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Search of human proteins with 239744756
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744756 PREDICTED: hypothetical protein XP_002343266 [Homo
sapiens]
(140 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744756 PREDICTED: hypothetical protein XP_002343266 [Homo ... 298 1e-81
gi|239755947 PREDICTED: hypothetical protein [Homo sapiens] 270 4e-73
gi|239750454 PREDICTED: hypothetical protein XP_002347366 [Homo ... 268 1e-72
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 36 0.012
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H... 36 0.012
gi|56549696 E1A binding protein p400 [Homo sapiens] 34 0.045
gi|4501957 alpha-1D-adrenergic receptor [Homo sapiens] 34 0.045
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 34 0.045
gi|169194701 PREDICTED: hypothetical protein [Homo sapiens] 32 0.17
gi|89031838 PREDICTED: hypothetical protein [Homo sapiens] 32 0.17
gi|89030878 PREDICTED: hypothetical protein [Homo sapiens] 32 0.17
gi|71143119 signal-induced proliferation-associated 1 like 3 [Ho... 32 0.17
gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming ... 32 0.22
gi|38327037 hyperpolarization activated cyclic nucleotide-gated ... 31 0.29
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 31 0.38
gi|20143482 melanoma antigen family E, 1 [Homo sapiens] 31 0.38
gi|226442736 ring finger protein 222 [Homo sapiens] 30 0.49
gi|239745703 PREDICTED: ring finger protein 222 [Homo sapiens] 30 0.49
gi|149773484 leucine rich repeat and fibronectin type III domain... 30 0.49
gi|56788377 nucleoporin like 1 isoform b [Homo sapiens] 30 0.49
gi|30102928 nucleoporin like 1 isoform a [Homo sapiens] 30 0.49
gi|150170670 piccolo isoform 2 [Homo sapiens] 30 0.49
gi|150378539 piccolo isoform 1 [Homo sapiens] 30 0.49
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 30 0.65
gi|18643383 inositol 1,4,5-trisphosphate 3-kinase C [Homo sapiens] 30 0.65
gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo ... 29 1.1
gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo ... 29 1.1
gi|21040275 AlkB homolog 3 [Homo sapiens] 29 1.1
gi|157502169 astacin-like metalloendopeptidase [Homo sapiens] 29 1.1
gi|110578663 hypothetical protein LOC203074 [Homo sapiens] 29 1.1
>gi|239744756 PREDICTED: hypothetical protein XP_002343266 [Homo
sapiens]
Length = 140
Score = 298 bits (762), Expect = 1e-81
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MGVAADSSWKWKLTPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRH 60
MGVAADSSWKWKLTPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRH
Sbjct: 1 MGVAADSSWKWKLTPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRH 60
Query: 61 SSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHA 120
SSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHA
Sbjct: 61 SSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHA 120
Query: 121 GPVSQCADYKRRKKSSSSEY 140
GPVSQCADYKRRKKSSSSEY
Sbjct: 121 GPVSQCADYKRRKKSSSSEY 140
>gi|239755947 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 270 bits (689), Expect = 4e-73
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 14 TPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT 73
TPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT
Sbjct: 3 TPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT 62
Query: 74 QLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKRRK 133
QLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKRRK
Sbjct: 63 QLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKRRK 122
