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239745529 PREDICTED: hypothetical protein XP_002343479 [Homo ... 273 3e-74 gi|126032348 hect domain and RLD 2 [Homo sapiens] 171 2e-43 gi|239750779 PREDICTED: similar to hCG2006901 [Homo sapiens] 93 6e-20 gi|239756239 PREDICTED: similar to hCG2006901 [Homo sapiens] 91 3e-19 gi|4507575 tumor necrosis factor receptor 1 precursor [Homo sapi... 32 0.13 gi|9256604 protocadherin beta 11 precursor [Homo sapiens] 31 0.37 gi|11036656 protocadherin beta 7 precursor [Homo sapiens] 30 0.63 gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo ... 30 0.83 gi|9256608 protocadherin beta 14 precursor [Homo sapiens] 30 0.83 gi|4759336 Fanconi anemia, complementation group G [Homo sapiens] 29 1.1 gi|9256602 protocadherin beta 10 precursor [Homo sapiens] 29 1.4 gi|9256614 protocadherin beta 3 precursor [Homo sapiens] 28 1.8 gi|9256606 protocadherin beta 12 precursor [Homo sapiens] 28 1.8 gi|5803048 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein ... 28 1.8 gi|154277120 spectrin repeat containing, nuclear envelope 1 isof... 28 2.4 gi|154277118 spectrin repeat containing, nuclear envelope 1 isof... 28 2.4 gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 28 2.4 gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 28 2.4 gi|193788634 cysteine/histidine-rich 1 isoform 1 [Homo sapiens] 28 2.4 gi|9256618 protocadherin beta 6 precursor [Homo sapiens] 28 2.4 gi|14195605 protocadherin beta 16 precursor [Homo sapiens] 28 2.4 gi|7661662 protocadherin beta 5 precursor [Homo sapiens] 28 3.1 gi|51477723 testis expressed sequence 11 isoform 2 [Homo sapiens] 27 4.1 gi|51477721 testis expressed sequence 11 isoform 1 [Homo sapiens] 27 4.1 gi|148762963 armadillo repeat containing 2 [Homo sapiens] 27 4.1 gi|78000158 eukaryotic translation initiation factor 2B, subunit... 27 4.1 gi|78000156 eukaryotic translation initiation factor 2B, subunit... 27 4.1 gi|187607323 eukaryotic translation initiation factor 2B, subuni... 27 4.1 gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 27 4.1 gi|48255947 plasma membrane calcium ATPase 1 isoform 1a [Homo sa... 27 5.4 >gi|239745529 PREDICTED: hypothetical protein XP_002343479 [Homo sapiens] Length = 138 Score = 273 bits (699), Expect = 3e-74 Identities = 138/138 (100%), Positives = 138/138 (100%) Query: 1 MGVSNQGCSRNARHQKARSMPLQDQHLALAILLELAVQRGTLSQMLSAILLLLQLWDSRA 60 MGVSNQGCSRNARHQKARSMPLQDQHLALAILLELAVQRGTLSQMLSAILLLLQLWDSRA Sbjct: 1 MGVSNQGCSRNARHQKARSMPLQDQHLALAILLELAVQRGTLSQMLSAILLLLQLWDSRA 60 Query: 61 QETDNERSAQGTSTLLLSLLQTFQSIICGKDTPPSEGNMHLLSGPLSPSESFLRYLTLHK 120 QETDNERSAQGTSTLLLSLLQTFQSIICGKDTPPSEGNMHLLSGPLSPSESFLRYLTLHK Sbjct: 61 QETDNERSAQGTSTLLLSLLQTFQSIICGKDTPPSEGNMHLLSGPLSPSESFLRYLTLHK 120 Query: 121 TTSLPLICNKRQLLSWPI 138 TTSLPLICNKRQLLSWPI Sbjct: 121 TTSLPLICNKRQLLSWPI 138 >gi|126032348 hect domain and RLD 2 [Homo