Guide to the Human Genome
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Name: KDELR1 Sequence: fasta or formatted (212aa) NCBI GI: 5803048
Description:

KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         14           1
 C cysteine            1.9          4           1
 D aspartate           3.3          7           1
 E glutamate           2.8          6           1
 F phenylalanine       9.4         20           2
 G glycine             4.2          9           1
 H histidine           2.4          5           1
 I isoleucine          7.5         16           2
 K lysine              5.2         11           2
 L leucine            15.6         33           4
 M methionine          1.4          3           1
 N asparagine          2.8          6           1
 P proline             1.9          4           1
 Q glutamine           1.4          3           1
 R arginine            2.8          6           1
 S serine              6.1         13           1
 T threonine           7.5         16           2
 V valine              8.0         17           2
 W tryptophan          2.4          5           1
 Y tyrosine            6.6         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein ... 
KDELR2                0.864   KDEL receptor 2 isoform 1 
KDELR3                0.743   KDEL receptor 3 isoform a 
KDELR3                0.696   KDEL receptor 3 isoform b 
KDELR2                0.427   KDEL receptor 2 isoform 2 
LOC652215             0.410   PREDICTED: similar to KDEL receptor 
ATP6V0A1              0.012   ATPase, H+ transporting, lysosomal V0 subunit a1 iso...
ATP6V0A1              0.012   ATPase, H+ transporting, lysosomal V0 subunit a1 is...
ATP6V0A1              0.012   ATPase, H+ transporting, lysosomal V0 subunit a1 is...
LOC100289574          0.007   PREDICTED: hypothetical protein XP_002343479 
KIAA0430              0.007   limkain b1 
SLC37A1               0.007   solute carrier family 37 member 1 
SLC37A2               0.005   solute carrier family 37 (glycerol-3-phosphate tran...
SLC37A2               0.005   solute carrier family 37 (glycerol-3-phosphate trans...
CHI3L2                0.005   chitinase 3-like 2 isoform c 
CHI3L2                0.005   chitinase 3-like 2 isoform b 
CHI3L2                0.005   chitinase 3-like 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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