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Search of human proteins with 239744816
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744816 PREDICTED: hypothetical protein XP_002343280 [Homo
sapiens]
(53 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755989 PREDICTED: hypothetical protein [Homo sapiens] 108 7e-25
gi|239750521 PREDICTED: hypothetical protein [Homo sapiens] 108 7e-25
gi|239744816 PREDICTED: hypothetical protein XP_002343280 [Homo ... 108 7e-25
gi|239754468 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo ... 31 0.24
gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo ... 31 0.24
gi|38016943 calcium release-activated calcium channel protein 1 ... 30 0.41
gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens] 29 0.70
gi|169208488 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239754838 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|239749375 PREDICTED: hypothetical protein XP_002347018 [Homo ... 28 1.6
gi|239743512 PREDICTED: hypothetical protein XP_002342879 [Homo ... 28 1.6
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens] 27 2.6
gi|239740896 PREDICTED: hypothetical protein XP_002344079 [Homo ... 27 2.6
gi|239756902 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|169167740 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|169167057 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|239751398 PREDICTED: hypothetical protein XP_002347837 [Homo ... 27 4.5
gi|113416994 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo ... 27 4.5
gi|239745907 PREDICTED: hypothetical protein XP_002343614 [Homo ... 27 4.5
gi|113416470 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|239741505 PREDICTED: hypothetical protein XP_002342218 [Homo ... 27 4.5
gi|41281683 disabled homolog 2 interacting protein isoform 2 [Ho... 27 4.5
gi|94967023 disabled homolog 2 interacting protein isoform 1 [Ho... 27 4.5
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 27 4.5
gi|182765466 FCH and double SH3 domains 2 [Homo sapiens] 27 4.5
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 27 4.5
gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens] 26 5.9
gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens] 26 5.9
>gi|239755989 PREDICTED: hypothetical protein [Homo sapiens]
Length = 53
Score = 108 bits (271), Expect = 7e-25
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MLLLRRKASLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARRPRV 53
MLLLRRKASLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARRPRV
Sbjct: 1 MLLLRRKASLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARRPRV 53
>gi|239750521 PREDICTED: hypothetical protein [Homo sapiens]
Length = 53
Score = 108 bits (271), Expect = 7e-25
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MLLLRRKASLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARRPRV 53
MLLLRRKASLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARRPRV
Sbjct: 1 MLLLRRKASLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARRPRV 53
>gi|239744816 PREDICTED: hypothetical protein XP_002343280 [Homo
sapiens]
Length = 53
Score = 108 bits (271), Expect = 7e-25
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MLLLRRKASLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARRPRV 53
MLLLRRKASLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARRPRV
Sbjct: 1 MLLLRRKASLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARRPRV 53
>gi|239754468 PREDICTED: hypothetical protein [Homo sapiens]
Length = 146
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 21 GAHTKRRR----SRRLRRPFRAAPPPLPRARARRPR 52
G H +RRR SRRL P R A P PR RPR
Sbjct: 31 GRHLRRRRGSCSSRRLSGPGRRAGAPTPRGPPPRPR 66
>gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo
sapiens]
Length = 159
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 21 GAHTKRRR----SRRLRRPFRAAPPPLPRARARRPR 52
G H +RRR SRRL P R A P PR RPR
Sbjct: 44 GRHLRRRRGSCSSRRLSGPGRRAGAPTPRGPPPRPR 79
>gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo
sapiens]
Length = 159
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 21 GAHTKRRR----SRRLRRPFRAAPPPLPRARARRPR 52
G H +RRR SRRL P R A P PR RPR
Sbjct: 44 GRHLRRRRGSCSSRRLSGPGRRAGAPTPRGPPPRPR 79
>gi|38016943 calcium release-activated calcium channel protein 1
[Homo sapiens]
Length = 301
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 5 RRKASLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRA 46
R LP P G TT G+ RRRS P APPP P A
Sbjct: 11 RSSPELP-PSGGSTTSGSRRSRRRSGDGEPP--GAPPPPPSA 49
>gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens]
Length = 312
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 11 PIPQAGDTT--QGAHTKRRRSRRLRRPFRAAPPPLP 44
P P G +GAH R R R + FRAAPPP P
Sbjct: 212 PYPTTGTAVAYRGAHL-RGRGRAVYNTFRAAPPPPP 246
>gi|169208488 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 11 PIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARRPR 52
P AGD G+H R++RL R AAP P PR AR R
Sbjct: 3 PKRSAGDA--GSHL---RAQRLGREVPAAPKPAPRQGARETR 39
>gi|239754838 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 5 RRKASLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARRP 51
R +A+L +P++ G +++RRS+ PFRA PR A RP
Sbjct: 59 RLRATLLLPRSRALRSGLSSRQRRSKEGLGPFRA-----PRIFAARP 100
>gi|239749375 PREDICTED: hypothetical protein XP_002347018 [Homo
sapiens]
Length = 265
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 5 RRKASLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARRP 51
R +A+L +P++ G +++RRS+ PFRA PR A RP
Sbjct: 59 RLRATLLLPRSRALRSGLSSRQRRSKEGLGPFRA-----PRIFAARP 100
>gi|239743512 PREDICTED: hypothetical protein XP_002342879 [Homo
sapiens]
Length = 265
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 5 RRKASLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARRP 51
