Search of human proteins with 239744931

Search of human proteins with 239744931

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744931 PREDICTED: hypothetical protein XP_002343311 [Homo
sapiens]
         (173 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239744931 PREDICTED: hypothetical protein XP_002343311 [Homo ...   351   2e-97
gi|239756093 PREDICTED: hypothetical protein [Homo sapiens]           180   6e-46
gi|239750624 PREDICTED: hypothetical protein XP_002347476 [Homo ...   180   6e-46
gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens]     37   0.007
gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens]     37   0.007
gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isof...    37   0.007
gi|16332364 cell division cycle 2-like 1 (PITSLRE proteins) isof...    37   0.007
gi|16332362 cell division cycle 2-like 1 (PITSLRE proteins) isof...    37   0.007
gi|16332358 cell division cycle 2-like 1 (PITSLRE proteins) isof...    37   0.007
gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isof...    35   0.042
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]           32   0.21 
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]           32   0.21 
gi|156119615 myosin IXA [Homo sapiens]                                 32   0.36 
gi|46309849 hypothetical protein LOC57035 [Homo sapiens]               32   0.36 
gi|224028248 non-POU domain containing, octamer-binding isoform ...    31   0.47 
gi|224028246 non-POU domain containing, octamer-binding isoform ...    31   0.47 
gi|224028244 non-POU domain containing, octamer-binding isoform ...    31   0.47 
gi|34932414 non-POU domain containing, octamer-binding isoform 1...    31   0.47 
gi|131888281 hypothetical protein LOC55216 isoform b [Homo sapiens]    31   0.47 
gi|131889432 hypothetical protein LOC55216 isoform a [Homo sapiens]    31   0.47 
gi|131889391 hypothetical protein LOC55216 isoform a [Homo sapiens]    31   0.47 
gi|38348282 RUN and FYVE domain containing 4 [Homo sapiens]            31   0.47 
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi...    31   0.61 
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]           31   0.61 
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]           31   0.61 
gi|18426913 drebrin 1 isoform b [Homo sapiens]                         30   0.80 
gi|18426915 drebrin 1 isoform a [Homo sapiens]                         30   0.80 
gi|22547146 F-box and leucine-rich repeat protein 8 [Homo sapiens]     30   0.80 
gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...    30   1.0  
gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...    30   1.0  

>gi|239744931 PREDICTED: hypothetical protein XP_002343311 [Homo
           sapiens]
          Length = 173

 Score =  351 bits (900), Expect = 2e-97
 Identities = 173/173 (100%), Positives = 173/173 (100%)

Query: 1   MRHSDSQAWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTIRSSE 60
           MRHSDSQAWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTIRSSE
Sbjct: 1   MRHSDSQAWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTIRSSE 60

Query: 61  KQTKRMRRKRRKVMLYVMARAGGLKGDKSEALKCQNRLPHLDDEVGEKNQEGAGFIVFEG 120
           KQTKRMRRKRRKVMLYVMARAGGLKGDKSEALKCQNRLPHLDDEVGEKNQEGAGFIVFEG
Sbjct: 61  KQTKRMRRKRRKVMLYVMARAGGLKGDKSEALKCQNRLPHLDDEVGEKNQEGAGFIVFEG 120

Query: 121 GDCRESPTSFSISFSLKYSVSGLKSFDCFHCLVGVELLNDLEELGIPGVQFII 173
           GDCRESPTSFSISFSLKYSVSGLKSFDCFHCLVGVELLNDLEELGIPGVQFII
Sbjct: 121 GDCRESPTSFSISFSLKYSVSGLKSFDCFHCLVGVELLNDLEELGIPGVQFII 173


>gi|239756093 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 343

 Score =  180 bits (456), Expect = 6e-46
 Identities = 105/169 (62%), Positives = 111/169 (65%), Gaps = 39/169 (23%)

Query: 5   DSQAWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTIRSSEKQTK 64
           D+  W    RE    SH   + S S +++ R       PS       +HLTIRSSEKQTK
Sbjct: 214 DTPLW----REHGHLSHGAGAPS-SGQVVTRAPAYHFHPS-------AHLTIRSSEKQTK 261

