Guide to the Human Genome
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Search of human proteins with 239744680

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744680 PREDICTED: hypothetical protein XP_002343239 [Homo
sapiens]
         (183 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239750378 PREDICTED: hypothetical protein XP_002347409 [Homo ...   372   e-103
gi|239744680 PREDICTED: hypothetical protein XP_002343239 [Homo ...   372   e-103
gi|239755842 PREDICTED: hypothetical protein [Homo sapiens]           370   e-103
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]           35   0.028
gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo sap...    35   0.047
gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo sap...    35   0.047
gi|119226260 calcium homeostasis endoplasmic reticulum protein [...    34   0.061
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]            34   0.080
gi|28269687 zygote arrest 1 [Homo sapiens]                             33   0.10 
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]     33   0.14 
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]            32   0.30 
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]           32   0.30 
gi|119120907 par-3 partitioning defective 3 homolog B isoform a ...    32   0.30 
gi|119120897 par-3 partitioning defective 3 homolog B isoform b ...    32   0.30 
gi|169208967 PREDICTED: hypothetical protein [Homo sapiens]            32   0.40 
gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]            32   0.40 
gi|169208709 PREDICTED: hypothetical protein [Homo sapiens]            32   0.40 
gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]            32   0.40 
gi|169208196 PREDICTED: hypothetical protein [Homo sapiens]            32   0.40 
gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]            32   0.40 
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]          31   0.52 
gi|239757046 PREDICTED: similar to hCG1790759 [Homo sapiens]           31   0.52 
gi|115511020 Smg-6 homolog, nonsense mediated mRNA decay factor ...    31   0.52 
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]            31   0.68 
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ...    31   0.68 
gi|156415990 Y box binding protein 2 [Homo sapiens]                    31   0.68 
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        31   0.68 
gi|21450842 megakaryocyte-associated tyrosine kinase isoform b [...    30   0.89 
gi|120587019 zinc finger protein 318 [Homo sapiens]                    30   0.89 
gi|145199237 transcription elongation factor B polypeptide 3 bin...    30   0.89 

>gi|239750378 PREDICTED: hypothetical protein XP_002347409 [Homo
           sapiens]
          Length = 183

 Score =  372 bits (954), Expect = e-103
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MQMIRLSITILVIIFIYLLHILSLRSVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEAN 60
           MQMIRLSITILVIIFIYLLHILSLRSVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEAN
Sbjct: 1   MQMIRLSITILVIIFIYLLHILSLRSVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEAN 60

Query: 61  INPNIFHRPNKHKNHKNSNSFRKLLLAESSNSYGRGQRLTAKAERNPADGEGRSPAAGRF 120
           INPNIFHRPNKHKNHKNSNSFRKLLLAESSNSYGRGQRLTAKAERNPADGEGRSPAAGRF
Sbjct: 61  INPNIFHRPNKHKNHKNSNSFRKLLLAESSNSYGRGQRLTAKAERNPADGEGRSPAAGRF 120

Query: 121 SASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHA 180
           SASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHA
Sbjct: 121 SASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHA 180

Query: 181 RRG 183
           RRG
Sbjct: 181 RRG 183


>gi|239744680 PREDICTED: hypothetical protein XP_002343239 [Homo
           sapiens]
          Length = 183

 Score =  372 bits (954), Expect = e-103
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MQMIRLSITILVIIFIYLLHILSLRSVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEAN 60
           MQMIRLSITILVIIFIYLLHILSLRSVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEAN
Sbjct: 1   MQMIRLSITILVIIFIYLLHILSLRSVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEAN 60

Query: 61  INPNIFHRPNKHKNHKNSNSFRKLLLAESSNSYGRGQRLTAKAERNPADGEGRSPAAGRF 120
           INPNIFHRPNKHKNHKNSNSFRKLLLAESSNSYGRGQRLTAKAERNPADGEGRSPAAGRF
Sbjct: 61  INPNIFHRPNKHKNHKNSNSFRKLLLAESSNSYGRGQRLTAKAERNPADGEGRSPAAGRF 120

