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Search of human proteins with 239744667
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744667 PREDICTED: hypothetical protein XP_002343220 [Homo
sapiens]
(250 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755855 PREDICTED: hypothetical protein [Homo sapiens] 505 e-143
gi|239750363 PREDICTED: hypothetical protein XP_002347382 [Homo ... 505 e-143
gi|239744667 PREDICTED: hypothetical protein XP_002343220 [Homo ... 505 e-143
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ... 37 0.012
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ... 37 0.012
gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens] 37 0.016
gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens] 37 0.016
gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens] 37 0.016
gi|11321642 bromodomain containing protein 1 [Homo sapiens] 37 0.021
gi|113421234 PREDICTED: similar to NG5 protein [Homo sapiens] 36 0.028
gi|113420954 PREDICTED: similar to NG5 protein [Homo sapiens] 36 0.028
gi|47777330 hypothetical protein LOC115939 [Homo sapiens] 35 0.047
gi|21396500 HIRA interacting protein 3 [Homo sapiens] 35 0.080
gi|51317366 myosin XVIIIB [Homo sapiens] 35 0.080
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 35 0.080
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 34 0.10
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 34 0.10
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 34 0.10
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 33 0.18
gi|122937398 dynein, cytoplasmic 2, heavy chain 1 [Homo sapiens] 33 0.18
gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo sa... 33 0.18
gi|4757962 cyclin-dependent kinase inhibitor 1B [Homo sapiens] 33 0.23
gi|150170699 kinesin family member 26A [Homo sapiens] 33 0.23
gi|8923009 non-SMC element 4 homolog A [Homo sapiens] 33 0.23
gi|195976782 Paf1/RNA polymerase II complex component [Homo sapi... 33 0.30
gi|209862785 anoctamin 2 [Homo sapiens] 32 0.40
gi|109637763 calpastatin isoform h [Homo sapiens] 32 0.40
gi|109637757 calpastatin isoform e [Homo sapiens] 32 0.40
gi|40354197 THAP domain containing 11 [Homo sapiens] 32 0.40
gi|41393610 Ras association (RalGDS/AF-6) domain family 6 isofor... 32 0.40
>gi|239755855 PREDICTED: hypothetical protein [Homo sapiens]
Length = 250
Score = 505 bits (1300), Expect = e-143
Identities = 250/250 (100%), Positives = 250/250 (100%)
Query: 1 MDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD 60
MDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD
Sbjct: 1 MDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD 60
Query: 61 GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE 120
GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE
Sbjct: 61 GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE 120
Query: 121 ASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSA 180
ASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSA
Sbjct: 121 ASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSA 180
Query: 181 KLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAVARLECWNAVAQSW 240
KLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAVARLECWNAVAQSW
Sbjct: 181 KLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAVARLECWNAVAQSW 240
Query: 241 LTQPLPPWFK 250
LTQPLPPWFK
Sbjct: 241 LTQPLPPWFK 250
>gi|239750363 PREDICTED: hypothetical protein XP_002347382 [Homo
sapiens]
Length = 250
Score = 505 bits (1300), Expect = e-143
Identities = 250/250 (100%), Positives = 250/250 (100%)