Query: 134 KSSSSEY 140
KSSSSEY
Sbjct: 123 KSSSSEY 129
>gi|239750454 PREDICTED: hypothetical protein XP_002347366 [Homo
sapiens]
Length = 144
Score = 268 bits (685), Expect = 1e-72
Identities = 126/127 (99%), Positives = 127/127 (100%)
Query: 14 TPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT 73
+PGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT
Sbjct: 18 SPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT 77
Query: 74 QLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKRRK 133
QLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKRRK
Sbjct: 78 QLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKRRK 137
Query: 134 KSSSSEY 140
KSSSSEY
Sbjct: 138 KSSSSEY 144
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 35.8 bits (81), Expect = 0.012
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 13 LTPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAET 72
+T G +A GP + P+P PS +P + + +RS R + SP +A A
Sbjct: 569 ITEGSEARAGP---PAPAPPAPIPPPAPSQSSPPEQPQSMEMRSVLRKAGSPRKARRARL 625
Query: 73 TQLEGLVES-------VPQKATDRMPDPRPISRHGLCAFH 105
L L+++ V Q+A M DP + G+ A H
Sbjct: 626 NPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALH 665
>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
sapiens]
Length = 828
Score = 35.8 bits (81), Expect = 0.012
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 13 LTPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAET 72
+T G +A GP + P+P PS +P + + +RS R + SP +A A
Sbjct: 569 ITEGSEARAGP---PAPAPPAPIPPPAPSQSSPPEQPQSMEMRSVLRKAGSPRKARRARL 625
Query: 73 TQLEGLVES-------VPQKATDRMPDPRPISRHGLCAFH 105
L L+++ V Q+A M DP + G+ A H
Sbjct: 626 NPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALH 665
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 33.9 bits (76), Expect = 0.045
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 30 PRKRPLPASDPSWGAPITEARGPG---LRSN--GRHSSSPHRAWSAETTQLEGLVESVPQ 84
P RPLP S S AP++ + GPG RS+ R SS+ ++A S T++ G+V S P
Sbjct: 656 PCPRPLPTSSTSSLAPVSGS-GPGPSPARSSPVNRPSSATNKALSPVTSRTPGVVASAPT 714
Query: 85 K 85
K
Sbjct: 715 K 715
>gi|4501957 alpha-1D-adrenergic receptor [Homo sapiens]
Length = 572
Score = 33.9 bits (76), Expect = 0.045
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 19 AAPG-PLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETTQLEG 77
A PG PL LT+LP P P P AP+ R P P R TTQL
Sbjct: 456 APPGAPLALTALPDPDPEPPGTPEMQAPVASRRKPPSAFREWRLLGPFR---RPTTQLRA 512
Query: 78 LVESVPQK 85
V S+ K
Sbjct: 513 KVSSLSHK 520
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 33.9 bits (76), Expect = 0.045
Identities = 40/135 (29%), Positives = 56/135 (41%), Gaps = 29/135 (21%)
Query: 15 PGVKAAPGPLCLTSLPRKRPLPASDP--SWGAPITEARGPGLRSNGRHSSSPHRAWSAET 72
P +A+P P P KR + S P +P+T+ R P L S R SSP R+
Sbjct: 621 PKRRASPSP------PPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREAR 674
Query: 73 TQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFR----SPEGRE---PHAGP--- 122
+ PQ P PRP R + P R SP+ R+ P P
Sbjct: 675 S---------PQPNKRHSPSPRP--RAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRR 723
Query: 123 VSQCADYKRRKKSSS 137
VS+ + K+ KK++S
Sbjct: 724 VSRTPEPKKIKKAAS 738
>gi|169194701 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 32.0 bits (71), Expect = 0.17
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 45 PITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISR------ 98
P AR P +G H+ S A T Q S P+ A+ R+ PRP++R
Sbjct: 22 PTPRARPPDC--SGGHAPSGFPALGLRTAQRPRPFSSSPRSASGRLRGPRPVARGPAHSS 79