sapiens] Length = 4834 Score = 171 bits (432), Expect = 2e-43 Identities = 90/108 (83%), Positives = 95/108 (87%) Query: 19 SMPLQDQHLALAILLELAVQRGTLSQMLSAILLLLQLWDSRAQETDNERSAQGTSTLLLS 78 S+PLQDQHLALAILLELAVQRGTLSQMLSAILLLLQLWDS AQETDNERSAQGTS LL Sbjct: 280 SIPLQDQHLALAILLELAVQRGTLSQMLSAILLLLQLWDSGAQETDNERSAQGTSAPLLP 339 Query: 79 LLQTFQSIICGKDTPPSEGNMHLLSGPLSPSESFLRYLTLHKTTSLPL 126 LLQ FQSIIC KD P SEG+MHLLSGPLSP+ESFLRYLTL + L + Sbjct: 340 LLQRFQSIICRKDAPHSEGDMHLLSGPLSPNESFLRYLTLPQDNELAI 387 >gi|239750779 PREDICTED: similar to hCG2006901 [Homo sapiens] Length = 69 Score = 93.2 bits (230), Expect = 6e-20 Identities = 49/60 (81%), Positives = 51/60 (85%) Query: 42 LSQMLSAILLLLQLWDSRAQETDNERSAQGTSTLLLSLLQTFQSIICGKDTPPSEGNMHL 101 LSQMLSAILLLLQLW S AQETDNERSAQGTS LL LLQ FQSIIC KD P SEG+MH+ Sbjct: 2 LSQMLSAILLLLQLWYSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMHV 61 >gi|239756239 PREDICTED: similar to hCG2006901 [Homo sapiens] Length = 262 Score = 90.9 bits (224), Expect = 3e-19 Identities = 48/60 (80%), Positives = 49/60 (81%) Query: 44 QMLSAILLLLQLWDSRAQETDNERSAQGTSTLLLSLLQTFQSIICGKDTPPSEGNMHLLS 103 QMLSAILLLLQLW S AQETDNERSAQGTS LL LLQ FQSIIC KD P SEG+MH S Sbjct: 52 QMLSAILLLLQLWYSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMHCFS 111 >gi|4507575 tumor necrosis factor receptor 1 precursor [Homo sapiens] Length = 455 Score = 32.3 bits (72), Expect = 0.13 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 8/48 (16%) Query: 73 STLLLSLLQTFQ-------SIICGKDTPPSEGNMH-LLSGPLSPSESF 112 S L + L+ +Q SI+CGK TP EG + + PL+P+ SF Sbjct: 226 SLLFIGLMYRYQRWKSKLYSIVCGKSTPEKEGELEGTTTKPLAPNPSF 273 >gi|9256604 protocadherin beta 11 precursor [Homo sapiens] Length = 797 Score = 30.8 bits (68), Expect = 0.37 Identities = 20/61 (32%), Positives = 28/61 (45%) Query: 20 MPLQDQHLALAILLELAVQRGTLSQMLSAILLLLQLWDSRAQETDNERSAQGTSTLLLSL 79 +P QD HL LA L+ + G L + S LQ +D R TD A + L+ L Sbjct: 491 LPPQDLHLPLASLVSINTDNGHLFALRSLDYEALQAFDFRVGATDRGSPALSSEALVRVL 550 Query: 80 L 80 + Sbjct: 551 V 551 >gi|11036656 protocadherin beta 7 precursor [Homo sapiens] Length = 793 Score = 30.0 bits (66), Expect = 0.63 Identities = 19/61 (31%), Positives = 28/61 (45%) Query: 20 MPLQDQHLALAILLELAVQRGTLSQMLSAILLLLQLWDSRAQETDNERSAQGTSTLLLSL 79 +P QD HL LA L+ + G L + S LQ ++ R TD A + L+ L Sbjct: 491 LPSQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVL 550 Query: 80 L 80 + Sbjct: 551 V 551 >gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo sapiens] Length = 3258 Score = 29.6 bits (65), Expect = 0.83 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 68 SAQGTSTLLLSLLQTFQSIICGKDTPPSEGNMHLLSGPLSPS--ESFLRYLTLHKTTSLP 125 S +GT L+ LQ + ++ K P E ++ LL P S S + + HKT L Sbjct: 344 SEEGTQWSLMYYLQRLRHMLEEKPEKPPEPDIPLLPRPRSSSMVAAAPSLVNTHKTQDLT 403 Query: 126 LICNKRQ 132 + CN+ + Sbjct: 404 MKCNEEE 410 >gi|9256608 protocadherin beta 14 precursor [Homo