Query: 1 MDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD 60
MDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD
Sbjct: 1 MDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD 60
Query: 61 GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE 120
GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE
Sbjct: 61 GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE 120
Query: 121 ASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSA 180
ASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSA
Sbjct: 121 ASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSA 180
Query: 181 KLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAVARLECWNAVAQSW 240
KLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAVARLECWNAVAQSW
Sbjct: 181 KLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAVARLECWNAVAQSW 240
Query: 241 LTQPLPPWFK 250
LTQPLPPWFK
Sbjct: 241 LTQPLPPWFK 250
>gi|239744667 PREDICTED: hypothetical protein XP_002343220 [Homo
sapiens]
Length = 250
Score = 505 bits (1300), Expect = e-143
Identities = 250/250 (100%), Positives = 250/250 (100%)
Query: 1 MDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD 60
MDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD
Sbjct: 1 MDVLPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD 60
Query: 61 GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE 120
GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE
Sbjct: 61 GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE 120
Query: 121 ASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSA 180
ASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSA
Sbjct: 121 ASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSA 180
Query: 181 KLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAVARLECWNAVAQSW 240
KLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAVARLECWNAVAQSW
Sbjct: 181 KLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAVARLECWNAVAQSW 240
Query: 241 LTQPLPPWFK 250
LTQPLPPWFK
Sbjct: 241 LTQPLPPWFK 250
>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
sapiens]
Length = 177
Score = 37.4 bits (85), Expect = 0.012
Identities = 38/130 (29%), Positives = 48/130 (36%), Gaps = 5/130 (3%)
Query: 4 LPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPR---LRGAAERPRRSRDTWD 60
LP+GG R LR R G + LE +P A +PR R A RP W
Sbjct: 40 LPSGGLR--LRARPGRRALGLPSPLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWR 97
Query: 61 GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE 120
G + PG G +R L + + + E E R +G R R E
Sbjct: 98 GRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRRERELGTDARVGDGERELRPDARGRAE 157
Query: 121 ASGSDVVLGG 130
A SD V G
Sbjct: 158 AVCSDHVGAG 167
>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
sapiens]
Length = 177
Score = 37.4 bits (85), Expect = 0.012
Identities = 38/130 (29%), Positives = 48/130 (36%), Gaps = 5/130 (3%)
Query: 4 LPTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPR---LRGAAERPRRSRDTWD 60
LP+GG R LR R G + LE +P A +PR R A RP W
Sbjct: 40 LPSGGLR--LRARPGRRALGLPSPLELAAPSLVPNASASPRPVSCRRAPPRPVPGAARWR 97
Query: 61 GDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE 120
G + PG G +R L + + + E E R +G R R E
Sbjct: 98 GRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRRERELGTDARVGDGERELRPDARGRAE 157
Query: 121 ASGSDVVLGG 130
A SD V G
Sbjct: 158 AVCSDHVGAG 167
>gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]
Length = 2003
Score = 37.0 bits (84), Expect = 0.016
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 12/173 (6%)
