Guide to the Human Genome
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Name: LOC100289722 Sequence: fasta or formatted (269aa) NCBI GI: 239750617
Description:

PREDICTED: hypothetical protein XP_002347474

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         15           3
 C cysteine            4.5         12           1
 D aspartate           5.6         15           1
 E glutamate           2.6          7           1
 F phenylalanine       2.2          6           1
 G glycine             7.4         20           2
 H histidine           5.2         14           2
 I isoleucine          1.9          5           1
 K lysine              0.4          1           1
 L leucine            26.4         71           4
 M methionine          1.1          3           1
 N asparagine          1.1          3           1
 P proline             4.5         12           2
 Q glutamine           8.6         23           2
 R arginine            2.6          7           1
 S serine              8.6         23           3
 T threonine           2.6          7           1
 V valine              8.2         22           3
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347474 
LOC100288922          1.000   PREDICTED: hypothetical protein XP_002343309 
LOC100293136          0.014   PREDICTED: hypothetical protein 
LOC100290831          0.014   PREDICTED: hypothetical protein XP_002347799 
LOC100287562          0.014   PREDICTED: hypothetical protein XP_002343591 
TMEM88B               0.010   PREDICTED: hypothetical protein LOC643965 
TMEM88B               0.010   PREDICTED: hypothetical protein LOC643965 
LOC100294001          0.008   PREDICTED: hypothetical protein 
LOC100290969          0.008   PREDICTED: hypothetical protein XP_002347122 
LOC100289446          0.008   PREDICTED: hypothetical protein XP_002344250 
MUC4                  0.008   mucin 4 isoform a 
MUC4                  0.008   mucin 4 isoform e 
MUC4                  0.008   mucin 4 isoform d 
PRKDC                 0.006   protein kinase, DNA-activated, catalytic polypeptid...
PRKDC                 0.006   protein kinase, DNA-activated, catalytic polypeptide...
LOC731751             0.006   PREDICTED: similar to protein kinase, DNA-activated...
ADAM12                0.006   ADAM metallopeptidase domain 12 isoform 2 preproprot...
ADAM12                0.006   ADAM metallopeptidase domain 12 isoform 1 preproprot...
MDN1                  0.006   MDN1, midasin homolog 
C18orf8               0.006   colon cancer-associated protein Mic1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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