Query: 121 SASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHA 180
           SASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHA
Sbjct: 121 SASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHA 180

Query: 181 RRG 183
           RRG
Sbjct: 181 RRG 183


>gi|239755842 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 183

 Score =  370 bits (949), Expect = e-103
 Identities = 182/183 (99%), Positives = 183/183 (100%)

Query: 1   MQMIRLSITILVIIFIYLLHILSLRSVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEAN 60
           MQMIRLSITILVIIFIYLLHILSLRSVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEAN
Sbjct: 1   MQMIRLSITILVIIFIYLLHILSLRSVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEAN 60

Query: 61  INPNIFHRPNKHKNHKNSNSFRKLLLAESSNSYGRGQRLTAKAERNPADGEGRSPAAGRF 120
           INPNIFHRPNKHKNHKNSNSFRKLLLAESS+SYGRGQRLTAKAERNPADGEGRSPAAGRF
Sbjct: 61  INPNIFHRPNKHKNHKNSNSFRKLLLAESSSSYGRGQRLTAKAERNPADGEGRSPAAGRF 120

Query: 121 SASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHA 180
           SASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHA
Sbjct: 121 SASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHA 180

Query: 181 RRG 183
           RRG
Sbjct: 181 RRG 183


>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
          Length = 329

 Score = 35.4 bits (80), Expect = 0.028
 Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 98  RLTAKAERNPADGEGRSPAAGRFSASRRSP------RGKEKAEAANPRSRRWRVPPTSR- 150
           R  + A+R  A G   SP AGR   +  SP       GK +     PR     VPP  + 
Sbjct: 133 RRPSSADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKR 192

Query: 151 -RNLLTRGPGRPAAAKGQLGHPNLGKSGKHARRG 183
            R LL RG  +P   +     P  G+     + G
Sbjct: 193 LRLLLERGSAQPEDCEDGEDAPRPGRKKTGTQTG 226


>gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo
           sapiens]
          Length = 451

 Score = 34.7 bits (78), Expect = 0.047
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 9/80 (11%)

Query: 105 RNPADGEGRSPAAGRFSASRRSPRGKEK-AEAANPRSRRWRVPPTSRRNLLTRGPGRPAA 163
           R PA    R    G  + S +  RG+++ A+ + P  RR   P  SRR    RGP    A
Sbjct: 169 RRPAARVLRLRCRGSRARSLQQARGQQRVAQGSGPVQRREARPGASRR----RGP----A 220

Query: 164 AKGQLGHPNLGKSGKHARRG 183
            + QLGHP +   G   +RG
Sbjct: 221 LQQQLGHPRVSVPGGLVQRG 240


>gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo
           sapiens]
          Length = 487

 Score = 34.7 bits (78), Expect = 0.047
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 9/80 (11%)

Query: 105 RNPADGEGRSPAAGRFSASRRSPRGKEK-AEAANPRSRRWRVPPTSRRNLLTRGPGRPAA 163
           R PA    R    G  + S +  RG+++ A+ + P  RR   P  SRR    RGP    A
Sbjct: 169 RRPAARVLRLRCRGSRARSLQQARGQQRVAQGSGPVQRREARPGASRR----RGP----A 220

Query: 164 AKGQLGHPNLGKSGKHARRG 183
            + QLGHP +   G   +RG
Sbjct: 221 LQQQLGHPRVSVPGGLVQRG 240


>gi|119226260 calcium homeostasis endoplasmic reticulum protein
           [Homo sapiens]
          Length = 916

 Score = 34.3 bits (77), Expect = 0.061
 Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 66  FHRPNKHKNHKNSNSFRKLLLAESSNSYGRGQRLTAKAERNPADGEGRSPAAGRFSASRR 125
           F+ P  H   +NS  + +  L E   +  R +R   + +RN      RS +  R  +S R
Sbjct: 693 FYSPPSHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSR 752

