Guide to the Human Genome
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Name: LOC100129848 Sequence: fasta or formatted (227aa) NCBI GI: 169172722
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {227aa} PREDICTED: hypothetical protein
alt mRNA {227aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         18           1
 C cysteine            1.3          3           1
 D aspartate           2.6          6           1
 E glutamate           5.3         12           2
 F phenylalanine       3.1          7           1
 G glycine             9.7         22           2
 H histidine           6.6         15           1
 I isoleucine          1.8          4           1
 K lysine              1.8          4           1
 L leucine            17.2         39           4
 M methionine          2.2          5           1
 N asparagine          1.3          3           1
 P proline             7.9         18           1
 Q glutamine           5.3         12           1
 R arginine            7.0         16           1
 S serine              6.6         15           2
 T threonine           3.1          7           1
 V valine              5.3         12           1
 W tryptophan          1.8          4           1
 Y tyrosine            2.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129848          1.000   PREDICTED: hypothetical protein 
LOC100129848          1.000   PREDICTED: hypothetical protein 
SMARCA4               0.013   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.013   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.013   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.013   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.013   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.013   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.013   SWI/SNF-related matrix-associated actin-dependent re...
IGSF2                 0.011   immunoglobulin superfamily, member 2 
LOC100294001          0.009   PREDICTED: hypothetical protein 
LOC100290969          0.009   PREDICTED: hypothetical protein XP_002347122 
LOC100289446          0.009   PREDICTED: hypothetical protein XP_002344250 
SHBG                  0.009   sex hormone-binding globulin isoform 3 precursor [H...
SHBG                  0.009   sex hormone-binding globulin isoform 2 precursor [H...
SHBG                  0.009   sex hormone-binding globulin isoform 1 precursor [Hom...
SHBG                  0.009   sex hormone-binding globulin isoform 4 precursor [H...
DCTN1                 0.009   dynactin 1 isoform 2 
DCTN1                 0.009   dynactin 1 isoform 1 
DCTN1                 0.007   dynactin 1 isoform 4 
DCTN1                 0.007   dynactin 1 isoform 3 
LOC100292184          0.007   PREDICTED: hypothetical protein 
LOC100292727          0.007   PREDICTED: hypothetical protein 
KIAA0467              0.007   hypothetical protein LOC23334 
LOC401399             0.007   hypothetical protein LOC401399 
LOC649264             0.007   PREDICTED: similar to hCG40360 
MCC                   0.007   mutated in colorectal cancers isoform 1 
INTS5                 0.007   integrator complex subunit 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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