Search of human proteins with 239744145

Search of human proteins with 239744145

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744145 PREDICTED: hypothetical protein XP_002343044 [Homo
sapiens]
         (97 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239744145 PREDICTED: hypothetical protein XP_002343044 [Homo ...   199   4e-52
gi|239755367 PREDICTED: similar to BMS1 homolog, ribosome assemb...   197   2e-51
gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens]      167   2e-42
gi|237858799 adenylate kinase domain containing 1 isoform 1 [Hom...    35   0.013
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa...    33   0.049
gi|38201677 teashirt family zinc finger 1 [Homo sapiens]               32   0.083
gi|34878777 ring finger protein 20 [Homo sapiens]                      31   0.19 
gi|40255052 IQ motif containing with AAA domain 1 [Homo sapiens]       31   0.19 
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa...    31   0.24 
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa...    30   0.32 
gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo sap...    30   0.32 
gi|117553580 adaptor-related protein complex 3, delta 1 subunit ...    30   0.41 
gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo...    30   0.41 
gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo...    30   0.41 
gi|40068059 CBF1 interacting corepressor [Homo sapiens]                30   0.54 
gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo...    29   0.92 
gi|55741661 hypothetical protein LOC57653 [Homo sapiens]               29   0.92 
gi|14150078 hypothetical protein LOC84273 [Homo sapiens]               29   0.92 
gi|27414491 coiled-coil domain containing 28A [Homo sapiens]           29   0.92 
gi|11225260 DNA topoisomerase I [Homo sapiens]                         28   1.2  
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi...    28   1.2  
gi|4506467 radixin [Homo sapiens]                                      28   1.2  
gi|195976782 Paf1/RNA polymerase II complex component [Homo sapi...    28   1.2  
gi|153945728 microtubule-associated protein 1B [Homo sapiens]          28   1.2  
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]            28   1.6  
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho...    28   1.6  
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap...    28   1.6  
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap...    28   1.6  
gi|70980549 programmed cell death 11 [Homo sapiens]                    28   1.6  
gi|4557563 excision repair cross-complementing rodent repair def...    28   2.1  

>gi|239744145 PREDICTED: hypothetical protein XP_002343044 [Homo
          sapiens]
          Length = 97

 Score =  199 bits (506), Expect = 4e-52
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  METKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQSAVWMARSFHRT 60
          METKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQSAVWMARSFHRT
Sbjct: 1  METKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQSAVWMARSFHRT 60

Query: 61 QDLKTKKHRIPVVDRTPLEPPPIVVVVTGPPKLERAL 97
          QDLKTKKHRIPVVDRTPLEPPPIVVVVTGPPKLERAL
Sbjct: 61 QDLKTKKHRIPVVDRTPLEPPPIVVVVTGPPKLERAL 97


>gi|239755367 PREDICTED: similar to BMS1 homolog, ribosome
          assembly protein [Homo sapiens]
          Length = 97

 Score =  197 bits (500), Expect = 2e-51
 Identities = 96/97 (98%), Positives = 96/97 (98%)

Query: 1  METKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQSAVWMARSFHRT 60
          METKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQSAVWMARSFHRT
Sbjct: 1  METKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQSAVWMARSFHRT 60

Query: 61 QDLKTKKHRIPVVDRTPLEPPPIVVVVTGPPKLERAL 97
          QDLKTKKHRIPVVDRTPLEPPPIVVVV GPPKLERAL
Sbjct: 61 QDLKTKKHRIPVVDRTPLEPPPIVVVVMGPPKLERAL 97


>gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens]
          Length = 1282

 Score =  167 bits (422), Expect = 2e-42
 Identities = 83/96 (86%), Positives = 87/96 (90%)

Query: 1  METKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQSAVWMARSFHRT 60
          ME KDQKK RKKNSGPK  KKKKR LQDLQLGDEEDA+KRNPKAFAVQSAV MARSFHRT
Sbjct: 1  MEAKDQKKHRKKNSGPKAAKKKKRLLQDLQLGDEEDARKRNPKAFAVQSAVRMARSFHRT 60

Query: 61 QDLKTKKHRIPVVDRTPLEPPPIVVVVTGPPKLERA 96
          QDLKTKKH IPVVDRTPLEPPPIVVVV GPPK+ ++
Sbjct: 61 QDLKTKKHHIPVVDRTPLEPPPIVVVVMGPPKVGKS 96