Query: 126 SPRGKEKAEAANPRSR-RWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHARR 182
           S     K+  +  RSR R      SR    +R   R + ++ +    +  KS    RR
Sbjct: 753 SNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSSRSRSRSQSRSRSKSYSPGRR 810



 Score = 31.2 bits (69), Expect = 0.52
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 9/115 (7%)

Query: 70  NKHKNHKNSNSFRKLLLAESSNSYGRGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRG 129
           ++ K+   S+S      ++SS SY R +  +    R+ +    RS +  R S SR   + 
Sbjct: 741 SRSKSRGRSSSRSNSRSSKSSGSYSRSR--SRSCSRSYSRSRSRSRSRSRSSRSRSRSQS 798

Query: 130 KEKAEAANP-RSRRWR----VPPTSRRNLLTRGPGRPAAAKGQ--LGHPNLGKSG 177
           + ++++ +P R RR R     PP+S        P  P +  G+   GH  L K G
Sbjct: 799 RSRSKSYSPGRRRRSRSRSPTPPSSAGLGSNSAPPIPDSRLGEENKGHQMLVKMG 853


>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 819

 Score = 33.9 bits (76), Expect = 0.080
 Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 95  RGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLL 154
           R Q+  A   +N   G G   AA       +     +KA AA  +SR  + P   RR   
Sbjct: 141 RAQKSAAAGSKNR--GAGAQKAAAAAGVKSQGGEKPQKAAAAGAKSRSGKKP--RRRGAK 196

Query: 155 TRG----PGRPAAAKGQLGHPNLGKSGKHAR 181
           +RG     GR   AK + G    G+  KH R
Sbjct: 197 SRGDEDKKGRQREAKSRFGKTRGGRRKKHRR 227



 Score = 30.8 bits (68), Expect = 0.68
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 101 AKAERNPADGEGRSPAAGRFSAS---RRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRG 157
           A    N   GE ++ AAG  S     R+  R  +KA A   +  RWR   ++      RG
Sbjct: 95  AGGAENRGGGEQKAAAAGTKSLGGRGRKPRRRGQKAAATGSKKPRWRAQKSAAAGSKNRG 154

Query: 158 PGRPAAA 164
            G   AA
Sbjct: 155 AGAQKAA 161



 Score = 28.5 bits (62), Expect = 3.4
 Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 12/88 (13%)

Query: 95  RGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLL 154
           RGQ+   KA    A+  G               +G++KA AA  +SR   +   S +NL 
Sbjct: 453 RGQKARQKAAEAGAESRGDKK------------QGRQKASAAGTKSRGGGLKSHSGKNLW 500

Query: 155 TRGPGRPAAAKGQLGHPNLGKSGKHARR 182
            RG    AA +         +  K  RR
Sbjct: 501 RRGQKAEAAGEKATAAGAKSRGRKQPRR 528


>gi|28269687 zygote arrest 1 [Homo sapiens]
          Length = 424

 Score = 33.5 bits (75), Expect = 0.10
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 96  GQRLTAKAERNP-ADGEGRSPAAGRFSASRRS------PRGKEKAEAANPRSRRWRVPPT 148
           G+  T KA R P +D +G + AA R S  + +      PR  ++ EAA   + R    P 
Sbjct: 226 GEVWTKKAPRRPQSDDDGEAQAAVRASWEQPADGPELPPREAQEGEAAPRSALRSPGQPP 285

Query: 149 SRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHARR 182
           S       G GR AA  G+   P   + GK   R
Sbjct: 286 SAGRARDGGDGREAAVAGEGPSPRSPELGKERLR 319


>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
          Length = 494

 Score = 33.1 bits (74), Expect = 0.14
 Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 19/145 (13%)

Query: 44  RRESHLRCEQDTCSEANINPNIFHRPNKHKNHKNSNSFRKLLLAESSNSYGRG------- 96
           R ES  R    + SE +       R    K    + S +K    ++  S  R        
Sbjct: 361 REESRSRSRSRSKSERS-------RKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSK 413

Query: 97  QRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTR 156
           +R  AK+E +  +G G S  AG    +R   R   K++   P   R R    S+    ++
Sbjct: 414 EREHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSK 473