Query: 65  RMRRKRRKVMLYVMARAGGLKGDKSEALKCQNRLPHLDDEVGEKNQEGAGFIVFEGGDCR 124
           RMRRKRRK                           HLDDEVGEKNQEGAGFIVFEGGDCR
Sbjct: 262 RMRRKRRK---------------------------HLDDEVGEKNQEGAGFIVFEGGDCR 294

Query: 125 ESPTSFSISFSLKYSVSGLKSFDCFHCLVGVELLNDLEELGIPGVQFII 173
           ESPTSFSISFSLKYSVSGLKSFDCFHCLVGVELLNDLEELGIPGVQFII
Sbjct: 295 ESPTSFSISFSLKYSVSGLKSFDCFHCLVGVELLNDLEELGIPGVQFII 343


>gi|239750624 PREDICTED: hypothetical protein XP_002347476 [Homo
           sapiens]
          Length = 343

 Score =  180 bits (456), Expect = 6e-46
 Identities = 105/169 (62%), Positives = 111/169 (65%), Gaps = 39/169 (23%)

Query: 5   DSQAWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTIRSSEKQTK 64
           D+  W    RE    SH   + S S +++ R       PS       +HLTIRSSEKQTK
Sbjct: 214 DTPLW----REHGHLSHGAGAPS-SGQVVTRAPAYHFHPS-------AHLTIRSSEKQTK 261

Query: 65  RMRRKRRKVMLYVMARAGGLKGDKSEALKCQNRLPHLDDEVGEKNQEGAGFIVFEGGDCR 124
           RMRRKRRK                           HLDDEVGEKNQEGAGFIVFEGGDCR
Sbjct: 262 RMRRKRRK---------------------------HLDDEVGEKNQEGAGFIVFEGGDCR 294

Query: 125 ESPTSFSISFSLKYSVSGLKSFDCFHCLVGVELLNDLEELGIPGVQFII 173
           ESPTSFSISFSLKYSVSGLKSFDCFHCLVGVELLNDLEELGIPGVQFII
Sbjct: 295 ESPTSFSISFSLKYSVSGLKSFDCFHCLVGVELLNDLEELGIPGVQFII 343


>gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens]
          Length = 770

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 14/102 (13%)

Query: 2   RHSDSQ-----AWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTI 56
           RH + Q      WE +KR + A  HSR       +L  RKRE+ERK   QQ  +      
Sbjct: 124 RHREEQDKARREWERQKRREMAREHSRRERDRLEQLE-RKRERERKMREQQKEQ------ 176

Query: 57  RSSEKQTKRM--RRKRRKVMLYVMARAGGLKGDKSEALKCQN 96
           R  +++ +R   RRK R+    V A    ++ D S+ +K  +
Sbjct: 177 REQKERERRAEERRKEREARREVSAHHRTMREDYSDKVKASH 218


>gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens]
          Length = 780

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 14/102 (13%)

Query: 2   RHSDSQ-----AWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTI 56
           RH + Q      WE +KR + A  HSR       +L  RKRE+ERK   QQ  +      
Sbjct: 134 RHREEQDKARREWERQKRREMAREHSRRERDRLEQLE-RKRERERKMREQQKEQ------ 186

Query: 57  RSSEKQTKRM--RRKRRKVMLYVMARAGGLKGDKSEALKCQN 96
           R  +++ +R   RRK R+    V A    ++ D S+ +K  +
Sbjct: 187 REQKERERRAEERRKEREARREVSAHHRTMREDYSDKVKASH 228


>gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isoform
           9 [Homo sapiens]
          Length = 771

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 14/102 (13%)

Query: 2   RHSDSQ-----AWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTI 56
           RH + Q      WE +KR + A  HSR       +L  RKRE+ERK   QQ  +      
Sbjct: 125 RHREEQDKARREWERQKRREMAREHSRRERDRLEQLE-RKRERERKMREQQKEQ------ 177

Query: 57  RSSEKQTKRM--RRKRRKVMLYVMARAGGLKGDKSEALKCQN 96
           R  +++ +R   RRK R+    V A    ++ D S+ +K  +
Sbjct: 178 REQKERERRAEERRKEREARREVSAHHRTMREDYSDKVKASH 219