Query: 99 --HGLCAFHPSTTFRSPEGREPHAGPVSQ 125
GL A+ P + P PV++
Sbjct: 80 SPTGLPAYLPPAAALDSQTSAPTVSPVTR 108
>gi|89031838 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 32.0 bits (71), Expect = 0.17
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 45 PITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISR------ 98
P AR P +G H+ S A T Q S P+ A+ R+ PRP++R
Sbjct: 22 PTPRARPPDC--SGGHAPSGFPALGLRTAQRPRPFSSSPRSASGRLRGPRPVARGPAHSS 79
Query: 99 --HGLCAFHPSTTFRSPEGREPHAGPVSQ 125
GL A+ P + P PV++
Sbjct: 80 SPTGLPAYLPPAAALDSQTSAPTVSPVTR 108
>gi|89030878 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 32.0 bits (71), Expect = 0.17
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 45 PITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISR------ 98
P AR P +G H+ S A T Q S P+ A+ R+ PRP++R
Sbjct: 22 PTPRARPPDC--SGGHAPSGFPALGLRTAQRPRPFSSSPRSASGRLRGPRPVARGPAHSS 79
Query: 99 --HGLCAFHPSTTFRSPEGREPHAGPVSQ 125
GL A+ P + P PV++
Sbjct: 80 SPTGLPAYLPPAAALDSQTSAPTVSPVTR 108
>gi|71143119 signal-induced proliferation-associated 1 like 3 [Homo
sapiens]
Length = 1781
Score = 32.0 bits (71), Expect = 0.17
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 12/104 (11%)
Query: 27 TSLPRKRPLPASDPSWGAPITEAR---GPGLRSNGRHSSSPHRAWSA----ETTQLEGLV 79
T P RPLP SDP P LR++ R SP + + + + +L +
Sbjct: 1462 TEEPPPRPLPFSDPKKQVDTNTKNVFGQPRLRASLRDLRSPRKNYKSTIEDDLKKLIIMD 1521
Query: 80 ESVPQKATDRMPDP-----RPISRHGLCAFHPSTTFRSPEGREP 118
P++ D P R +S LC+ +F SP G EP
Sbjct: 1522 NLGPEQERDTGQSPQKGLQRTLSDESLCSGRREPSFASPAGLEP 1565
>gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming
sequence b [Homo sapiens]
Length = 982
Score = 31.6 bits (70), Expect = 0.22
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 37 ASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPI 96
ASDP P+ AR P R N +H SS +R S + L E +P P P
Sbjct: 772 ASDP---VPLPPARPP-TRDNPKHGSSLNRTPSDYDLLIPPLGEDAFDALPPSLPPPPPP 827
Query: 97 SRHGLCAFH--PSTTFRSPEGRE 117
+RH L P ++ R G++
Sbjct: 828 ARHSLIEHSKPPGSSSRPSSGQD 850
>gi|38327037 hyperpolarization activated cyclic nucleotide-gated
potassium channel 3 [Homo sapiens]
Length = 774
Score = 31.2 bits (69), Expect = 0.29
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 30 PRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKA-TD 88
PR RPL AS PS T PG + +G P GL+ P+ A
Sbjct: 707 PRGRPLSASQPSLPQRATGDGSPGRKGSGSERLPP-----------SGLLAKPPRTAQPP 755
Query: 89 RMPDPRPISRHGL 101
R P P P + GL
Sbjct: 756 RPPVPEPATPRGL 768
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 30.8 bits (68), Expect = 0.38
Identities = 35/131 (26%), Positives = 43/131 (32%), Gaps = 24/131 (18%)
Query: 19 AAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLR--------------SNGRHSSSP 64
A GP T PR P P+ +PS P R P L S R S SP
Sbjct: 2037 ALAGP---TVPPRPEPGPSMEPSLTPPAVPPRAPILSKGPSPPLNGNILSCSPDRRSPSP 2093
Query: 65 HRA----W--SAETTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREP 118
+ W S ++LE P+K P PI G P T +
Sbjct: 2094 KESGRSHWDDSTSDSELEKGAREQPEKEAQSPSPPHPIPM-GSPTLWPETEAHVSPPLDS 2152
Query: 119 HAGPVSQCADY 129
H GP D+
Sbjct: 2153 HLGPARPSLDF 2163
Score = 27.3 bits (59), Expect = 4.2
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 14/82 (17%)
Query: 12 KLTPGVKAAPG-PLCLTSLP----RKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHR 66
KL P +K P P L +P + RPLP AP++ A GP + H+ +P
Sbjct: 1824 KLMPHMKNEPTTPSWLADIPPWVPKDRPLPP------APLSPAPGPPTPAPESHTPAP-- 1875
Query: 67 AWSAETTQLEGLVESVPQKATD 88
+S T + + +V +V + A +
Sbjct: 1876 -FSWGTAEYDSVVAAVQEGAAE 1896
>gi|20143482 melanoma antigen family E, 1 [Homo sapiens]