Query: 157 GPGRPAAAKGQLGHPNLGKSGKHAR 181
              R A+       P+  +S  H+R
Sbjct: 474 SRSRSASRS-----PSRSRSRSHSR 493


>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 261

 Score = 32.0 bits (71), Expect = 0.30
 Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 10/73 (13%)

Query: 98  RLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWR-------VPPTSR 150
           R  + A+R  A G   SP AGR   +  SP G  KA    PR R  R       V P  +
Sbjct: 101 RRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKA-TGKPRGRDGRPRREEDDVTPEEK 159

Query: 151 --RNLLTRGPGRP 161
             R LL  G  +P
Sbjct: 160 RLRLLLEEGSAQP 172


>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
          Length = 364

 Score = 32.0 bits (71), Expect = 0.30
 Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 10/73 (13%)

Query: 98  RLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWR-------VPPTSR 150
           R  + A+R  A G   SP AGR   +  SP G  KA    PR R  R       V P  +
Sbjct: 204 RRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKA-TGKPRGRDGRPRREEDDVTPEEK 262

Query: 151 --RNLLTRGPGRP 161
             R LL  G  +P
Sbjct: 263 RLRLLLEEGSAQP 275


>gi|119120907 par-3 partitioning defective 3 homolog B isoform a
           [Homo sapiens]
          Length = 1104

 Score = 32.0 bits (71), Expect = 0.30
 Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 41  LAFRRESHLRCEQDTCSEANINPNIFHRPNKH--KNHKNSNSFRKLL------------- 85
           L  ++ S L   Q   +E   N   FHRP  H  +    + SFR  +             
Sbjct: 739 LGLKKSSSLESLQTAVAEVRKNDLPFHRPRPHMVRGRGCNESFRAAIDKSYDGPEEIEAD 798

Query: 86  -LAESSNSYGRGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWR 144
            L++ S+  G+G      A +  ++ E     A +   ++   + KEK +      +R  
Sbjct: 799 GLSDKSSHSGQGALNCESAPQGNSELEDMENKARKVKKTKEKEKKKEKGKLKVKEKKRKE 858

Query: 145 VPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHARRG 183
                 R +  +G G    A  + G     K GK  ++G
Sbjct: 859 ENEDPERKIKKKGFG----AMLRFGKKKEDKGGKAEQKG 893


>gi|119120897 par-3 partitioning defective 3 homolog B isoform b
           [Homo sapiens]
          Length = 1143

 Score = 32.0 bits (71), Expect = 0.30
 Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 41  LAFRRESHLRCEQDTCSEANINPNIFHRPNKH--KNHKNSNSFRKLL------------- 85
           L  ++ S L   Q   +E   N   FHRP  H  +    + SFR  +             
Sbjct: 677 LGLKKSSSLESLQTAVAEVRKNDLPFHRPRPHMVRGRGCNESFRAAIDKSYDGPEEIEAD 736

Query: 86  -LAESSNSYGRGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWR 144
            L++ S+  G+G      A +  ++ E     A +   ++   + KEK +      +R  
Sbjct: 737 GLSDKSSHSGQGALNCESAPQGNSELEDMENKARKVKKTKEKEKKKEKGKLKVKEKKRKE 796

Query: 145 VPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHARRG 183
                 R +  +G G    A  + G     K GK  ++G
Sbjct: 797 ENEDPERKIKKKGFG----AMLRFGKKKEDKGGKAEQKG 831


>gi|169208967 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 200

 Score = 31.6 bits (70), Expect = 0.40
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 85  LLAESSNSYGRGQRLTAKAERNPADGEGRSPAAGRFSA---SRRSPRGKEKAEAANPR-S 140
           L A S  +   G R    A   PA   GRS  A   +A   + RSP G +    ++ R S
Sbjct: 124 LTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGS 183

Query: 141 RRWR 144
           RRWR
Sbjct: 184 RRWR 187


>gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 625

 Score = 31.6 bits (70), Expect = 0.40
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 10/82 (12%)