>gi|16332364 cell division cycle 2-like 1 (PITSLRE proteins) isoform
           5 [Homo sapiens]
          Length = 748

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 14/102 (13%)

Query: 2   RHSDSQ-----AWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTI 56
           RH + Q      WE +KR + A  HSR       +L  RKRE+ERK   QQ  +      
Sbjct: 102 RHREEQDKARREWERQKRREMAREHSRRERDRLEQLE-RKRERERKMREQQKEQ------ 154

Query: 57  RSSEKQTKRM--RRKRRKVMLYVMARAGGLKGDKSEALKCQN 96
           R  +++ +R   RRK R+    V A    ++ D S+ +K  +
Sbjct: 155 REQKERERRAEERRKEREARREVSAHHRTMREDYSDKVKASH 196


>gi|16332362 cell division cycle 2-like 1 (PITSLRE proteins) isoform
           4 [Homo sapiens]
          Length = 737

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 14/102 (13%)

Query: 2   RHSDSQ-----AWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTI 56
           RH + Q      WE +KR + A  HSR       +L  RKRE+ERK   QQ  +      
Sbjct: 91  RHREEQDKARREWERQKRREMAREHSRRERDRLEQLE-RKRERERKMREQQKEQ------ 143

Query: 57  RSSEKQTKRM--RRKRRKVMLYVMARAGGLKGDKSEALKCQN 96
           R  +++ +R   RRK R+    V A    ++ D S+ +K  +
Sbjct: 144 REQKERERRAEERRKEREARREVSAHHRTMREDYSDKVKASH 185


>gi|16332358 cell division cycle 2-like 1 (PITSLRE proteins) isoform
           2 [Homo sapiens]
          Length = 782

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 14/102 (13%)

Query: 2   RHSDSQ-----AWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTI 56
           RH + Q      WE +KR + A  HSR       +L  RKRE+ERK   QQ  +      
Sbjct: 136 RHREEQDKARREWERQKRREMAREHSRRERDRLEQLE-RKRERERKMREQQKEQ------ 188

Query: 57  RSSEKQTKRM--RRKRRKVMLYVMARAGGLKGDKSEALKCQN 96
           R  +++ +R   RRK R+    V A    ++ D S+ +K  +
Sbjct: 189 REQKERERRAEERRKEREARREVSAHHRTMREDYSDKVKASH 230


>gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isoform
           8 [Homo sapiens]
          Length = 780

 Score = 34.7 bits (78), Expect = 0.042
 Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 21/110 (19%)

Query: 2   RHSDSQ-----AWECRKREQDAASHSRSSSS------FSSKL--MCRKREQERKPSVQQC 48
           RH + Q      WE +KR + A  HSR          F  +L  + RKRE+ERK   QQ 
Sbjct: 125 RHREEQDKARREWERQKRREMAREHSRRERGNDGVCLFRDRLEQLERKRERERKMREQQK 184

Query: 49  MEYSHLTIRSSEKQTKRM--RRKRRKVMLYVMARAGGLKGDKSEALKCQN 96
            +      R  +++ +R   RRK R+    V A    ++ D S+ +K  +
Sbjct: 185 EQ------REQKERERRAEERRKEREARREVSAHHRTMREDYSDKVKASH 228


>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
          Length = 330

 Score = 32.3 bits (72), Expect = 0.21
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 12  RKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTIRSSEKQTKRMRRKRR 71
           R R +  +SHSRSSS  SS    R R + R  S       S    RSS ++  R R  + 
Sbjct: 201 RSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRS----RSSSRERSRSRGSKS 256

Query: 72  K 72
           +
Sbjct: 257 R 257


>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
          Length = 320

 Score = 32.3 bits (72), Expect = 0.21
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 12  RKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTIRSSEKQTKRMRRKRR 71
           R R +  +SHSRSSS  SS    R R + R  S       S    RSS ++  R R  + 
Sbjct: 201 RSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRS----RSSSRERSRSRGSKS 256

