Guide to the Human Genome
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Name: LOC100288531 Sequence: fasta or formatted (143aa) NCBI GI: 239745034
Description:

PREDICTED: hypothetical protein XP_002343337

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         14           2
 C cysteine            6.3          9           1
 D aspartate           6.3          9           1
 E glutamate           1.4          2           1
 F phenylalanine       1.4          2           1
 G glycine             2.1          3           1
 H histidine           4.9          7           2
 I isoleucine          3.5          5           1
 K lysine              0.7          1           1
 L leucine            16.1         23           2
 M methionine          2.8          4           1
 N asparagine          0.0          0           0
 P proline            12.6         18           2
 Q glutamine           2.8          4           1
 R arginine            2.1          3           1
 S serine             21.0         30           2
 T threonine           4.2          6           1
 V valine              1.4          2           1
 W tryptophan          0.7          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343337 
LOC100289830          0.322   PREDICTED: hypothetical protein XP_002347519 
MUC4                  0.070   mucin 4 isoform a 
PDCD6IP               0.033   programmed cell death 6 interacting protein isoform...
PDCD6IP               0.033   programmed cell death 6 interacting protein isoform ...
FLJ22184              0.030   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.030   PREDICTED: hypothetical protein LOC80164 
MYST3                 0.030   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.030   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.030   MYST histone acetyltransferase (monocytic leukemia)...
MYST4                 0.030   MYST histone acetyltransferase (monocytic leukemia)...
CUX1                  0.030   cut-like homeobox 1 isoform a 
MLL2                  0.030   myeloid/lymphoid or mixed-lineage leukemia 2 
KIAA1804              0.026   mixed lineage kinase 4 
KIAA0913              0.026   hypothetical protein LOC23053 
KIAA1522              0.026   hypothetical protein LOC57648 
FLJ22184              0.026   PREDICTED: hypothetical protein FLJ22184 
GSG2                  0.026   haspin 
MEGF9                 0.026   multiple EGF-like-domains 9 
C17orf65              0.026   hypothetical protein LOC339201 
NCF4                  0.022   neutrophil cytosolic factor 4 isoform 2 
LOC100292453          0.022   PREDICTED: hypothetical protein 
LOC100288612          0.022   PREDICTED: hypothetical protein 
LOC100288612          0.022   PREDICTED: hypothetical protein XP_002342081 
ADAM15                0.022   a disintegrin and metalloproteinase domain 15 isofor...
MEGF11                0.022   multiple EGF-like-domains 11 
LOC100132635          0.019   PREDICTED: similar to mucin 5, partial 
EIF2AK3               0.019   eukaryotic translation initiation factor 2-alpha ki...
MAGEC1                0.019   melanoma antigen family C, 1 
PRDM2                 0.019   retinoblastoma protein-binding zinc finger protein i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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