Query: 84  LLLAESSNSYGRG--QRLTAKAERNPADGE-------GRSPAAGRFSASRRSPRGKEKAE 134
           LLL + + ++G+   QR+ AK  R   + E       GR   A +    RR  RG+E+ E
Sbjct: 369 LLLEQRAAAHGQWELQRVHAKQRREREEREKQRALEQGRRAWAAQVE-ERRGRRGREERE 427

Query: 135 AANPRSRRWRVPPTSRRNLLTR 156
           AA  R R++      RR L  R
Sbjct: 428 AARRRQRQYERSEERRRELAER 449


>gi|169208709 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 150

 Score = 31.6 bits (70), Expect = 0.40
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 85  LLAESSNSYGRGQRLTAKAERNPADGEGRSPAAGRFSA---SRRSPRGKEKAEAANPR-S 140
           L A S  +   G R    A   PA   GRS  A   +A   + RSP G +    ++ R S
Sbjct: 74  LTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGS 133

Query: 141 RRWR 144
           RRWR
Sbjct: 134 RRWR 137


>gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 627

 Score = 31.6 bits (70), Expect = 0.40
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 10/82 (12%)

Query: 84  LLLAESSNSYGRG--QRLTAKAERNPADGE-------GRSPAAGRFSASRRSPRGKEKAE 134
           LLL + + ++G+   QR+ AK  R   + E       GR   A +    RR  RG+E+ E
Sbjct: 371 LLLEQRAAAHGQWELQRVHAKQRREREEREKQRALEQGRRAWAAQVE-ERRGRRGREERE 429

Query: 135 AANPRSRRWRVPPTSRRNLLTR 156
           AA  R R++      RR L  R
Sbjct: 430 AARRRQRQYERSEERRRELAER 451


>gi|169208196 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 150

 Score = 31.6 bits (70), Expect = 0.40
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 85  LLAESSNSYGRGQRLTAKAERNPADGEGRSPAAGRFSA---SRRSPRGKEKAEAANPR-S 140
           L A S  +   G R    A   PA   GRS  A   +A   + RSP G +    ++ R S
Sbjct: 74  LTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGS 133

Query: 141 RRWR 144
           RRWR
Sbjct: 134 RRWR 137


>gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 627

 Score = 31.6 bits (70), Expect = 0.40
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 10/82 (12%)

Query: 84  LLLAESSNSYGRG--QRLTAKAERNPADGE-------GRSPAAGRFSASRRSPRGKEKAE 134
           LLL + + ++G+   QR+ AK  R   + E       GR   A +    RR  RG+E+ E
Sbjct: 371 LLLEQRAAAHGQWELQRVHAKQRREREEREKQRALEQGRRAWAAQVE-ERRGRRGREERE 429

Query: 135 AANPRSRRWRVPPTSRRNLLTR 156
           AA  R R++      RR L  R
Sbjct: 430 AARRRQRQYERSEERRRELAER 451


>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
          Length = 715

 Score = 31.2 bits (69), Expect = 0.52
 Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 23/174 (13%)

Query: 26  SVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEANINPNIFHRPNKHKNHKNSNSFRKLL 85
           S   ++ + S G+  +  R +S+   E  +  ++    +   RP   ++H  S S R+  
Sbjct: 235 SPSSSRKVKSYGQMIIPSREKSYSPTEMSSRVKSYNQASTRSRP---QSHSQSRSPRRSR 291

Query: 86  LAESSNSYGRGQRLTAKAERNPADGEGRS---PAAGRFSASRRSPRGKEKAEAANP---R 139
                 ++ R +  + K   + A    R       GR S SR   +GK + ++  P   R
Sbjct: 292 SGSQKRTHSRVRSHSWKRNHSRARSRTRKGILSQMGRHSQSRSHSKGKSQNQSRTPRRGR 351

Query: 140 SRRWRVPPTSRRNLL----------TRGPGRPAAAKG--QLGHPNLGKSGKHAR 181
           S  W   P+  R+             RG   P    G  Q G PN  K   H+R
Sbjct: 352 SHNWSRNPSKERSHSHSRSSSKERDHRGSSSPRKESGRSQSGSPN--KQRDHSR 403