Query: 72  K 72
           +
Sbjct: 257 R 257


>gi|156119615 myosin IXA [Homo sapiens]
          Length = 2548

 Score = 31.6 bits (70), Expect = 0.36
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 61   KQTKRMRRKRRKVMLYVMARAGGLKGDKSEALKCQNRLPHLDDEVGEKNQEGAGFIVFEG 120
            +++KR + +R+K++L      G     + +ALK + RL     EVG  N +G G +  +G
Sbjct: 1130 RESKRYQEQRKKIILLQSTCRGFRARQRFKALK-EQRLRETKPEVGLVNIKGYGSLEIQG 1188

Query: 121  GD 122
             D
Sbjct: 1189 SD 1190


>gi|46309849 hypothetical protein LOC57035 [Homo sapiens]
          Length = 290

 Score = 31.6 bits (70), Expect = 0.36
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 12 RKREQDAASHSRSSSSFSSK-LMCRKREQERKPSVQQCMEYSHLTIRSSEKQTKRMRRKR 70
          R   + + SHSR SS FSS+    + R + R+   ++   YS    RS  +   R  R+R
Sbjct: 37 RSFSRSSRSHSRVSSRFSSRSRRSKSRSRSRRRHQRKYRRYSRSYSRSRSRSRSRRYRER 96

Query: 71 R 71
          R
Sbjct: 97 R 97


>gi|224028248 non-POU domain containing, octamer-binding isoform 2
           [Homo sapiens]
          Length = 382

 Score = 31.2 bits (69), Expect = 0.47
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 7   QAWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSV--QQCMEYSHLTIRSSEKQTK 64
           +A E  + E +AA H          LM R+ E  R   +  Q+  +   L +R  E++ +
Sbjct: 202 EAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRR 261

Query: 65  RMRRKRRKVMLYVMARAGGLKGDKSEALKCQNRL 98
           R    RR+    +  +  G KG   +A + + R+
Sbjct: 262 REEEMRRQQEEMMRRQQEGFKGTFPDAREQEIRM 295


>gi|224028246 non-POU domain containing, octamer-binding isoform 1
           [Homo sapiens]
          Length = 471

 Score = 31.2 bits (69), Expect = 0.47
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 7   QAWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSV--QQCMEYSHLTIRSSEKQTK 64
           +A E  + E +AA H          LM R+ E  R   +  Q+  +   L +R  E++ +
Sbjct: 291 EAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRR 350

Query: 65  RMRRKRRKVMLYVMARAGGLKGDKSEALKCQNRL 98
           R    RR+    +  +  G KG   +A + + R+
Sbjct: 351 REEEMRRQQEEMMRRQQEGFKGTFPDAREQEIRM 384


>gi|224028244 non-POU domain containing, octamer-binding isoform 1
           [Homo sapiens]
          Length = 471

 Score = 31.2 bits (69), Expect = 0.47
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 7   QAWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSV--QQCMEYSHLTIRSSEKQTK 64
           +A E  + E +AA H          LM R+ E  R   +  Q+  +   L +R  E++ +
Sbjct: 291 EAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRR 350

Query: 65  RMRRKRRKVMLYVMARAGGLKGDKSEALKCQNRL 98
           R    RR+    +  +  G KG   +A + + R+
Sbjct: 351 REEEMRRQQEEMMRRQQEGFKGTFPDAREQEIRM 384


>gi|34932414 non-POU domain containing, octamer-binding isoform 1
           [Homo sapiens]
          Length = 471

 Score = 31.2 bits (69), Expect = 0.47
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 7   QAWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSV--QQCMEYSHLTIRSSEKQTK 64
           +A E  + E +AA H          LM R+ E  R   +  Q+  +   L +R  E++ +
Sbjct: 291 EAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRR 350

Query: 65  RMRRKRRKVMLYVMARAGGLKGDKSEALKCQNRL 98
           R    RR+    +  +  G KG   +A + + R+
Sbjct: 351 REEEMRRQQEEMMRRQQEGFKGTFPDAREQEIRM 384


>gi|131888281 hypothetical protein LOC55216 isoform b [Homo sapiens]
          Length = 292