sapiens] Length = 798 Score = 29.6 bits (65), Expect = 0.83 Identities = 19/61 (31%), Positives = 29/61 (47%) Query: 20 MPLQDQHLALAILLELAVQRGTLSQMLSAILLLLQLWDSRAQETDNERSAQGTSTLLLSL 79 +P QD+HL LA L+ + G L + S LQ ++ R TD A + L+ L Sbjct: 491 LPPQDRHLPLASLVSINADNGHLFALRSLDYEALQEFEFRVGATDRGSPALSSEALVRVL 550 Query: 80 L 80 + Sbjct: 551 V 551 >gi|4759336 Fanconi anemia, complementation group G [Homo sapiens] Length = 622 Score = 29.3 bits (64), Expect = 1.1 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 9/95 (9%) Query: 29 LAILLELAVQRGTLSQMLSAILLLLQLWDSRAQETD---NERSAQGTSTLLLSLL---QT 82 LA+LLE G+ S +LLLL+ W A+E D + AQG +LL+ Q Sbjct: 159 LALLLETL--NGSQSGASKDLLLLLKTWSPPAEELDAPLTLQDAQGLKDVLLTAFAYRQG 216 Query: 83 FQSIICGKDTPPSEGNMHLLSGPLSPSESFLRYLT 117 Q +I G + + ++H + L P ++ T Sbjct: 217 LQELITG-NPDKALSSLHEAASGLCPRPVLVQVYT 250 >gi|9256602 protocadherin beta 10 precursor [Homo sapiens] Length = 800 Score = 28.9 bits (63), Expect = 1.4 Identities = 19/61 (31%), Positives = 27/61 (44%) Query: 20 MPLQDQHLALAILLELAVQRGTLSQMLSAILLLLQLWDSRAQETDNERSAQGTSTLLLSL 79 +P QD HL LA L+ + G L + S LQ ++ R TD A L+ L Sbjct: 491 LPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSREALVRVL 550 Query: 80 L 80 + Sbjct: 551 V 551 >gi|9256614 protocadherin beta 3 precursor [Homo sapiens] Length = 796 Score = 28.5 bits (62), Expect = 1.8 Identities = 18/61 (29%), Positives = 28/61 (45%) Query: 20 MPLQDQHLALAILLELAVQRGTLSQMLSAILLLLQLWDSRAQETDNERSAQGTSTLLLSL 79 +P QD HL L+ L+ + G L + S LQ ++ R TD A + L+ L Sbjct: 491 LPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVL 550 Query: 80 L 80 + Sbjct: 551 V 551 >gi|9256606 protocadherin beta 12 precursor [Homo sapiens] Length = 795 Score = 28.5 bits (62), Expect = 1.8 Identities = 19/61 (31%), Positives = 28/61 (45%) Query: 20 MPLQDQHLALAILLELAVQRGTLSQMLSAILLLLQLWDSRAQETDNERSAQGTSTLLLSL 79 +P QD HL LA L+ + G L + S LQ + R TD+ A + L+ L Sbjct: 491 LPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVL 550 Query: 80 L 80 + Sbjct: 551 V 551 >gi|5803048 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 [Homo sapiens] Length = 212 Score = 28.5 bits (62), Expect = 1.8 Identities = 12/21 (57%), Positives = 17/21 (80%) Query: 40 GTLSQMLSAILLLLQLWDSRA 60 G LS +L+ ILLLL++W SR+ Sbjct: 8 GDLSHLLAIILLLLKIWKSRS 28 >gi|154277120 spectrin repeat containing, nuclear envelope 1 isoform 3 [Homo sapiens] Length = 982 Score = 28.1 bits (61), Expect = 2.4 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Query: 56 WDSRAQETDNERSAQGTSTLLLSLLQTFQSIICGKDTPPSEGNMHL 101 W R+ D+ S Q +S L LSL Q +S G+DTP S ++ L Sbjct: 402 WHDRS--ADSLLSPQPSSNLSLSLAQPLRSERSGRDTPASVDSIPL 445 >gi|154277118 spectrin repeat containing, nuclear envelope 1 isoform 4 [Homo sapiens] Length = 3321 Score = 28.1 bits (61), Expect = 2.4 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Query: 56 WDSRAQETDNERSAQGTSTLLLSLLQTFQSIICGKDTPPSEGNMHL 