>gi|237858799 adenylate kinase domain containing 1 isoform 1 [Homo
           sapiens]
          Length = 1911

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 22/103 (21%)

Query: 2   ETKDQKKQRKKNSGPKDEKKKKRHLQD--------------LQLGDEEDAQKRNPKAFAV 47
           E  ++ ++ ++  G    K++KRHL D              LQ G+ E+A K   K +  
Sbjct: 905 EVDEELEEEEEEEGEDKMKERKRHLGDTKHFCPVVLKENFILQPGNTEEAAKYREKIYYF 964

Query: 48  QSAVWMARSFHRTQDLKTKKHRIPVVDRTPLEPPPIVVVVTGP 90
            SA    +     +D         V    PL+ PP+ + + GP
Sbjct: 965 SSAEAKEKFLEHPEDY--------VAHEEPLKAPPLRICLVGP 999


>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
           sapiens]
          Length = 1912

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 8   KQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQSAVW 52
           K++KK  GPK EKK K   ++ +  +++D   + PK+ A     W
Sbjct: 114 KKKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSKEPKSSAQLLEDW 158


>gi|38201677 teashirt family zinc finger 1 [Homo sapiens]
          Length = 1032

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 4   KDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQSAVWMARSFHRTQDL 63
           +D  + +      +  K +KR L +++   +EDAQK       V   ++   SF   QDL
Sbjct: 227 RDDNRDKDSEKTKRWSKPRKRSLMEME--GKEDAQK-------VLKCMYCGHSFESLQDL 277

Query: 64  KTKKHRIPVVDRTPLEPPPIVVVVTGPPKLERAL 97
                +     + PL+ P   +    P   +RAL
Sbjct: 278 SVHMIKTKHYQKVPLKEPVPAITKLVPSTKKRAL 311


>gi|34878777 ring finger protein 20 [Homo sapiens]
          Length = 975

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 7   KKQRKKNSGPKDEKKKKRHLQDL--QLGDEEDAQKRNPKAFAVQSAVWMARSFHRTQDLK 64
           K+QR K      EKK K  L+DL  +L D ED +K+  K  A + A+   R+     +  
Sbjct: 655 KEQRDKVQLMAAEKKSKAELEDLRQRLKDLEDKEKKENKKMADEDALRKIRAVEEQIEYL 714

Query: 65  TKK 67
            KK
Sbjct: 715 QKK 717


>gi|40255052 IQ motif containing with AAA domain 1 [Homo sapiens]
          Length = 822

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 2   ETKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAF 45
           E K++KK++KK   PK  KK+K+  ++ +  +E++  K +P  F
Sbjct: 349 EEKNKKKKKKKEKQPKKAKKQKKGTKE-KNKEEDEKWKMSPSLF 391


>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
           sapiens]
          Length = 1954

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 16/45 (35%), Positives = 22/45 (48%)

Query: 8   KQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQSAVW 52
           K++KK    K EKK KR  +D    D +D   + PK+     A W
Sbjct: 97  KKKKKKLKDKKEKKAKRKKKDEDEDDNDDGCLKEPKSSGQLMAEW 141


>gi|84043963 eukaryotic translation initiation factor 5B [Homo
           sapiens]
          Length = 1220

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 15/72 (20%), Positives = 35/72 (48%)

Query: 2   ETKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQSAVWMARSFHRTQ 61
           + +D+K   +K+SG   +KK  + +      D +D + +  +A+         R    ++
Sbjct: 563 DEEDEKVSDEKDSGKTLDKKPSKEMSSDSEYDSDDDRTKEERAYDKAKRRIEKRRLEHSK 622

Query: 62  DLKTKKHRIPVV 73
           ++ T+K R P++
Sbjct: 623 NVNTEKLRAPII 634



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 12/51 (23%)

Query: 2   ETKDQKKQRKKNSGPKDEKKKKRH----------LQD--LQLGDEEDAQKR 40
           E   +KK +KK  G K+EK+K++           +Q+   +L +EE+ QKR
Sbjct: 310 EGDKKKKDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKR 360


>gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo
           sapiens]
          Length = 1555

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 3   TKDQKKQRKKNSGPKDEKKK----KRHLQDLQLGDEEDAQKRNPKAFAVQSAVWMARSFH 58
           TKD K Q  ++    D  K+    K+HLQD   G ++D +++   A        M  S H
Sbjct: 381 TKDLKNQESESMRLSDMNKRDPRLKKHLQDKTDGKDDDVKEKRKTAEKKDKDEHMKSSEH 440