Length = 957
Score = 30.8 bits (68), Expect = 0.38
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 34 PLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDP 93
P P PS T GPG ++ +++ + S + T EG SVP AT+ + P
Sbjct: 190 PTPDEGPSTSVLPTPGEGPG--TSVPLAATEGLSTSVQATPDEGPSTSVPPTATEGLSTP 247
Query: 94 RPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCAD 128
P +R PST+ + G P + +D
Sbjct: 248 VPPTRDE----GPSTSVPATPGEGPSTSVLPAASD 278
>gi|226442736 ring finger protein 222 [Homo sapiens]
Length = 220
Score = 30.4 bits (67), Expect = 0.49
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 26 LTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSP 64
L SL PL AS P+W P +AR PG S G+ + P
Sbjct: 100 LDSLGHTNPLAASSPAWRPPPGQARPPG--SPGQSAQLP 136
>gi|239745703 PREDICTED: ring finger protein 222 [Homo sapiens]
Length = 220
Score = 30.4 bits (67), Expect = 0.49
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 26 LTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSP 64
L SL PL AS P+W P +AR PG S G+ + P
Sbjct: 100 LDSLGHTNPLAASSPAWRPPPGQARPPG--SPGQSAQLP 136
>gi|149773484 leucine rich repeat and fibronectin type III domain
containing 1 [Homo sapiens]
Length = 771
Score = 30.4 bits (67), Expect = 0.49
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 17/85 (20%)
Query: 16 GVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGR----HSSSPHRAWSAE 71
G AP +C+ LP P PA+ P P+TE + + GR S++ R +AE
Sbjct: 377 GEATAPVEVCVVPLPLMAPPPAAPP----PLTEPGSSDIATPGRPGANDSAAERRLVAAE 432
Query: 72 TTQLEGLVESVPQKATDRMPDPRPI 96
T L+ R P RP+
Sbjct: 433 LTSNSVLI---------RWPAQRPV 448
>gi|56788377 nucleoporin like 1 isoform b [Homo sapiens]
Length = 587
Score = 30.4 bits (67), Expect = 0.49
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 15/69 (21%)
Query: 10 KWKLTPGVKAAPGP---------------LCLTSLPRKRPLPASDPSWGAPITEARGPGL 54
KW+ TP V P P L P P P+ S+G P G GL
Sbjct: 429 KWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGPQPSLGVSFGTPFGSGIGTGL 488
Query: 55 RSNGRHSSS 63
+S+G SS+
Sbjct: 489 QSSGLGSSN 497
>gi|30102928 nucleoporin like 1 isoform a [Homo sapiens]
Length = 599
Score = 30.4 bits (67), Expect = 0.49
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 15/69 (21%)
Query: 10 KWKLTPGVKAAPGP---------------LCLTSLPRKRPLPASDPSWGAPITEARGPGL 54
KW+ TP V P P L P P P+ S+G P G GL
Sbjct: 441 KWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGPQPSLGVSFGTPFGSGIGTGL 500
Query: 55 RSNGRHSSS 63
+S+G SS+
Sbjct: 501 QSSGLGSSN 509
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 30.4 bits (67), Expect = 0.49
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 61 SSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPE---GRE 117
S P A S + + L S P K + R PDP ++ GL + TFRS + GR
Sbjct: 70 SVPPAAAESPSMHRKQELDSSHPPKQSGRPPDPGRPAQPGLSKSRTTDTFRSEQKLPGRS 129
Query: 118 PHAGPVSQC---ADYKRRKKSS 136
P + + D K KSS
Sbjct: 130 PSTISLKESKSRTDLKEEHKSS 151
Score = 27.7 bits (60), Expect = 3.2
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 15 PGVKAAPGPLCLTSLPRKRPLPASDPSW--GAPITEARGPGLRS 56
PG KA P + P ++P PA P+ G P A+ PGL+S
Sbjct: 386 PGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQS 429
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 30.4 bits (67), Expect = 0.49
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 61 SSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPE---GRE 117
S P A S + + L S P K + R PDP ++ GL + TFRS + GR
Sbjct: 70 SVPPAAAESPSMHRKQELDSSHPPKQSGRPPDPGRPAQPGLSKSRTTDTFRSEQKLPGRS 129
Query: 118 PHAGPVSQC---ADYKRRKKSS 136