Query: 63 EDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTEAS 122
E E A R R L+E + +EEEA G E RRR ++ T+
Sbjct: 1375 EQLEEEAAARERAGRELQTAQAQLSE-WRRRQEEEAGALEAGEEARRRAAREAEALTQRL 1433
Query: 123 GSDVVLGGRSGAGDSRVLQELQERP---SQRHQMLYLRQKDANELKTILRELKYRIGIQS 179
R G R+ QEL + Q+ Q++ +K + +L E +
Sbjct: 1434 AEKTETVDRLERGRRRLQQELDDATMDLEQQRQLVSTLEKKQRKFDQLLAE-------EK 1486
Query: 180 AKLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAV-ARLE 231
A +LR +++++R + + + +A+ +++ + + RQ+RA+ A LE
Sbjct: 1487 AAVLRAVEERERAEAEGREREARALSLTRALEEEQEAREELERQNRALRAELE 1539
>gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens]
Length = 1995
Score = 37.0 bits (84), Expect = 0.016
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 12/173 (6%)
Query: 63 EDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTEAS 122
E E A R R L+E + +EEEA G E RRR ++ T+
Sbjct: 1367 EQLEEEAAARERAGRELQTAQAQLSE-WRRRQEEEAGALEAGEEARRRAAREAEALTQRL 1425
Query: 123 GSDVVLGGRSGAGDSRVLQELQERP---SQRHQMLYLRQKDANELKTILRELKYRIGIQS 179
R G R+ QEL + Q+ Q++ +K + +L E +
Sbjct: 1426 AEKTETVDRLERGRRRLQQELDDATMDLEQQRQLVSTLEKKQRKFDQLLAE-------EK 1478
Query: 180 AKLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAV-ARLE 231
A +LR +++++R + + + +A+ +++ + + RQ+RA+ A LE
Sbjct: 1479 AAVLRAVEERERAEAEGREREARALSLTRALEEEQEAREELERQNRALRAELE 1531
>gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]
Length = 2036
Score = 37.0 bits (84), Expect = 0.016
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 12/173 (6%)
Query: 63 EDTEPGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTEAS 122
E E A R R L+E + +EEEA G E RRR ++ T+
Sbjct: 1408 EQLEEEAAARERAGRELQTAQAQLSE-WRRRQEEEAGALEAGEEARRRAAREAEALTQRL 1466
Query: 123 GSDVVLGGRSGAGDSRVLQELQERP---SQRHQMLYLRQKDANELKTILRELKYRIGIQS 179
R G R+ QEL + Q+ Q++ +K + +L E +
Sbjct: 1467 AEKTETVDRLERGRRRLQQELDDATMDLEQQRQLVSTLEKKQRKFDQLLAE-------EK 1519
Query: 180 AKLLRHLKQKDRLLHKVQRNCDIVTACLQAVSQKRTWQNSMLRQSRAV-ARLE 231
A +LR +++++R + + + +A+ +++ + + RQ+RA+ A LE
Sbjct: 1520 AAVLRAVEERERAEAEGREREARALSLTRALEEEQEAREELERQNRALRAELE 1572
>gi|11321642 bromodomain containing protein 1 [Homo sapiens]
Length = 1058
Score = 36.6 bits (83), Expect = 0.021
Identities = 36/102 (35%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 28 LESQEEETIPAAPPA-----PRLRGAAERPRRSRDTWDGDEDTEPGEACGGRTSRTASLV 82
LE EE+ P A PRL + +RSR T GD + E E+ G R L
Sbjct: 769 LEGFEEDGAALGPEAGEEVLPRLETLLQPRKRSRSTC-GDSEVEE-ESPGKR------LD 820
Query: 83 SGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTEASGS 124
+GL N E+E GGG G + RRR + +SS +S S
Sbjct: 821 AGLTNGFGGARSEQEP-GGGLGRKATPRRRCASESSISSSNS 861
>gi|113421234 PREDICTED: similar to NG5 protein [Homo sapiens]
Length = 288
Score = 36.2 bits (82), Expect = 0.028
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 5 PTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDED 64
P G PG + + +GGG A E PAAP P++ P+ R DED
Sbjct: 44 PFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDED 103
Query: 65 TEPGEACGGRTSRTAS 80
GEA G S+ A+
Sbjct: 104 GAAGEA--GPVSKAAA 117
>gi|113420954 PREDICTED: similar to NG5 protein [Homo sapiens]
Length = 288
Score = 36.2 bits (82), Expect = 0.028
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 5 PTGGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDED 64
P G PG + + +GGG A E PAAP P++ P+ R DED
Sbjct: 44 PFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDED 103
Query: 65 TEPGEACGGRTSRTAS 80
GEA G S+ A+
Sbjct: 104 GAAGEA--GPVSKAAA 117
