Guide to the Human Genome
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Search of human proteins with 239745055

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745055 PREDICTED: hypothetical protein XP_002343352 [Homo
sapiens]
         (100 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169208422 PREDICTED: hypothetical protein [Homo sapiens]           220   2e-58
gi|239745055 PREDICTED: hypothetical protein XP_002343352 [Homo ...   220   2e-58
gi|239753377 PREDICTED: hypothetical protein [Homo sapiens]            33   0.037
gi|239747944 PREDICTED: hypothetical protein XP_002346483 [Homo ...    33   0.037
gi|239741839 PREDICTED: hypothetical protein XP_002342323 [Homo ...    33   0.037
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     33   0.063
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]             33   0.063
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]              33   0.063
gi|169179759 PREDICTED: hypothetical protein [Homo sapiens]            32   0.11 
gi|239746733 PREDICTED: hypothetical protein [Homo sapiens]            32   0.11 
gi|169180158 PREDICTED: hypothetical protein [Homo sapiens]            32   0.11 
gi|239757723 PREDICTED: hypothetical protein [Homo sapiens]            32   0.14 
gi|239752986 PREDICTED: hypothetical protein XP_002345321 [Homo ...    32   0.14 
gi|239752210 PREDICTED: hypothetical protein [Homo sapiens]            32   0.14 
gi|239741430 PREDICTED: hypothetical protein XP_002342198 [Homo ...    32   0.14 
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]         31   0.24 
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    30   0.41 
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    30   0.41 
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    30   0.41 
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]            30   0.41 
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap...    30   0.54 
gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo sap...    30   0.54 
gi|239748993 PREDICTED: hypothetical protein XP_002346876 [Homo ...    30   0.54 
gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo sap...    30   0.54 
gi|239743015 PREDICTED: hypothetical protein XP_002342718 [Homo ...    30   0.54 
gi|19557702 surfeit 6 [Homo sapiens]                                   30   0.54 
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    29   0.70 
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    29   0.70 
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    29   0.70 
gi|27436948 lamin A/C isoform 3 [Homo sapiens]                         29   0.92 

>gi|169208422 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 100

 Score =  220 bits (561), Expect = 2e-58
 Identities = 100/100 (100%), Positives = 100/100 (100%)

Query: 1   MCPILVKIKKLRNKANPWDAEGTLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGP 60
           MCPILVKIKKLRNKANPWDAEGTLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGP
Sbjct: 1   MCPILVKIKKLRNKANPWDAEGTLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGP 60

Query: 61  QWWLPGPWTQGATGFASPLPRKHRRLWGSGGPPALNVDLV 100
           QWWLPGPWTQGATGFASPLPRKHRRLWGSGGPPALNVDLV
Sbjct: 61  QWWLPGPWTQGATGFASPLPRKHRRLWGSGGPPALNVDLV 100


>gi|239745055 PREDICTED: hypothetical protein XP_002343352 [Homo
           sapiens]
          Length = 100

 Score =  220 bits (561), Expect = 2e-58
 Identities = 100/100 (100%), Positives = 100/100 (100%)

Query: 1   MCPILVKIKKLRNKANPWDAEGTLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGP 60
           MCPILVKIKKLRNKANPWDAEGTLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGP
Sbjct: 1   MCPILVKIKKLRNKANPWDAEGTLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGP 60

Query: 61  QWWLPGPWTQGATGFASPLPRKHRRLWGSGGPPALNVDLV 100
           QWWLPGPWTQGATGFASPLPRKHRRLWGSGGPPALNVDLV
Sbjct: 61  QWWLPGPWTQGATGFASPLPRKHRRLWGSGGPPALNVDLV 100


>gi|239753377 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 328

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 15/75 (20%)

Query: 30  ERSPNTRPGQSPETWSVAASGHPAE--GQAGGPQWWLPGP----------WTQGATGFAS 77
           E S   +PG   +  S AA+ H     GQ    QW   GP          WTQG+  F+S
Sbjct: 208 ESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQGSGSFSS 267

Query: 78  PLPRKHRRLWGSGGP 92
           P    + R  GS  P
Sbjct: 268 P---GNHRFLGSNSP 279


>gi|239747944 PREDICTED: hypothetical protein XP_002346483 [Homo
           sapiens]
          Length = 328