Query: 59  RTQDLKTK 66
           R    + K
Sbjct: 441 RLAGSRNK 448


>gi|117553580 adaptor-related protein complex 3, delta 1 subunit
           isoform 2 [Homo sapiens]
          Length = 1153

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 12/39 (30%), Positives = 26/39 (66%)

Query: 4   KDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNP 42
           K++KK+++K   PK +KKK R  ++ +   ++ ++K+ P
Sbjct: 858 KEKKKEKEKKKSPKPKKKKHRKEKEERTKGKKKSKKQPP 896



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 4   KDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQSAVWMARSFHRTQDL 63
           KD     KK+  PK ++KK +  +  +   +E  +K++PK    +          RT+  
Sbjct: 832 KDVPMVEKKSKKPKKKEKKHKEKERDKEKKKEKEKKKSPKP---KKKKHRKEKEERTKGK 888

Query: 64  KTKKHRIPVVDRTPLEPPPIVVVVTGPPKLER 95
           K  K + P  +    EP     V  G P+ E+
Sbjct: 889 KKSKKQPPGSEEAAGEP-----VQNGAPEEEQ 915


>gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo
           sapiens]
          Length = 1272

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 16/70 (22%), Positives = 35/70 (50%)

Query: 2   ETKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQSAVWMARSFHRTQ 61
           E + +KK+ ++    ++E++KK+  Q  +  +EE A +   K  ++Q         H  +
Sbjct: 83  EEESKKKEEEEKKKHQEEERKKQEEQAKRQQEEEAAAQMKEKEESIQLHQEAWERHHLRK 142

Query: 62  DLKTKKHRIP 71
           +L++K    P
Sbjct: 143 ELRSKNQNAP 152



 Score = 29.3 bits (64), Expect = 0.71
 Identities = 12/44 (27%), Positives = 28/44 (63%)

Query: 5   DQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQ 48
           ++K + ++ S  K+E++KK+H ++ +   EE A+++  +  A Q
Sbjct: 77  EEKVKAEEESKKKEEEEKKKHQEEERKKQEEQAKRQQEEEAAAQ 120


>gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo
           sapiens]
          Length = 1272

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 16/70 (22%), Positives = 35/70 (50%)

Query: 2   ETKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQSAVWMARSFHRTQ 61
           E + +KK+ ++    ++E++KK+  Q  +  +EE A +   K  ++Q         H  +
Sbjct: 83  EEESKKKEEEEKKKHQEEERKKQEEQAKRQQEEEAAAQMKEKEESIQLHQEAWERHHLRK 142

Query: 62  DLKTKKHRIP 71
           +L++K    P
Sbjct: 143 ELRSKNQNAP 152



 Score = 29.3 bits (64), Expect = 0.71
 Identities = 12/44 (27%), Positives = 28/44 (63%)

Query: 5   DQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQ 48
           ++K + ++ S  K+E++KK+H ++ +   EE A+++  +  A Q
Sbjct: 77  EEKVKAEEESKKKEEEEKKKHQEEERKKQEEQAKRQQEEEAAAQ 120


>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
          Length = 450

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 2   ETKDQKKQRKKN---------SGPKDEKKKKRHLQDLQLGDEE-DAQKRNPKAFAVQSAV 51
           E K Q+K+RKKN         S  KD+ KK++  ++L       +  K  P+    +S+ 
Sbjct: 286 EKKIQRKKRKKNKCSGHNNSDSEEKDKSKKRKLHEELSSSHHNREKAKEKPRFLKHESSR 345

Query: 52  WMARSFHRTQDLKTKKHR 69
             ++  H   D K++ H+
Sbjct: 346 EDSKWSHSDSDKKSRTHK 363



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 1   METKDQKKQRKKNSGPKDEKKKKRH 25
           +E K +KK RKK    K   K K+H
Sbjct: 231 LEKKKKKKDRKKKKFQKSRSKHKKH 255


>gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo
           sapiens]
          Length = 598

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 50  AVWMARSFHRTQDLKTKKHRIPVVDRTPLEPPP 82
           AV M +   RT  LK ++ R+P   ++P EP P
Sbjct: 325 AVGMVKEVVRTDSLKGRRGRLPSKPKSPQEPSP 357


>gi|55741661 hypothetical protein LOC57653 [Homo sapiens]
          Length = 1646

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 10/38 (26%), Positives = 25/38 (65%)