101 W R+ D+ S Q +S L LSL Q +S G+DTP S ++ L Sbjct: 2764 WHDRS--ADSLLSPQPSSNLSLSLAQPLRSERSGRDTPASVDSIPL 2807 >gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2 [Homo sapiens] Length = 8749 Score = 28.1 bits (61), Expect = 2.4 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Query: 56 WDSRAQETDNERSAQGTSTLLLSLLQTFQSIICGKDTPPSEGNMHL 101 W R+ D+ S Q +S L LSL Q +S G+DTP S ++ L Sbjct: 8169 WHDRS--ADSLLSPQPSSNLSLSLAQPLRSERSGRDTPASVDSIPL 8212 >gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1 [Homo sapiens] Length = 8797 Score = 28.1 bits (61), Expect = 2.4 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Query: 56 WDSRAQETDNERSAQGTSTLLLSLLQTFQSIICGKDTPPSEGNMHL 101 W R+ D+ S Q +S L LSL Q +S G+DTP S ++ L Sbjct: 8240 WHDRS--ADSLLSPQPSSNLSLSLAQPLRSERSGRDTPASVDSIPL 8283 >gi|193788634 cysteine/histidine-rich 1 isoform 1 [Homo sapiens] Length = 362 Score = 28.1 bits (61), Expect = 2.4 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Query: 51 LLLQLWDSRAQETDNERSAQGTSTLLLSLLQTFQSIICGKDTPPSEGNMHLLSGP 105 +L Q W +A+ D+ER+ + LS FQ ++ K T P E + LL GP Sbjct: 257 VLNQTWVLKARVNDSERNPNLSCKRTLS----FQLLLKSKVTAPLECSFLLLKGP 307 >gi|9256618 protocadherin beta 6 precursor [Homo sapiens] Length = 794 Score = 28.1 bits (61), Expect = 2.4 Identities = 18/61 (29%), Positives = 28/61 (45%) Query: 20 MPLQDQHLALAILLELAVQRGTLSQMLSAILLLLQLWDSRAQETDNERSAQGTSTLLLSL 79 +P QD HL L+ L+ + G L + S LQ ++ R TD A + L+ L Sbjct: 489 LPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQSFEFRVGATDRGSPALSSEALVRLL 548 Query: 80 L 80 + Sbjct: 549 V 549 >gi|14195605 protocadherin beta 16 precursor [Homo sapiens] Length = 776 Score = 28.1 bits (61), Expect = 2.4 Identities = 18/61 (29%), Positives = 28/61 (45%) Query: 20 MPLQDQHLALAILLELAVQRGTLSQMLSAILLLLQLWDSRAQETDNERSAQGTSTLLLSL 79 +P QD HL LA L+ + G L + S L+ ++ R TD A + L+ L Sbjct: 491 LPPQDPHLPLASLVSINADNGHLFALRSLDYEALREFEFRVSATDRGSPALSSEALVRVL 550 Query: 80 L 80 + Sbjct: 551 V 551 >gi|7661662 protocadherin beta 5 precursor [Homo sapiens] Length = 795 Score = 27.7 bits (60), Expect = 3.1 Identities = 18/61 (29%), Positives = 28/61 (45%) Query: 20 MPLQDQHLALAILLELAVQRGTLSQMLSAILLLLQLWDSRAQETDNERSAQGTSTLLLSL 79 +P Q+ HL LA L+ + G L + S LQ ++ R TD A + L+ L Sbjct: 490 LPPQNPHLRLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVL 549 Query: 80 L 80 + Sbjct: 550 V 550 >gi|51477723 testis expressed sequence 11 isoform 2 [Homo sapiens] Length = 925 Score = 27.3 bits (59), Expect = 4.1 Identities = 15/52 (28%), Positives = 27/52 (51%) Query: 32 LLELAVQRGTLSQMLSAILLLLQLWDSRAQETDNERSAQGTSTLLLSLLQTF 83 + ++AV G + L AI+ L + E ++ + +G+ T+LLSL F Sbjct: 482 IFKIAVIEGNSERALQAIITLENILTDEESEDNDLVAERGSPTMLLSLAAQF 533 >gi|51477721 testis expressed sequence 11 isoform 1 [Homo sapiens] Length = 940 Score = 27.3 bits (59), Expect = 4.1 Identities = 15/52 (28%), Positives = 27/52 (51%) Query: 32 