>gi|47777330 hypothetical protein LOC115939 [Homo sapiens]
Length = 312
Score = 35.4 bits (80), Expect = 0.047
Identities = 37/102 (36%), Positives = 42/102 (41%), Gaps = 25/102 (24%)
Query: 13 LRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERP----RRSRDTWDGD--EDTE 66
L+ E EF E+ QEEE P + R G RP R DT D D ED
Sbjct: 215 LQAEQEFLANAKES---PQEEEIDPFDVDSGREFGNPNRPVASTRLPSDTDDSDASEDPG 271
Query: 67 PGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGR 108
PG GG +S SC EEE+ GRGAE R
Sbjct: 272 PGAERGGASS--------------SCCEEEQTQ--GRGAEAR 297
>gi|21396500 HIRA interacting protein 3 [Homo sapiens]
Length = 556
Score = 34.7 bits (78), Expect = 0.080
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 53 RRSRDTWDGDEDTEPGE--ACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGRR- 109
+R + + +ED+ GE A G R SG ++L + EA GG +G R
Sbjct: 327 KRLSGSSEDEEDSGKGEPTAKGSRKMARLGSTSGEESDLEREVSDSEAGGGPQGERKNRS 386
Query: 110 -----RRRDSLDSSTEASGSDVVLGGRSGAG 135
R+ + SS+ + GS GG++G+G
Sbjct: 387 SKKSSRKGRTRSSSSSSDGSPEAKGGKAGSG 417
>gi|51317366 myosin XVIIIB [Homo sapiens]
Length = 2567
Score = 34.7 bits (78), Expect = 0.080
Identities = 28/79 (35%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 5 PTGGGRPGLR----TELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWD 60
P GG PG R E R G G LE++ E P P L AERPR ++ D
Sbjct: 432 PGKGGWPGSRGQEAEEPCSRAGDGAGALETELE-----GPSQPALEKDAERPRIRKENQD 486
Query: 61 GDEDTEPGEACGGRTSRTA 79
G E G+ R S A
Sbjct: 487 GPAPQEEGKGGQSRDSDQA 505
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 34.7 bits (78), Expect = 0.080
Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 15/118 (12%)
Query: 18 EFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDEDTEPGEACGGRTSR 77
E R G G + ++EE +P PR AA G E+ P + G SR
Sbjct: 356 EDRVGDGPQQEPGEDEERRERSPEGPREEEAA-----------GGEEESPDSSPHGEASR 404
Query: 78 TASLVSGLLNELYSCTEEEEAAGGGRGAEGRRRRRDSLDSSTEASGS--DVVLGGRSG 133
A+ L+ EE A G G A RR D S A G D+ L ++G
Sbjct: 405 GAAEPEAQLSN--HLAEEGPAEGSGEAARVNGRREDGEASEPRALGQEHDITLFVKAG 460
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 34.3 bits (77), Expect = 0.10
Identities = 36/112 (32%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 7 GGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDEDT- 65
G +PGL T RGGGG + E P+ P A + RPRR+R + T
Sbjct: 186 GVHQPGLPTHAALRGGGGGS--EGGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTG 243
Query: 66 EPGEACGGRTSRTASLVSGLLNELYSCTEEEEAA----GGGRG---AEGRRR 110
A G+ SR + V + T AA GG RG A+GR R
Sbjct: 244 RAALARHGQLSRPHAAVRNSSRGRGAATSVSAAARPTRGGARGHRRADGRAR 295
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 34.3 bits (77), Expect = 0.10
Identities = 36/112 (32%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 7 GGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDEDT- 65
G +PGL T RGGGG + E P+ P A + RPRR+R + T
Sbjct: 186 GVHQPGLPTHAALRGGGGGS--EGGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTG 243
Query: 66 EPGEACGGRTSRTASLVSGLLNELYSCTEEEEAA----GGGRG---AEGRRR 110
A G+ SR + V + T AA GG RG A+GR R
Sbjct: 244 RAALARHGQLSRPHAAVRNSSRGRGAATSVSAAARPTRGGARGHRRADGRAR 295
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 34.3 bits (77), Expect = 0.10
Identities = 36/112 (32%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 7 GGGRPGLRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDEDT- 65
G +PGL T RGGGG + E P+ P A + RPRR+R + T
Sbjct: 186 GVHQPGLPTHAALRGGGGGS--EGGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTG 243
Query: 66 EPGEACGGRTSRTASLVSGLLNELYSCTEEEEAA----GGGRG---AEGRRR 110