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 15/75 (20%)

Query: 30  ERSPNTRPGQSPETWSVAASGHPAE--GQAGGPQWWLPGP----------WTQGATGFAS 77
           E S   +PG   +  S AA+ H     GQ    QW   GP          WTQG+  F+S
Sbjct: 208 ESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQGSGSFSS 267

Query: 78  PLPRKHRRLWGSGGP 92
           P    + R  GS  P
Sbjct: 268 P---GNHRFLGSNSP 279


>gi|239741839 PREDICTED: hypothetical protein XP_002342323 [Homo
           sapiens]
          Length = 281

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 15/75 (20%)

Query: 30  ERSPNTRPGQSPETWSVAASGHPAE--GQAGGPQWWLPGP----------WTQGATGFAS 77
           E S   +PG   +  S AA+ H     GQ    QW   GP          WTQG+  F+S
Sbjct: 161 ESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQGSGSFSS 220

Query: 78  PLPRKHRRLWGSGGP 92
           P    + R  GS  P
Sbjct: 221 P---GNHRFLGSNSP 232


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 28  AGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRLW 87
           AG R P   PG++ E       G P E    GPQ     P T G  GF     R H  L 
Sbjct: 129 AGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKG--IRGHNGLD 186

Query: 88  GSGGPP 93
           G  G P
Sbjct: 187 GLKGQP 192


>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
          Length = 694

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 14/92 (15%)

Query: 18  WDAEG----TLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGAT 73
           WD  G    +  + AG R  N+     P   SV +   P  GQ G P    PGP   G  
Sbjct: 251 WDHSGGAGDSSRSPAGLRRANSVQASRPAPGSVQSPAPPQPGQPGTPGGSRPGPGPAGRF 310

Query: 74  GFASP----------LPRKHRRLWGSGGPPAL 95
               P           P +  R  G GG PA+
Sbjct: 311 PDQKPEVAPSDPGTTAPPREERTGGVGGYPAV 342


>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
          Length = 690

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 14/92 (15%)

Query: 18  WDAEG----TLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGAT 73
           WD  G    +  + AG R  N+     P   SV +   P  GQ G P    PGP   G  
Sbjct: 247 WDHSGGAGDSSRSPAGLRRANSVQASRPAPGSVQSPAPPQPGQPGTPGGSRPGPGPAGRF 306

Query: 74  GFASP----------LPRKHRRLWGSGGPPAL 95
               P           P +  R  G GG PA+
Sbjct: 307 PDQKPEVAPSDPGTTAPPREERTGGVGGYPAV 338


>gi|169179759 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 295

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 39  QSPETWSVAA-SGHPAEGQAG--------GPQWWLPGPWTQGATGFASPLPRKHRRLWGS 89
           ++P+  SV   +G P  GQ G        G   W  GP  +G  G+ +  P + + +WG+
Sbjct: 54  RAPDAGSVCGGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGA 113

Query: 90  GGP 92
           G P
Sbjct: 114 GPP 116


>gi|239746733 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 130

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 11/63 (17%)

Query: 39  QSPETW-----SVAASGHPAEGQAGGP----QWWLPGPWTQGATGFASPLPRKHRRLWGS 89
           Q P+ W     S+ + G   EGQ G P    Q  LP PW Q      S  PRK   + GS
Sbjct: 55  QPPKPWLQTQASLCSQG--PEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGS 112

Query: 90  GGP 92
            GP
Sbjct: 113 QGP 115


>gi|169180158 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 295

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 39  QSPETWSVAA-SGHPAEGQAG--------GPQWWLPGPWTQGATGFASPLPRKHRRLWGS 89
           ++P+  SV   +G P  GQ G        G   W  GP  +G  G+ +  P + + +WG+
Sbjct: 54  RAPDAGSVCGGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGA 113

Query: 90  GGP 92
           G P
Sbjct: 114 GPP 116


>gi|239757723 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 130

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 11/63 (17%)

Query: 39  QSPETW-----SVAASGHPAEGQAGGP----QWWLPGPWTQGATGFASPLPRKHRRLWGS 89
           Q P+ W     S+ + G   EGQ G P    Q  LP PW Q      S  PRK   + GS
Sbjct: 55  QLPKPWLQTQASLCSQG--PEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGS 112

