Guide to the Human Genome
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Name: LOC100287772 Sequence: fasta or formatted (53aa) NCBI GI: 239744816
Description:

PREDICTED: hypothetical protein XP_002343280

Not currently referenced in the text

Other entries for this name:
alt mRNA {53aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2          7           2
 C cysteine            0.0          0           0
 D aspartate           1.9          1           1
 E glutamate           0.0          0           0
 F phenylalanine       1.9          1           1
 G glycine             3.8          2           1
 H histidine           1.9          1           1
 I isoleucine          1.9          1           1
 K lysine              3.8          2           1
 L leucine            11.3          6           3
 M methionine          1.9          1           1
 N asparagine          0.0          0           0
 P proline            15.1          8           3
 Q glutamine           3.8          2           1
 R arginine           28.3         15           3
 S serine              3.8          2           1
 T threonine           5.7          3           2
 V valine              1.9          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343280 
LOC100292998          1.000   PREDICTED: hypothetical protein 
LOC100287772          1.000   PREDICTED: hypothetical protein 
LOC100293385          0.072   PREDICTED: hypothetical protein 
LOC100290381          0.072   PREDICTED: hypothetical protein XP_002346884 
LOC100289601          0.072   PREDICTED: hypothetical protein XP_002342725 
ORAI1                 0.060   calcium release-activated calcium channel protein 1 ...
HRNBP3                0.048   hexaribonucleotide binding protein 3 
LOC100132799          0.036   PREDICTED: hypothetical protein 
LOC100293371          0.036   PREDICTED: hypothetical protein 
LOC100291490          0.036   PREDICTED: hypothetical protein XP_002347018 
LOC100287037          0.036   PREDICTED: hypothetical protein XP_002342879 
LOC100293818          0.024   PREDICTED: hypothetical protein 
LOC100294307          0.024   PREDICTED: hypothetical protein XP_002344079 
LOC100293654          0.024   PREDICTED: hypothetical protein 
LOC729506             0.024   PREDICTED: hypothetical protein 
LOC731282             0.024   PREDICTED: hypothetical protein 
LOC100290979          0.024   PREDICTED: hypothetical protein XP_002347837 
LOC729506             0.024   PREDICTED: hypothetical protein 
LOC100290263          0.024   PREDICTED: hypothetical protein XP_002347916 
LOC100288912          0.024   PREDICTED: hypothetical protein XP_002343614 
LOC729506             0.024   PREDICTED: hypothetical protein 
LOC100288925          0.024   PREDICTED: hypothetical protein XP_002342218 
DAB2IP                0.024   disabled homolog 2 interacting protein isoform 2 [Ho...
DAB2IP                0.024   disabled homolog 2 interacting protein isoform 1 [Ho...
FLJ37078              0.024   hypothetical protein LOC222183 
FCHSD2                0.024   FCH and double SH3 domains 2 
SRRM1                 0.024   serine/arginine repetitive matrix 1 
A2BP1                 0.012   ataxin 2-binding protein 1 isoform 4 
A2BP1                 0.012   ataxin 2-binding protein 1 isoform 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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