A G+ SR + V + T AA GG RG A+GR R
Sbjct: 244 RAALARHGQLSRPHAAVRNSSRGRGAATSVSAAARPTRGGARGHRRADGRAR 295
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 33.5 bits (75), Expect = 0.18
Identities = 52/251 (20%), Positives = 85/251 (33%), Gaps = 61/251 (24%)
Query: 22 GGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDEDTEPGEACGGRTSRTASL 81
GGG + E P PP RG R ++ + P + G+T T S
Sbjct: 173 GGGAGGGSGEREGGAPQPPPPRGWRGKGVRAQQRGGSGGEGASPSPSSSSAGKTPGTGSR 232
Query: 82 VSG-------------------LLNEL--YSCTEEEEAAGGGRGAEGRRRRRDSLDSSTE 120
SG L +EL + +E AA + S S+
Sbjct: 233 NSGSGVAGGGSGGGGSYWKEGCLQSELIQFHLKKERAAAAAAAAQMHAKNGGGSSSRSSP 292
Query: 121 ASGSDVVL-----------------------GGRSGAGDSRVL--------QELQERPSQ 149
SG V G SG G Q+LQE+
Sbjct: 293 VSGPPAVCETLAVASASPMAAAAEGPQQSAEGSASGGGMQAAAPPSSQPHPQQLQEQEEM 352
Query: 150 RHQMLYLRQK------DANELKTILRELKYRIGIQSAKLLRHLKQKDRLLHKVQRNCDIV 203
+ +M LR++ + +EL+T + E++ + A L+ ++ + L + +NC I+
Sbjct: 353 QEEMEKLREENETLKNEIDELRTEMDEMRDTFFEEDACQLQEMRHE---LERANKNCRIL 409
Query: 204 TACLQAVSQKR 214
L+ +KR
Sbjct: 410 QYRLRKAERKR 420
>gi|122937398 dynein, cytoplasmic 2, heavy chain 1 [Homo sapiens]
Length = 4314
Score = 33.5 bits (75), Expect = 0.18
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 131 RSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSAKLLRHLKQKD 190
R S +L+ Q+ QM+ + +DA+E KT L LK+RI + K+ + D
Sbjct: 2916 RKAGEQSVLLKTKQDEADAALQMITVSMQDASEQKTELERLKHRIAEEVVKIEERKNKID 2975
Query: 191 RLLHKVQ 197
L +VQ
Sbjct: 2976 DELKEVQ 2982
>gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo
sapiens]
Length = 331
Score = 33.5 bits (75), Expect = 0.18
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 32 EEETIPAAPPAPRLRGAAERPR--RSRDTWDGDEDTEPGEACG 72
E + P+APPAPR A RP+ SR+ + DE+ EPGEA G
Sbjct: 180 EAQAPPSAPPAPRAE-AEVRPKIPGSREAAENDEE-EPGEATG 220
>gi|4757962 cyclin-dependent kinase inhibitor 1B [Homo sapiens]
Length = 198
Score = 33.1 bits (74), Expect = 0.23
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 24 GEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDEDTEPG-------EACGGRTS 76
G ++ +QE + + + PA L GA P S DT D T+P E C G
Sbjct: 97 GACKVPAQESQDVSGSRPAAPLIGA---PANSEDTHLVDPKTDPSDSQTGLAEQCAGIRK 153
Query: 77 RTASLVSGLLNELYSCTEEEEAAG 100
R A+ S N+ + TEE + G
Sbjct: 154 RPATDDSSTQNKRANRTEENVSDG 177
>gi|150170699 kinesin family member 26A [Homo sapiens]
Length = 1882
Score = 33.1 bits (74), Expect = 0.23
Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 33 EETIPAAPPAPRLRGAAERPRRSRDTWDGDEDTEPGEACGGRTSRTASLVSGLLNELYSC 92
EE P P P PRR P G S +S++SG L
Sbjct: 1600 EERPPTGPALPSPYSKVTAPRR------------PQRYSSGHGSDNSSVLSGELPPAMGR 1647
Query: 93 TEEEEAAGGGRGAEGRRRRRDSLDSSTEASGSDVVLGGRSGAGDSRVLQELQERPS--QR 150
T +GG G E RR ++ S++ A S G S +R L+ ++R + QR
Sbjct: 1648 TALFHHSGGSSGYESLRRDSEATGSASSAPDSMSESGAASPGARTRSLKSPKKRATGLQR 1707
Query: 151 HQML 154
+++
Sbjct: 1708 RRLI 1711
>gi|8923009 non-SMC element 4 homolog A [Homo sapiens]
Length = 385
Score = 33.1 bits (74), Expect = 0.23
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 102 GRGAEGRRRRRD-SLDSSTEASGSDVVLGGRSGAGDSRVLQELQERPS 148
GRG EGR R RD D + S S L RS G +R +E ERPS
Sbjct: 7 GRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPS 54
Score = 28.9 bits (63), Expect = 4.4
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 18 EFRGGGGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDEDTEPGEA 70
E RG G + + + +P +PR R + R RR EDTEP ++
Sbjct: 11 EGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLEDTEPSDS 63