Query: 90  GGP 92
            GP
Sbjct: 113 QGP 115


>gi|239752986 PREDICTED: hypothetical protein XP_002345321 [Homo
           sapiens]
          Length = 424

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 22  GTLMTSAGERSPNTRPGQSPETWSVAASGHPA-EGQA---GGPQWWLPGPWTQGATGFAS 77
           GT + S G RS +  P    E W +  +  P   GQ+    GP    P  W  G T    
Sbjct: 184 GTSLPSVGSRSTSLPP--ESEEWELREAPVPGGRGQSKSPAGPPSAQPRCWLSGHTSQPV 241

Query: 78  PLPRKHRRLW 87
           P+P +   LW
Sbjct: 242 PVPARRPELW 251


>gi|239752210 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 130

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 11/63 (17%)

Query: 39  QSPETW-----SVAASGHPAEGQAGGP----QWWLPGPWTQGATGFASPLPRKHRRLWGS 89
           Q P+ W     S+ + G   EGQ G P    Q  LP PW Q      S  PRK   + GS
Sbjct: 55  QLPKPWLQTQASLCSQG--PEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGS 112

Query: 90  GGP 92
            GP
Sbjct: 113 QGP 115


>gi|239741430 PREDICTED: hypothetical protein XP_002342198 [Homo
           sapiens]
          Length = 424

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 22  GTLMTSAGERSPNTRPGQSPETWSVAASGHPA-EGQA---GGPQWWLPGPWTQGATGFAS 77
           GT + S G RS +  P    E W +  +  P   GQ+    GP    P  W  G T    
Sbjct: 184 GTSLPSVGSRSTSLPP--ESEEWELREAPVPGGRGQSKSPAGPPSAQPRCWLSGHTSQPV 241

Query: 78  PLPRKHRRLW 87
           P+P +   LW
Sbjct: 242 PVPARRPELW 251


>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
          Length = 1690

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 29  GERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPW---TQGATGFASPLPRKHRR 85
           GER P+  PG   +  S    GH  E    GP    PG     T G  GF  PL    + 
Sbjct: 569 GERGPDGPPGFPGQPGSHGRDGHAGEKGDPGP----PGDHEDATPGGKGFPGPLGPPGKA 624

Query: 86  LWGSGGPPAL 95
             G  GPP L
Sbjct: 625 --GPVGPPGL 632


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
           sapiens]
          Length = 1818

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 15/50 (30%), Positives = 22/50 (44%)

Query: 29  GERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASP 78
           GE+ P  +PG +    +    GHP +    G +  L  P  QG  G+  P
Sbjct: 724 GEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGP 773



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 14/57 (24%)

Query: 37   PGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRLWGSGGPP 93
            PGQ  ET     +G P  G   GP         QG TG   P+  +     G  GPP
Sbjct: 960  PGQRGETGFQGKTGPPGPGGVVGP---------QGPTGETGPIGER-----GHPGPP 1002



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 23/67 (34%), Positives = 25/67 (37%), Gaps = 17/67 (25%)

Query: 27  SAGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRL 86
           S G R P  +PG    +      G P E    GPQ    GP  QG  GF  P        
Sbjct: 902 SRGARGPTGKPGPKGTSGGDGPPGPPGE---RGPQ----GP--QGPVGFPGPK------- 945

Query: 87  WGSGGPP 93
            G  GPP
Sbjct: 946 -GPPGPP 951


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
           sapiens]
          Length = 1767

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 15/50 (30%), Positives = 22/50 (44%)

Query: 29  GERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASP 78
           GE+ P  +PG +    +    GHP +    G +  L  P  QG  G+  P
Sbjct: 673 GEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGP 722



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 14/57 (24%)

Query: 37  PGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRLWGSGGPP 93
           PGQ  ET     +G P  G   GP         QG TG   P+  +     G  GPP
Sbjct: 909 PGQRGETGFQGKTGPPGPGGVVGP---------QGPTGETGPIGER-----GHPGPP 951



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 23/67 (34%), Positives = 25/67 (37%), Gaps = 17/67 (25%)

Query: 27  SAGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRL 86
           S G R P  +PG    +      G P E    GPQ    GP  QG  GF  P        
Sbjct: 851 SRGARGPTGKPGPKGTSGGDGPPGPPGE---RGPQ----GP--QGPVGFPGPK------- 894