Query: 2   ETKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQK 39
           + K+++++ +K    K+EK+ +   + L +G+EED ++
Sbjct: 910 DEKEEEEEEEKLEEEKEEKEAQEEQESLSVGEEEDKEE 947


>gi|14150078 hypothetical protein LOC84273 [Homo sapiens]
          Length = 698

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 16  PKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQSAVWMARSFHRTQDLKTKKHRIPVVDR 75
           P+ +  +++ LQ+LQ   EE+ ++R  +           R   R Q+L+ +    PVV  
Sbjct: 81  PEPQPTREKQLQELQQQQEEEERQRQQR-----------REERRQQNLRARSREHPVVGH 129

Query: 76  TPLEPPPIVVVVTG 89
                PP  V  +G
Sbjct: 130 PDPALPPSGVNCSG 143


>gi|27414491 coiled-coil domain containing 28A [Homo sapiens]
          Length = 274

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 11/71 (15%)

Query: 27  QDLQLGDEEDAQKRNPKAFAVQSAVWMARSFHRTQDLKTKKHRIPVVDRTPLEPPPIVVV 86
           ++L+  +E   ++R+PK+F          S H TQ +  KK+ IPV   T     P    
Sbjct: 86  KELKTMEERKVKRRSPKSF----------SAHCTQVVNAKKNAIPVSKSTGFS-NPASQS 134

Query: 87  VTGPPKLERAL 97
            +  PKL+R +
Sbjct: 135 TSQRPKLKRVM 145


>gi|11225260 DNA topoisomerase I [Homo sapiens]
          Length = 765

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 8/87 (9%)

Query: 1   METKDQKKQRKKNSGPKDE---KKKKRHLQDLQLGDEEDAQKRNPKAFAVQSAVWMARSF 57
           ++T+D KK++K+    +++   KK K   +D ++  E D +K+ PK    Q   W     
Sbjct: 152 IKTEDTKKEKKRKLEEEEDGKLKKPKNKDKDKKV-PEPDNKKKKPKKEEEQKWKWWEEER 210

Query: 58  HRTQDLKTK--KHRIPVVDRTPLEPPP 82
           +  + +K K  +H+ PV    P EP P
Sbjct: 211 Y-PEGIKWKFLEHKGPVF-APPYEPLP 235


>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 123

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 2   ETKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPK 43
           E +++K++ +K  G + +KKKKR  ++    +EE  +KR  K
Sbjct: 81  EEEEEKEEEEKEEGRRRKKKKKRRRKE---EEEEKKKKRRRK 119



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 2  ETKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPK 43
          E + ++K+++K    + EKKKK    + +   EE+ +KR  K
Sbjct: 24 EKEGKRKEKRKEKRKEKEKKKKTKETEKRKEKEEEEKKRKRK 65



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 10/42 (23%), Positives = 26/42 (61%)

Query: 2  ETKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPK 43
          +TK+ +K+++K    K  K+K++  ++ +  +EE+ ++   K
Sbjct: 45 KTKETEKRKEKEEEEKKRKRKRKKKKEEEEREEEEEEEEEEK 86


>gi|4506467 radixin [Homo sapiens]
          Length = 583

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 35  EDAQKRNPKAFAVQSAVWMARSFHRTQDLKTKKHRIPVVDRTPLEPPPIVVV 86
           E+A+K+  +    ++  W  ++F   +DL+  K  +  V   P  PPP  V+
Sbjct: 432 EEAKKKKEE----EATEWQHKAFAAQEDLEKTKEELKTVMSAPPPPPPPPVI 479


>gi|195976782 Paf1/RNA polymerase II complex component [Homo
           sapiens]
          Length = 710

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 4   KDQKKQRKKNSGPKDEKKKKRHLQDLQL--GDEEDAQKRNPK 43
           K +KK++KK    + EKKK   +Q+ Q+   ++E   KR+ K
Sbjct: 233 KKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEK 274


>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
          Length = 2468

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 2   ETKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPK 43
           E K+ KK+ KK + PK+ KK+ +  +  ++  EE   K+  K
Sbjct: 692 EKKEPKKEVKKETPPKEVKKEVKKEEKKEVKKEEKEPKKEIK 733


>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 245

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 10/50 (20%)

Query: 4   KDQKKQRKKNSGPKD----------EKKKKRHLQDLQLGDEEDAQKRNPK 43
           ++++K+RK+  G K+          E+KK+R  ++ + G+E++ +K+  K
Sbjct: 71  REREKERKRERGKKEKKGERKKEERERKKRRREKENKEGEEKEKRKKKEK 120