>gi|195976782 Paf1/RNA polymerase II complex component [Homo
sapiens]
Length = 710
Score = 32.7 bits (73), Expect = 0.30
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 68 GEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEG-----RRRRRDSLDSSTEAS 122
G C GR + A+ V+ L + +E GG RG+ G +R+ R +DS TE S
Sbjct: 3 GRLCVGRAAAAAAAVAVPL----AGGQEGSPGGGRRGSRGTTMVKKRKGRVVIDSDTEDS 58
Query: 123 GSD 125
GSD
Sbjct: 59 GSD 61
>gi|209862785 anoctamin 2 [Homo sapiens]
Length = 998
Score = 32.3 bits (72), Expect = 0.40
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 17/79 (21%)
Query: 11 PGLRTELEFRGG--GGEARLESQEEETIPAAPPAPRLRGAAERPRRSRDTWDGDEDTEPG 68
PG L + G GG+ Q+ +P P AP L+G + R +PG
Sbjct: 9 PGSPRRLSPQAGSRGGQGPKHGQQCLKMPG-PRAPGLQGGSNR--------------DPG 53
Query: 69 EACGGRTSRTASLVSGLLN 87
+ CGG ++R++S+++ L+
Sbjct: 54 QPCGGESTRSSSVINNYLD 72
>gi|109637763 calpastatin isoform h [Homo sapiens]
Length = 769
Score = 32.3 bits (72), Expect = 0.40
Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 19/129 (14%)
Query: 37 PAAPPAPRLRGAAERPRRSRDTWDGDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEE 96
PAA P PR AA R + ++PGE G + ASL S + Y
Sbjct: 8 PAASPRPRRAAAARRTHEHVSEKTSESPSKPGEKKGSDEKKAASLGSSQSSRTY------ 61
Query: 97 EAAGGGRGAEGRRRRRDSLDSSTEASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYL 156
AGG A + AS +++ ++ E+ SQ ++ +
Sbjct: 62 --AGGTASA-----------TKVSASSGATSKSSSMNPTETKAVKTEPEKKSQSTKLSVV 108
Query: 157 RQKDANELK 165
+K + E K
Sbjct: 109 HEKKSQEGK 117
>gi|109637757 calpastatin isoform e [Homo sapiens]
Length = 756
Score = 32.3 bits (72), Expect = 0.40
Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 19/129 (14%)
Query: 37 PAAPPAPRLRGAAERPRRSRDTWDGDEDTEPGEACGGRTSRTASLVSGLLNELYSCTEEE 96
PAA P PR AA R + ++PGE G + ASL S + Y
Sbjct: 8 PAASPRPRRAAAARRTHEHVSEKTSESPSKPGEKKGSDEKKAASLGSSQSSRTY------ 61
Query: 97 EAAGGGRGAEGRRRRRDSLDSSTEASGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYL 156
AGG A + AS +++ ++ E+ SQ ++ +
Sbjct: 62 --AGGTASA-----------TKVSASSGATSKSSSMNPTETKAVKTEPEKKSQSTKLSVV 108
Query: 157 RQKDANELK 165
+K + E K
Sbjct: 109 HEKKSQEGK 117
>gi|40354197 THAP domain containing 11 [Homo sapiens]
Length = 314
Score = 32.3 bits (72), Expect = 0.40
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 122 SGSDVVLGGRSGAGDSRVLQELQERPSQRHQMLYLRQKDANELKTILRELKYRIGIQSAK 181
+GSD SG + +L++L E+ +L L + E+K +R L+ + AK
Sbjct: 240 TGSDHSYSLSSGTTEEELLRKLNEQ----RDILALMEVKMKEMKGSIRHLR----LTEAK 291
Query: 182 LLRHLKQKDRLL 193
L L++KDRLL
Sbjct: 292 LREELREKDRLL 303
>gi|41393610 Ras association (RalGDS/AF-6) domain family 6 isoform b
[Homo sapiens]
Length = 369
Score = 32.3 bits (72), Expect = 0.40
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 136 DSRVLQELQERPSQRHQMLYLRQKDANELKT-ILRELKYRIGIQSAKLLR----HLKQKD 190
D +LQ L + PS+++ ++L KDA E+ + + + + + + + L R ++
Sbjct: 281 DIPLLQRLLQGPSEKNARIFLMDKDAEEISSDVAQYINFHFSLLESILQRLNEEEKREIQ 340
Query: 191 RLLHKVQRNCDIVTACLQ 208
R++ K + I+ CLQ
Sbjct: 341 RIVTKFNKEKAIILKCLQ 358
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,718,278
Number of Sequences: 37866
Number of extensions: 526732
Number of successful extensions: 2730
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 2626
Number of HSP's gapped (non-prelim): 239
length of query: 250
length of database: 18,247,518
effective HSP length: 100
effective length of query: 150
effective length of database: 14,460,918
effective search space: 2169137700
effective search space used: 2169137700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.