Query: 87  WGSGGPP 93
            G  GPP
Sbjct: 895 -GPPGPP 900


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
           sapiens]
          Length = 1806

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 15/50 (30%), Positives = 22/50 (44%)

Query: 29  GERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASP 78
           GE+ P  +PG +    +    GHP +    G +  L  P  QG  G+  P
Sbjct: 712 GEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGP 761



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 14/57 (24%)

Query: 37  PGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRLWGSGGPP 93
           PGQ  ET     +G P  G   GP         QG TG   P+  +     G  GPP
Sbjct: 948 PGQRGETGFQGKTGPPGPGGVVGP---------QGPTGETGPIGER-----GHPGPP 990



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 23/67 (34%), Positives = 25/67 (37%), Gaps = 17/67 (25%)

Query: 27  SAGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRL 86
           S G R P  +PG    +      G P E    GPQ    GP  QG  GF  P        
Sbjct: 890 SRGARGPTGKPGPKGTSGGDGPPGPPGE---RGPQ----GP--QGPVGFPGPK------- 933

Query: 87  WGSGGPP 93
            G  GPP
Sbjct: 934 -GPPGPP 939


>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 480

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 21  EGTLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLP------GPWTQGATG 74
           E  L + A    P   PG         A+G P  G  GG +   P      G    GA G
Sbjct: 232 EPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALG 291

Query: 75  FASPLPRKHRRLWGSGG 91
            A+P  R  +  WG  G
Sbjct: 292 RAAPPSRARQDAWGLSG 308


>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
           sapiens]
          Length = 329

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 28/79 (35%)

Query: 15  ANPWDAEGTLMTSAGERSP----NTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQ 70
           A P  AE  L   AG   P     T   +S  TW          G   GP W    PW +
Sbjct: 274 ALPGTAEDALEPEAGPEDPAEAERTLDRRSDGTW----------GTEAGPGW---APWPR 320

Query: 71  GATGFASPLPRKHRRLWGS 89
           GA           RRLWGS
Sbjct: 321 GA-----------RRLWGS 328


>gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo
           sapiens]
          Length = 329

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 28/79 (35%)

Query: 15  ANPWDAEGTLMTSAGERSP----NTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQ 70
           A P  AE  L   AG   P     T   +S  TW          G   GP W    PW +
Sbjct: 274 ALPGTAEDALEPEAGPEDPAEAERTLDRRSDGTW----------GTEAGPGW---APWPR 320

Query: 71  GATGFASPLPRKHRRLWGS 89
           GA           RRLWGS
Sbjct: 321 GA-----------RRLWGS 328


>gi|239748993 PREDICTED: hypothetical protein XP_002346876 [Homo
           sapiens]
          Length = 552

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 30  ERSPNTRPGQSPETWSVAASGHPAEGQA----GGPQWWLPGPWTQGATGFASPLPRKHRR 85
           E  P+      PE W         EG        P  W PGP   G     +  P  H+ 
Sbjct: 285 ETGPSRGQKAQPEGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQA 344

Query: 86  LWGSG 90
            W SG
Sbjct: 345 AWLSG 349


>gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo
           sapiens]
          Length = 329

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 28/79 (35%)

Query: 15  ANPWDAEGTLMTSAGERSP----NTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQ 70
           A P  AE  L   AG   P     T   +S  TW          G   GP W    PW +
Sbjct: 274 ALPGTAEDALEPEAGPEDPAEAERTLDRRSDGTW----------GTEAGPGW---APWPR 320

Query: 71  GATGFASPLPRKHRRLWGS 89
           GA           RRLWGS
Sbjct: 321 GA-----------RRLWGS 328


>gi|239743015 PREDICTED: hypothetical protein XP_002342718 [Homo
           sapiens]
          Length = 552

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 30  ERSPNTRPGQSPETWSVAASGHPAEGQA----GGPQWWLPGPWTQGATGFASPLPRKHRR 85
           E  P+      PE W         EG        P  W PGP   G     +  P  H+ 
Sbjct: 285 ETGPSRGQKAQPEGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQA 344

Query: 86  LWGSG 90
            W SG
Sbjct: 345 AWLSG 349


>gi|19557702 surfeit 6 [Homo sapiens]
          Length = 361

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)