 Score = 30.0 bits (66), Expect = 1.2
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 69  PNKHKNHKNS-------NSFRKLLLAESSNSYGRGQRLTAKAERNPADGEGRSPAAGRFS 121
           P+K K+   S        S+ ++++     SY   +  +     N A    R  +  +  
Sbjct: 226 PSKEKSDNPSPSSSRKVKSYGQMIIPSREKSYSPTEMSSRVKSYNQASTRSRPQSHSQSR 285

Query: 122 ASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHAR 181
           + RRS  G +K   +  RS  W+   +  R+   +G         Q    + GKS   +R
Sbjct: 286 SPRRSRSGSQKRTHSRVRSHSWKRNHSRARSRTRKGILSQMGRHSQSRSHSKGKSQNQSR 345



 Score = 30.0 bits (66), Expect = 1.2
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 69  PNKHKNHKNSNSFRKLLLAESSNSYGR--GQRLTAKAERNPADGEGRSPAA-GRFSASRR 125
           P+K +  + S S  +      S S  +  G      + +  A    R+P+  G  S SR 
Sbjct: 575 PSKERERRQSRSSSEERDHSRSRSPNKQSGYSRPRASSKEKAHSRSRTPSKEGNHSQSRT 634

Query: 126 SPRGKEKAEAANPRSRRWRVPPTSRRNL 153
           S +  + +++  PRS  W+  PT   +L
Sbjct: 635 SSKESDPSQSTVPRSPDWKRSPTRTSSL 662


>gi|239757046 PREDICTED: similar to hCG1790759 [Homo sapiens]
          Length = 737

 Score = 31.2 bits (69), Expect = 0.52
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 80  SFRKLLLAESSNSYGRGQRLTAKAERNPADGEGRSPAAGRFSA--SRRSPRGKEKAEAAN 137
           S R++L    S+S+   Q  TA+  +  A  E R P   RFS   +  + R    A  A 
Sbjct: 111 SHREVLDPSLSSSFSNFQEKTARRFKGTAPAEARGPGGRRFSGLLTPSAARPDPPAPPAQ 170

Query: 138 PRSRRWRVPPT 148
              RR  V PT
Sbjct: 171 AWDRRGSVTPT 181


>gi|115511020 Smg-6 homolog, nonsense mediated mRNA decay factor
           [Homo sapiens]
          Length = 1419

 Score = 31.2 bits (69), Expect = 0.52
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 15/120 (12%)

Query: 30  NKDMSSCGKEYLAFRRESHLRCEQDTCSEANINPNIFHRPNKHKNHKNSNSFRKLLLAES 89
           +K+ +S  +E     +   LR E+D C        + ++P++               AE 
Sbjct: 156 SKESASRVEEEEVLNQVEQLRVEEDECRGNVAKEEVANKPDR---------------AEI 200

Query: 90  SNSYGRGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVPPTS 149
             S G G+   AK E+    G+G          +R  P   ++   ++ R  R+R   TS
Sbjct: 201 EKSPGGGRVGAAKGEKGKRMGKGEGVRETHDDPARGRPGSAKRYSRSDKRRNRYRTRSTS 260


>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 382

 Score = 30.8 bits (68), Expect = 0.68
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 14/92 (15%)

Query: 96  GQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLL- 154
           GQR   KAE   A   G      R    +RS  G     +   R+  W+  P+ R + + 
Sbjct: 234 GQRRVLKAEGARARARGGVCFGPRPGMQKRSGGG-----SGGQRAGGWQPGPSVRESCID 288

Query: 155 -------TRGPG-RPAAAKGQLGHPNLGKSGK 178
                  +RG G RP   +G +G  NLG  GK
Sbjct: 289 MAGRERPSRGAGQRPQRVRGSVGPWNLGSLGK 320


>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
           sapiens]
          Length = 382