 Score = 31.2 bits (69), Expect = 0.47
 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 6   SQAWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTIRSSEKQTKR 65
           S   E RK ++   SH +     S K   + +++    +     E+S  T  S  ++ K+
Sbjct: 142 SSTHESRKHKKSKKSHKKKQKKRSHKKQKKSKKEATDITADSSSEFSEETGASGTRKGKQ 201

Query: 66  MRRKRRKVMLYVMARAGGLKGDKSEALKCQNRLPHLDDEVGEKNQE 111
             ++++K      +R   LK   +  L+ ++   H DD     ++E
Sbjct: 202 PHKRKKK------SRKKSLK-KPALFLEAESNTSHSDDSASSSSEE 240


>gi|131889432 hypothetical protein LOC55216 isoform a [Homo sapiens]
          Length = 293

 Score = 31.2 bits (69), Expect = 0.47
 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 6   SQAWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTIRSSEKQTKR 65
           S   E RK ++   SH +     S K   + +++    +     E+S  T  S  ++ K+
Sbjct: 143 SSTHESRKHKKSKKSHKKKQKKRSHKKQKKSKKEATDITADSSSEFSEETGASGTRKGKQ 202

Query: 66  MRRKRRKVMLYVMARAGGLKGDKSEALKCQNRLPHLDDEVGEKNQE 111
             ++++K      +R   LK   +  L+ ++   H DD     ++E
Sbjct: 203 PHKRKKK------SRKKSLK-KPALFLEAESNTSHSDDSASSSSEE 241


>gi|131889391 hypothetical protein LOC55216 isoform a [Homo sapiens]
          Length = 293

 Score = 31.2 bits (69), Expect = 0.47
 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 6   SQAWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTIRSSEKQTKR 65
           S   E RK ++   SH +     S K   + +++    +     E+S  T  S  ++ K+
Sbjct: 143 SSTHESRKHKKSKKSHKKKQKKRSHKKQKKSKKEATDITADSSSEFSEETGASGTRKGKQ 202

Query: 66  MRRKRRKVMLYVMARAGGLKGDKSEALKCQNRLPHLDDEVGEKNQE 111
             ++++K      +R   LK   +  L+ ++   H DD     ++E
Sbjct: 203 PHKRKKK------SRKKSLK-KPALFLEAESNTSHSDDSASSSSEE 241


>gi|38348282 RUN and FYVE domain containing 4 [Homo sapiens]
          Length = 398

 Score = 31.2 bits (69), Expect = 0.47
 Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 7/76 (9%)

Query: 36  KREQERKPSVQQCMEYSHLTIRSSEKQTKRMRRKRRKVMLYVMARAGGLKGDKSEALKCQ 95
           +RE++ + S+Q  ++   L +R +E+Q +R  +  R+       + G L+  + +  +CQ
Sbjct: 229 RREEQAEVSLQDEIKSLRLGLRKAEEQAQRQEQLLRE-------QEGELQALREQLSRCQ 281

Query: 96  NRLPHLDDEVGEKNQE 111
                L  ++ +K QE
Sbjct: 282 EERAELQAQLEQKQQE 297


>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
           sapiens]
          Length = 437

 Score = 30.8 bits (68), Expect = 0.61
 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 9/103 (8%)

Query: 12  RKREQDAASHSRSSSSFSSKLMCRKRE-QERKPSVQQCMEYSHLTIRSSEKQTKRMRRKR 70
           R RE+D     R S S   +   R R+ +ER+ S ++  +      R S +  +R RR+R
Sbjct: 244 RSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRER 303

Query: 71  -RKVMLYVMARAGGLKGDKSEALKCQNRLPHLDDEVGEKNQEG 112
            RK  L    R GG  GD +E  +  +  P  D   GE   +G
Sbjct: 304 ERKEEL----RGGG--GDMAEPSEAGDAPPD-DGPPGELGPDG 339


>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
          Length = 2426

 Score = 30.8 bits (68), Expect = 0.61
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 12   RKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTIRSSEKQTKRMRRKRR 71
            +++++D++  SRS  S SS+   RKR  E +   ++    S  + RS  +   R RR+RR
Sbjct: 1814 KEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSK-SHRSQTRSRSRSRRRRR 1872