Query: 7   KIKKLRNKANPWDAEGTLMTSAGERSPNTRPGQSPET------WSVAASGHPAEGQAGGP 60
           K +K   KA    A+     S GE+SP     + PE       W+ +++G+PA+G A  P
Sbjct: 54  KFRKREEKAAEHKAK-----SLGEKSPAASGARRPEAAKEEAAWASSSAGNPADGLATEP 108

Query: 61  Q 61
           +
Sbjct: 109 E 109


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 12  RNKANPWDAEGTLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQG 71
           + +A P  A G      G + P   PG         ASG+P      G +     P   G
Sbjct: 374 KGEAGPTGARGP----EGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAG 429

Query: 72  ATGFASPLPRKHRRLWGSGGP 92
           A GF  P PR      G+ GP
Sbjct: 430 APGF--PGPRGPPGPQGATGP 448



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 6/46 (13%)

Query: 29  GERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATG 74
           G R    RPG +     V  SG P E    GP    PGP  QGA G
Sbjct: 558 GARGLTGRPGDAGPQGKVGPSGAPGEDGRPGP----PGP--QGARG 597



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 24/66 (36%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 28  AGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRLW 87
           AGER     PG S         G P EG   G Q  +PG    GA G     PR  R   
Sbjct: 650 AGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQ-GVPG--EAGAPGLVG--PRGERGFP 704

Query: 88  GSGGPP 93
           G  G P
Sbjct: 705 GERGSP 710


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 12  RNKANPWDAEGTLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQG 71
           + +A P  A G      G + P   PG         ASG+P      G +     P   G
Sbjct: 305 KGEAGPTGARGP----EGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAG 360

Query: 72  ATGFASPLPRKHRRLWGSGGP 92
           A GF  P PR      G+ GP
Sbjct: 361 APGF--PGPRGPPGPQGATGP 379



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 6/46 (13%)

Query: 29  GERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATG 74
           G R    RPG +     V  SG P E    GP    PGP  QGA G
Sbjct: 489 GARGLTGRPGDAGPQGKVGPSGAPGEDGRPGP----PGP--QGARG 528



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 24/66 (36%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 28  AGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRLW 87
           AGER     PG S         G P EG   G Q  +PG    GA G     PR  R   
Sbjct: 581 AGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQ-GVPG--EAGAPGLVG--PRGERGFP 635

Query: 88  GSGGPP 93
           G  G P
Sbjct: 636 GERGSP 641


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 29   GERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRLWG 88
            G+  P    G       V A+G P E    GP   +  P   G+ G   P  +K  R  G
Sbjct: 986  GDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSR--G 1043

Query: 89   SGGPP 93
              GPP
Sbjct: 1044 ERGPP 1048



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 29  GERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPG----PWTQGATGFASPL-PRKH 83
           G   P  + GQ+ E     ++G   +G+ G P   LPG    P  +G+ GF  PL P   
Sbjct: 761 GPEGPKGQAGQAGEEGPPGSAGE--KGKLGVPG--LPGYPGRPGPKGSIGFPGPLGPIGE 816

Query: 84  RRLWGSGGPPAL 95
           +   G  G P L
Sbjct: 817 KGKSGKTGQPGL 828


>gi|27436948 lamin A/C isoform 3 [Homo sapiens]
          Length = 634

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 11/87 (12%)

Query: 16  NPWDAEGTLMT----SAGERSPNTRPGQSPE------TWSVAASGHPAE-GQAGGPQWWL 64
           N W    +L T    S GE S  +  G   E      T      G PA+   A G    +
Sbjct: 518 NTWGCGNSLRTALINSTGEGSHCSSSGDPAEYNLRSRTVLCGTCGQPADKASASGSGAQV 577

Query: 65  PGPWTQGATGFASPLPRKHRRLWGSGG 91
            GP + G++  +  + R +R + GSGG
Sbjct: 578 GGPISSGSSASSVTVTRSYRSVGGSGG 604


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.133    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,691,570
Number of Sequences: 37866
Number of extensions: 336996
Number of successful extensions: 1101
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 1001
Number of HSP's gapped (non-prelim): 191
length of query: 100
length of database: 18,247,518
effective HSP length: 71
effective length of query: 29
effective length of database: 15,559,032
effective search space: 451211928
effective search space used: 451211928
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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