 Score = 30.8 bits (68), Expect = 0.68
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 14/92 (15%)

Query: 96  GQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLL- 154
           GQR   KAE   A   G      R    +RS  G     +   R+  W+  P+ R + + 
Sbjct: 234 GQRRVLKAEGARARARGGVCFGPRPGMQKRSGGG-----SGGQRAGGWQPGPSVRESCID 288

Query: 155 -------TRGPG-RPAAAKGQLGHPNLGKSGK 178
                  +RG G RP   +G +G  NLG  GK
Sbjct: 289 MAGRERPSRGAGQRPQRVRGSVGPWNLGSLGK 320


>gi|156415990 Y box binding protein 2 [Homo sapiens]
          Length = 364

 Score = 30.8 bits (68), Expect = 0.68
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 115 PAAGRFSASRRSPRGK-EKAEAANPRSRRWRVPPTSRRNLLTRGPGRP 161
           P      ++   P  K E+AE +  R RRW  PP   R    RGP  P
Sbjct: 194 PMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRFVRGPRPP 241


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 30.8 bits (68), Expect = 0.68
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 87  AESSNSYGRGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVP 146
           + S N+  RG+  +A+  R+      RSPA    S SR +P  + ++ +  P  RR R  
Sbjct: 543 SRSRNTQRRGRSRSARRGRS----HSRSPATRGRSRSR-TPARRGRSRSRTPARRRSRSR 597

Query: 147 PTSRRNLLTRGPGRPAAAKGQ 167
             +RR   +R P R   ++ +
Sbjct: 598 TPTRRRSRSRTPARRGRSRSR 618



 Score = 30.8 bits (68), Expect = 0.68
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 105 RNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAA 164
           R PA    RS    R  +  R+P  + ++ +  P  RR R     RR   +R P R +  
Sbjct: 587 RTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGR 646

Query: 165 KGQLGHPNLGKSGKH--ARRG 183
                    G+S     ARRG
Sbjct: 647 SRSRTPARRGRSRSRTPARRG 667



 Score = 30.0 bits (66), Expect = 1.2
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 87   AESSNSYGRGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVP 146
            A    S  R   ++ +  R+      R  +  R S +RR  R + +A   + R  R R P
Sbjct: 1871 ATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRR--RSRSRASPVSRRRSRSRTP 1928

Query: 147  PTSRRNLLTRGP 158
            P +RR   +R P
Sbjct: 1929 PVTRRRSRSRTP 1940



 Score = 30.0 bits (66), Expect = 1.2
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 114  SPAAGRFSASRRSPRGKEKAEAANPRSR---RWRVPPTSRRNLLTRGP 158
            SP + R S SR  P  + ++ +  P +R   R R PP +RR   +R P
Sbjct: 1916 SPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTP 1963



 Score = 28.9 bits (63), Expect = 2.6
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 6/118 (5%)

Query: 69  PNKHKNHKNSNSFRKLLLAESSNSYGRGQRLTAKAERNPAD---GEGRSPAAGRFSASRR 125
           P   K      S R++  + +S +   G+    K+  +      G  RSPA  +   SR 
Sbjct: 438 PESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRS 497

Query: 126 SPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHARRG 183
             R   K   +  RS +WR   +++R   +R P R   ++     P   +S    RRG
Sbjct: 498 --RTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSP-QRPGWSRSRNTQRRG 552



 Score = 28.5 bits (62), Expect = 3.4
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 3/119 (2%)

Query: 44   RRESHLRCEQDTCSEANINPNIFHRPNKHKNHKNSNSFRKLLLAESSNSYGRGQRLTAKA 103
            RR S       T S    +P+   +P   +  ++ +   K       +  G  Q  + + 
Sbjct: 1744 RRRSASSPRTKTTSRRGRSPS--PKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRR 1801

Query: 104  ERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSR-RWRVPPTSRRNLLTRGPGRP 161
            +R+ +         G      RSP  +E +  ++ R R R R PPTSR+   +R    P
Sbjct: 1802 QRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAP 1860