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 9/42 (21%), Positives = 26/42 (61%)

Query: 2   ETKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPK 43
           E K++KK+ +K  G K+E++K++  ++ +  +    +++  +
Sbjct: 159 ERKERKKRERKQVGEKEEERKEKERKERKKRERNRKERKKER 200



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 4/42 (9%)

Query: 2   ETKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPK 43
           E + +K++R+K    K+ KK++R     Q+G++E+ +K   +
Sbjct: 146 ERERKKEEREKERERKERKKRERK----QVGEKEEERKEKER 183



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 2   ETKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPK 43
           E +++KK+RKK    K+E+KK+R         E++  KR  K
Sbjct: 204 ERRERKKERKK----KEERKKERQKDRQTNWREKERGKRERK 241


>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
           sapiens]
          Length = 929

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 15/87 (17%)

Query: 2   ETKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQSAVWMARSFHRTQ 61
           E K++ K+++K    K EKKKK+  +  +   E + +KR  +               R +
Sbjct: 691 EEKEKVKEKEKKKDKK-EKKKKKEKEKEKKEKEREKEKRERE--------------KREK 735

Query: 62  DLKTKKHRIPVVDRTPLEPPPIVVVVT 88
           + +  KH    V+   L P P++  +T
Sbjct: 736 EKEKHKHEKIKVEPVALAPSPVIPRLT 762


>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
          Length = 1758

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 2    ETKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQK 39
            E++D KK++KK    K +K KK        G E + +K
Sbjct: 1688 ESQDSKKKKKKKEKKKHKKHKKHKKHKKHAGTEVELEK 1725



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 1    METKDQK-KQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQSAVWMARSFHR 59
            + TK++K K+  + + P D K +KR  +  + G ++D +  + K   ++    +  S  R
Sbjct: 1089 LTTKEEKAKKPNEKNKPLDNKGEKRKRKTEEKGVDKDFESSSMKISKLEVTEIVKPSPKR 1148

Query: 60   TQDLKTKK-HRIPVVDRTPLEPP 81
              +  T+K  R P  D+  L  P
Sbjct: 1149 KMEPDTEKMDRTPEKDKISLSAP 1171


>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
          Length = 1792

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 2    ETKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQK 39
            E++D KK++KK    K +K KK        G E + +K
Sbjct: 1722 ESQDSKKKKKKKEKKKHKKHKKHKKHKKHAGTEVELEK 1759



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 1    METKDQK-KQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKAFAVQSAVWMARSFHR 59
            + TK++K K+  + + P D K +KR  +  + G ++D +  + K   ++    +  S  R
Sbjct: 1123 LTTKEEKAKKPNEKNKPLDNKGEKRKRKTEEKGVDKDFESSSMKISKLEVTEIVKPSPKR 1182

Query: 60   TQDLKTKK-HRIPVVDRTPLEPP 81
              +  T+K  R P  D+  L  P
Sbjct: 1183 KMEPDTEKMDRTPEKDKISLSAP 1205


>gi|70980549 programmed cell death 11 [Homo sapiens]
          Length = 1871

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 12/43 (27%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 2    ETKDQKKQRKKNSGPKDEKKKKRHLQDLQLGDEEDAQKRNPKA 44
            E +DQK ++K     ++EKK ++  +++++  +E  Q + P+A
Sbjct: 1425 EERDQKGEKKNQK--RNEKKNQKGQEEVEMPSKEKQQPQKPQA 1465


>gi|4557563 excision repair cross-complementing rodent repair
          deficiency, complementation group 3 [Homo sapiens]
          Length = 782

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 11 KKNSGPKDEKK-KKRHLQDLQLGDEEDAQKRNPKAFAVQSA 50
          K++   +D+KK +KRH +D +  DEEDA   +P+  AV SA
Sbjct: 3  KRDRADRDKKKSRKRHYEDEE-DDEEDAPGNDPQE-AVPSA 41


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.130    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,740,452
Number of Sequences: 37866
Number of extensions: 200185
Number of successful extensions: 1554
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1202
Number of HSP's gapped (non-prelim): 313
length of query: 97
length of database: 18,247,518
effective HSP length: 68
effective length of query: 29
effective length of database: 15,672,630
effective search space: 454506270
effective search space used: 454506270
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.