LLELAVQRGTLSQMLSAILLLLQLWDSRAQETDNERSAQGTSTLLLSLLQTF 83 + ++AV G + L AI+ L + E ++ + +G+ T+LLSL F Sbjct: 497 IFKIAVIEGNSERALQAIITLENILTDEESEDNDLVAERGSPTMLLSLAAQF 548 >gi|148762963 armadillo repeat containing 2 [Homo sapiens] Length = 867 Score = 27.3 bits (59), Expect = 4.1 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Query: 45 MLSAILLLLQLWDSRAQETDNERSAQGTSTLLLSLLQTFQSIICGKDTPPSE-GNMHLLS 103 ++ + +L L Q + +G+ LLSL QTF + P + G H Sbjct: 535 VVRVVFILGNLTAKNNQAREQFSKEKGSIQTLLSLFQTFHQLDLHSQKPVGQRGEQHRAQ 594 Query: 104 GPLSPSESFLRYLT 117 P S +E L LT Sbjct: 595 RPPSEAEDVLIKLT 608 >gi|78000158 eukaryotic translation initiation factor 2B, subunit 4 delta isoform 2 [Homo sapiens] Length = 523 Score = 27.3 bits (59), Expect = 4.1 Identities = 15/43 (34%), Positives = 22/43 (51%) Query: 71 GTSTLLLSLLQTFQSIICGKDTPPSEGNMHLLSGPLSPSESFL 113 G++ ++LL+ Q +I TPP+E L L P SFL Sbjct: 221 GSNARCIALLRALQQVIQDYTTPPNEELSRDLVNKLKPYMSFL 263 >gi|78000156 eukaryotic translation initiation factor 2B, subunit 4 delta isoform 3 [Homo sapiens] Length = 522 Score = 27.3 bits (59), Expect = 4.1 Identities = 15/43 (34%), Positives = 22/43 (51%) Query: 71 GTSTLLLSLLQTFQSIICGKDTPPSEGNMHLLSGPLSPSESFL 113 G++ ++LL+ Q +I TPP+E L L P SFL Sbjct: 220 GSNARCIALLRALQQVIQDYTTPPNEELSRDLVNKLKPYMSFL 262 >gi|187607323 eukaryotic translation initiation factor 2B, subunit 4 delta isoform 1 [Homo sapiens] Length = 543 Score = 27.3 bits (59), Expect = 4.1 Identities = 15/43 (34%), Positives = 22/43 (51%) Query: 71 GTSTLLLSLLQTFQSIICGKDTPPSEGNMHLLSGPLSPSESFL 113 G++ ++LL+ Q +I TPP+E L L P SFL Sbjct: 241 GSNARCIALLRALQQVIQDYTTPPNEELSRDLVNKLKPYMSFL 283 >gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant [Homo sapiens] Length = 616 Score = 27.3 bits (59), Expect = 4.1 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Query: 8 CSRNARHQKARSMPLQDQHLALAILLELAVQR 39 C +N+ HQ+AR+M LQ+ LA A+L V R Sbjct: 150 CVQNS-HQEARNMLLQNPQLAYALLQAQVVMR 180 >gi|48255947 plasma membrane calcium ATPase 1 isoform 1a [Homo sapiens] Length = 1176 Score = 26.9 bits (58), Expect = 5.4 Identities = 13/50 (26%), Positives = 29/50 (58%) Query: 4 SNQGCSRNARHQKARSMPLQDQHLALAILLELAVQRGTLSQMLSAILLLL 53 S +G + + +K ++P +++ + L +LAVQ G ++SAI +++ Sbjct: 338 SEEGGDGDEKDKKKANLPKKEKSVLQGKLTKLAVQIGKAGLLMSAITVII 387 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.131 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,097,216 Number of Sequences: 37866 Number of extensions: 189495 Number of successful extensions: 525 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 496 Number of HSP's gapped (non-prelim): 38 length of query: 138 length of database: 18,247,518 effective HSP length: 91 effective length of query: 47 effective length of database: 14,801,712 effective search space: 695680464 effective search space used: 695680464 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.