P + + D K KSS
Sbjct: 130 PSTISLKESKSRTDLKEEHKSS 151
Score = 27.7 bits (60), Expect = 3.2
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 15 PGVKAAPGPLCLTSLPRKRPLPASDPSW--GAPITEARGPGLRS 56
PG KA P + P ++P PA P+ G P A+ PGL+S
Sbjct: 386 PGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQS 429
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 30.0 bits (66), Expect = 0.65
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 29 LPRKRPLPASDPSWGAPITEARGPGLRSNGRHS---SSPHRAWSAETTQLEGLVESVPQK 85
LP +R + P P+ ++ P SN R S S R++ + TT+ ++S PQ+
Sbjct: 499 LPEER---SDTPEVHPPLPISQSPENESNDRRSRRYSVSERSFGSRTTKKLSTLQSAPQQ 555
Query: 86 ATDRMPDP 93
T P P
Sbjct: 556 QTSSSPPP 563
>gi|18643383 inositol 1,4,5-trisphosphate 3-kinase C [Homo sapiens]
Length = 683
Score = 30.0 bits (66), Expect = 0.65
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 6 DSSWKWKLTPGVKAAPGPLCLTSLPRKRPLPASDP 40
D SW T G + APG CL P PL +P
Sbjct: 274 DGSWTQPSTDGSQTAPGTDCLLGEPEDGPLEEPEP 308
>gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 29.3 bits (64), Expect = 1.1
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 13/95 (13%)
Query: 15 PGVKAAPG---PLCLTSLPR----KRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRA 67
PG AP P+ ++PR + PLP+ G P P LR G + P A
Sbjct: 76 PGRPLAPRARQPVPHRAVPRQGSLREPLPSRRGRRGPPGHAPPSPSLRRRGARALQPSAA 135
Query: 68 WSAETTQLEGL------VESVPQKATDRMPDPRPI 96
A GL +P++ +PDP P+
Sbjct: 136 ARARARVPRGLRLHRPAHRGLPRRGLPSVPDPFPL 170
>gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 29.3 bits (64), Expect = 1.1
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 13/95 (13%)
Query: 15 PGVKAAPG---PLCLTSLPR----KRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRA 67
PG AP P+ ++PR + PLP+ G P P LR G + P A
Sbjct: 76 PGRPLAPRARQPVPHRAVPRQGSLREPLPSRRGRRGPPGHAPPSPSLRRRGARALQPSAA 135
Query: 68 WSAETTQLEGL------VESVPQKATDRMPDPRPI 96
A GL +P++ +PDP P+
Sbjct: 136 ARARARVPRGLRLHRPAHRGLPRRGLPSVPDPFPL 170
>gi|21040275 AlkB homolog 3 [Homo sapiens]
Length = 286
Score = 29.3 bits (64), Expect = 1.1
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 29 LPRKRPLPASDPSWGAPITEAR--GPGLRSNGRHSSSPHRAWSAETTQLEG--LVESVPQ 84
+ KR +W AP+ P + P + W + L V PQ
Sbjct: 1 MEEKRRRARVQGAWAAPVKSQAIAQPATTAKSHLHQKPGQTWKNKEHHLSDREFVFKEPQ 60
Query: 85 KATDRMPDPRPISRHGLCAFHPSTT 109
+ R P+PR I R G+ S T
Sbjct: 61 QVVRRAPEPRVIDREGVYEISLSPT 85
>gi|157502169 astacin-like metalloendopeptidase [Homo sapiens]
Length = 431
Score = 29.3 bits (64), Expect = 1.1
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 51 GPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTF 110
GP R G H+ S R+ + + L+ L+E++ A R PDP S G P+
Sbjct: 285 GPRPRGRGSHAHSTGRSPAPASLSLQRLLEAL--SAESRSPDPSGSSAGGQPV--PAGPG 340
Query: 111 RSPEGREPHA 120
SP G E A
Sbjct: 341 ESPHGWESPA 350
>gi|110578663 hypothetical protein LOC203074 [Homo sapiens]
Length = 352
Score = 29.3 bits (64), Expect = 1.1
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 22 GPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVES 81
GPL T P ++ SWG E PG+ + S + W + TQLEG +
Sbjct: 252 GPLVCTPEPGEKWYQVGIISWGKSCGEKNTPGIYT----SLVNYNLWIEKVTQLEGRPFN 307
Query: 82 VPQKATD--RMPDPRPIS 97
++ T + P P+S
Sbjct: 308 AEKRRTSVKQKPMGSPVS 325
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,450,538
Number of Sequences: 37866
Number of extensions: 420895
Number of successful extensions: 1368
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 1299
Number of HSP's gapped (non-prelim): 173
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.