R +A+L +P++ G +++RRS+ PFRA PR A RP
Sbjct: 59 RLRATLLLPRSRALRSGLSSRQRRSKEGLGPFRA-----PRIFAARP 100
>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
Length = 380
Score = 27.3 bits (59), Expect = 2.6
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 27 RRSR-RLRRPFRAAPPPLPRARARRPR 52
RRSR RL RP P P PR R+ PR
Sbjct: 187 RRSRPRLLRPASPPPRPAPRRRSTAPR 213
>gi|239740896 PREDICTED: hypothetical protein XP_002344079 [Homo
sapiens]
Length = 64
Score = 27.3 bits (59), Expect = 2.6
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 16 GDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARAR 49
G QG HT RRSR+ R P PLPR+ +
Sbjct: 19 GSWAQGEHT--RRSRQSLRDSPPTPNPLPRSHPK 50
>gi|239756902 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 4 LRRKASLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARR 50
+ RK Q G GA R SR RP APPP P RR
Sbjct: 49 INRKPRKLFSQPGGNGGGARAPRTFSRARARPA-PAPPPSPAPAPRR 94
>gi|169167740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
Query: 5 RRKASLPIP-----------QAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARAR 49
R+ A+LP+P ++G + + RP+ A PPP+P R R
Sbjct: 191 RKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPR 246
>gi|169167057 PREDICTED: hypothetical protein [Homo sapiens]
Length = 320
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 11 PIPQAGDTTQGAHTKRRRSRRLR-RPFRAAP------PPLPRARARRPR 52
P + + + H ++R+ +RL P RA P PLPRA PR
Sbjct: 149 PREKRASSAEPGHWEKRQDKRLETHPCRAPPLPPARRSPLPRAACAHPR 197
>gi|239751398 PREDICTED: hypothetical protein XP_002347837 [Homo
sapiens]
Length = 121
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 4 LRRKASLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARR 50
+ RK Q G GA R SR RP APPP P RR
Sbjct: 49 INRKPRKLFSQPGGNGGGARAPRTFSRARARPA-PAPPPSPAPAPRR 94
>gi|113416994 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
Query: 5 RRKASLPIP-----------QAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARAR 49
R+ A+LP+P ++G + + RP+ A PPP+P R R
Sbjct: 191 RKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPR 246
>gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo
sapiens]
Length = 193
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 20 QGAHTKRRRSRRLRRPFRAAPPP------LPRARARRP 51
Q AH R++ R+ +RP +P P +P R+R+P
Sbjct: 53 QAAHRPRQQQRQQQRPRPRSPDPAARGQHVPELRSRKP 90
>gi|239745907 PREDICTED: hypothetical protein XP_002343614 [Homo
sapiens]
Length = 121
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 4 LRRKASLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARR 50
+ RK Q G GA R SR RP APPP P RR
Sbjct: 49 INRKPRKLFSQPGGNGGGARAPRTFSRARARPA-PAPPPSPAPAPRR 94
>gi|113416470 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
Query: 5 RRKASLPIP-----------QAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARAR 49
R+ A+LP+P ++G + + RP+ A PPP+P R R
Sbjct: 191 RKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPR 246
>gi|239741505 PREDICTED: hypothetical protein XP_002342218 [Homo
sapiens]
Length = 343
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 20 QGAHTKRRRSRRLRRPFRAAPPP------LPRARARRP 51
Q AH R++ R+ +RP +P P +P R+R+P
Sbjct: 53 QAAHRPRQQQRQQQRPRPRSPDPAARGQHVPELRSRKP 90
>gi|41281683 disabled homolog 2 interacting protein isoform 2 [Homo
sapiens]
Length = 1065
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 3 LLRRKASLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARRP 51
L RR+ SL + G T RR+ +P PPP P R R P
Sbjct: 765 LARRQMSLT-EKGGQPTVPRQNSAGPQRRIDQPPPPPPPPPPAPRGRTP 812
>gi|94967023 disabled homolog 2 interacting protein isoform 1 [Homo
sapiens]
Length = 1132
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 3 LLRRKASLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARRP 51
L RR+ SL + G T RR+ +P PPP P R R P
Sbjct: 861 LARRQMSLT-EKGGQPTVPRQNSAGPQRRIDQPPPPPPPPPPAPRGRTP 908
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 16 GDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARRPR 52
G G +RRR RR RR R++ R RRPR
Sbjct: 376 GGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPR 412
>gi|182765466 FCH and double SH3 domains 2 [Homo sapiens]
Length = 740
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 9 SLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARRP 51
SL G + HT +LR P RAAPPP P RRP
Sbjct: 688 SLHAESPGFSQASRHTPETSYGKLR-PVRAAPPP-PTQNHRRP 728
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 25 KRRRSRRLRRPFRAAPPPLPRARARRP 51
+RR S R R P R PPP R+R P
Sbjct: 318 RRRPSPRRRTPPRRMPPPPRHRRSRSP 344
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/48 (35%), Positives = 20/48 (41%)
Query: 5 RRKASLPIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLPRARARRPR 52
RR S P + + A RRR P R P P PR R+ PR
Sbjct: 547 RRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPR 594
>gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
Length = 397
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 11 PIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLP 44
P A +GAH R R R + FRAA PP P
Sbjct: 259 PAATAAAAYRGAHL-RGRGRTVYNTFRAAAPPPP 291
>gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens]
Length = 370
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 11 PIPQAGDTTQGAHTKRRRSRRLRRPFRAAPPPLP 44
P A +GAH R R R + FRAA PP P
Sbjct: 232 PAATAAAAYRGAHL-RGRGRTVYNTFRAAAPPPP 264
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,550,807
Number of Sequences: 37866
Number of extensions: 106018
Number of successful extensions: 1089
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1047
Number of HSP's gapped (non-prelim): 75
length of query: 53
length of database: 18,247,518
effective HSP length: 27
effective length of query: 26
effective length of database: 17,225,136
effective search space: 447853536
effective search space used: 447853536
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.