 Score = 28.5 bits (62), Expect = 3.4
 Identities = 15/51 (29%), Positives = 19/51 (37%)

Query: 96   GQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVP 146
            G R  A        G G  P A  + +S R+P+    A    PRS     P
Sbjct: 2299 GARTPAALAALSLTGSGTPPTAANYPSSSRTPQAPASANLVGPRSAHATAP 2349



 Score = 27.7 bits (60), Expect = 5.7
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 8/85 (9%)

Query: 98   RLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRG 157
            R   +  R+ +  +GR P+    S++  SP    K+  A   SR    P T  R      
Sbjct: 1630 RALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRT----- 1684

Query: 158  PGRPAAAKGQLGHPNLGKSGKHARR 182
               P   +     P L +  + +RR
Sbjct: 1685 ---PPRRRSSRSSPELTRKARLSRR 1706



 Score = 26.9 bits (58), Expect = 9.8
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 110  GEGRSPAAGRF-SASRRSP----RGKEKAEAANPRSRRWRVPPTSRRNLLTR 156
            G  R+P   R  S SR SP    R + +A  A  R  R R P  SRR   +R
Sbjct: 1840 GRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSR 1891



 Score = 26.9 bits (58), Expect = 9.8
 Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 10/98 (10%)

Query: 57   SEANINPNIFHRPNKHKN----HKNSNSFRKLL--LAES-SNSYGRGQRLTAKAERNPAD 109
            S A   P    +P   K      + S S RK +  L +S S SY   +R     + +P D
Sbjct: 2650 SPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRD 2709

Query: 110  GEGRSPAAGRFSASR---RSPRGKEKAEAANPRSRRWR 144
             +  S   G     R   RSP  K + E  +PR  R R
Sbjct: 2710 QQSSSSERGSRRGQRGDSRSPSHKRRRETPSPRPMRHR 2747


>gi|21450842 megakaryocyte-associated tyrosine kinase isoform b
           [Homo sapiens]
          Length = 508

 Score = 30.4 bits (67), Expect = 0.89
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 111 EGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTR-GPGRPAAAKGQLG 169
           +G  PA  R    RR  RG+++   +    R W  PP S R    R  PG     K +  
Sbjct: 2   QGHFPAERREGRPRRGTRGQQQLLVSPRFLRAWHPPPVSARMPTRRWAPGTQCITKCEHT 61

Query: 170 HPNLGK 175
            P  G+
Sbjct: 62  RPKPGE 67


>gi|120587019 zinc finger protein 318 [Homo sapiens]
          Length = 2279

 Score = 30.4 bits (67), Expect = 0.89
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 9/75 (12%)

Query: 94  GRGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVPPTSRRNL 153
           G   R  A+  R+P+   GR        AS   PRG+ +   + PR+RR    P   R L
Sbjct: 47  GSSSRTPARRPRSPSGHRGRR-------ASPSPPRGR-RVSPSPPRARRGSPSPPRGRRL 98

Query: 154 LTRGP-GRPAAAKGQ 167
              GP G   +++G+
Sbjct: 99  FPPGPAGFRGSSRGE 113


>gi|145199237 transcription elongation factor B polypeptide 3
           binding protein 1 [Homo sapiens]
          Length = 1221

 Score = 30.4 bits (67), Expect = 0.89
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 9/82 (10%)

Query: 88  ESSNSYGRGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRG-KEKAEAANP--RSRRWR 144
           + +   GRG+ +    E+  AD +G   ++ R  A R  P G K+K  +A P   S + R
Sbjct: 397 DKTKDKGRGRPV----EKPRADKKGPQASSPRRKAER--PEGTKKKPSSATPVATSGKGR 450

Query: 145 VPPTSRRNLLTRGPGRPAAAKG 166
               +RR   T G  RPAA +G
Sbjct: 451 PDRPARRPSPTSGDSRPAAGRG 472


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,531,512
Number of Sequences: 37866
Number of extensions: 369289
Number of successful extensions: 2051
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 1914
Number of HSP's gapped (non-prelim): 245
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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