>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
          Length = 2303

 Score = 30.8 bits (68), Expect = 0.61
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 12   RKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTIRSSEKQTKRMRRKRR 71
            +++++D++  SRS  S SS+   RKR  E +   ++    S  + RS  +   R RR+RR
Sbjct: 1814 KEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSK-SHRSQTRSRSRSRRRRR 1872


>gi|18426913 drebrin 1 isoform b [Homo sapiens]
          Length = 651

 Score = 30.4 bits (67), Expect = 0.80
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 2   RHSDSQAWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTIRSSEK 61
           R +  Q WE  K+E++         +   +L   + EQER    +Q  E      R  E+
Sbjct: 176 RINREQFWEQAKKEEELRKEEERKKALDERL---RFEQERMEQERQEQEERERRYREREQ 232

Query: 62  QTKRMRRKRR 71
           Q +  RRK++
Sbjct: 233 QIEEHRRKQQ 242


>gi|18426915 drebrin 1 isoform a [Homo sapiens]
          Length = 649

 Score = 30.4 bits (67), Expect = 0.80
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 2   RHSDSQAWECRKREQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTIRSSEK 61
           R +  Q WE  K+E++         +   +L   + EQER    +Q  E      R  E+
Sbjct: 174 RINREQFWEQAKKEEELRKEEERKKALDERL---RFEQERMEQERQEQEERERRYREREQ 230

Query: 62  QTKRMRRKRR 71
           Q +  RRK++
Sbjct: 231 QIEEHRRKQQ 240


>gi|22547146 F-box and leucine-rich repeat protein 8 [Homo sapiens]
          Length = 374

 Score = 30.4 bits (67), Expect = 0.80
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 18  AASHSRSSSSFSSKLMCR-KREQERKPSVQQCMEYSHLTIRSSEKQTKRMRRKRRKVMLY 76
           AA+ + S+    +K+ C  + E    P +  C+++ H      E   K  RR   ++++ 
Sbjct: 36  AAAATCSAVWHDTKISCECELEGMLPPYLSACLDHIHNLRLEFEPSRKPSRRAAIELLMV 95

Query: 77  VMARAGGLKGDKSEALKCQNRLPHLD 102
           +  RA GL+G +   L+C+   P  D
Sbjct: 96  LAGRAPGLRGLR---LECRGEKPLFD 118


>gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
           isoform 2 [Homo sapiens]
          Length = 2472

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 11/111 (9%)

Query: 3   HSDSQAWECRK-----REQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTIR 57
           H  +Q WE  K     R QD     ++   F+         +E++P V    +Y      
Sbjct: 866 HELNQKWEALKAKASQRRQDLEDSLQAQQYFADANEAESWMREKEPIVGST-DYG----- 919

Query: 58  SSEKQTKRMRRKRRKVMLYVMARAGGLKGDKSEALKCQNRLPHLDDEVGEK 108
             E   + + +K   +M  + A    ++  + +A  C+ ++   DDE G++
Sbjct: 920 KDEDSAEALLKKHEALMSDLSAYGSSIQALREQAQSCRQQVAPTDDETGKE 970


>gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
           isoform 1 [Homo sapiens]
          Length = 2477

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 11/111 (9%)

Query: 3   HSDSQAWECRK-----REQDAASHSRSSSSFSSKLMCRKREQERKPSVQQCMEYSHLTIR 57
           H  +Q WE  K     R QD     ++   F+         +E++P V    +Y      
Sbjct: 866 HELNQKWEALKAKASQRRQDLEDSLQAQQYFADANEAESWMREKEPIVGST-DYG----- 919

Query: 58  SSEKQTKRMRRKRRKVMLYVMARAGGLKGDKSEALKCQNRLPHLDDEVGEK 108
             E   + + +K   +M  + A    ++  + +A  C+ ++   DDE G++
Sbjct: 920 KDEDSAEALLKKHEALMSDLSAYGSSIQALREQAQSCRQQVAPTDDETGKE 970


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,793,122
Number of Sequences: 37866
Number of extensions: 290936
Number of successful extensions: 1255
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1121
Number of HSP's gapped (non-prelim): 166
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.