Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239743900
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743900 PREDICTED: hypothetical protein XP_002342969 [Homo
sapiens]
(72 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755107 PREDICTED: hypothetical protein XP_002346216 [Homo ... 150 2e-37
gi|239743900 PREDICTED: hypothetical protein XP_002342969 [Homo ... 150 2e-37
gi|239743889 PREDICTED: hypothetical protein XP_002342998 [Homo ... 145 5e-36
gi|239756978 PREDICTED: hypothetical protein XP_002345135 [Homo ... 32 0.082
gi|239757425 PREDICTED: hypothetical protein XP_002345433 [Homo ... 32 0.11
gi|239751942 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|239746425 PREDICTED: hypothetical protein XP_002344219 [Homo ... 32 0.11
gi|239751010 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|24415404 MDN1, midasin homolog [Homo sapiens] 30 0.31
gi|38569398 integrin, alpha 10 precursor [Homo sapiens] 29 0.91
gi|134142822 zinc finger protein 133 [Homo sapiens] 28 1.2
gi|27545332 zinc finger protein 133 [Homo sapiens] 28 1.2
gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo sapi... 28 1.5
gi|56090146 jumonji domain containing 8 [Homo sapiens] 28 1.5
gi|122937398 dynein, cytoplasmic 2, heavy chain 1 [Homo sapiens] 28 2.0
gi|239751163 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|239745648 PREDICTED: similar to predicted protein [Homo sapiens] 28 2.0
gi|24497501 forkhead box A1 [Homo sapiens] 27 2.6
gi|239752933 PREDICTED: hypothetical protein [Homo sapiens] 27 3.4
gi|7019349 gremlin-1 precursor [Homo sapiens] 27 4.5
gi|239755215 PREDICTED: similar to hCG2022304 [Homo sapiens] 27 4.5
gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo ... 27 4.5
gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo ... 27 4.5
gi|239743970 PREDICTED: hypothetical protein XP_002344248 [Homo ... 27 4.5
gi|170650661 ectonucleotide pyrophosphatase/phosphodiesterase 1 ... 26 5.9
gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo sapiens] 26 5.9
gi|169204510 PREDICTED: hypothetical protein [Homo sapiens] 26 5.9
gi|239754651 PREDICTED: hypothetical protein XP_002346061 [Homo ... 26 5.9
gi|169205117 PREDICTED: hypothetical protein [Homo sapiens] 26 5.9
gi|239749205 PREDICTED: hypothetical protein XP_002346953 [Homo ... 26 5.9
>gi|239755107 PREDICTED: hypothetical protein XP_002346216 [Homo
sapiens]
Length = 72
Score = 150 bits (380), Expect = 2e-37
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 1 MLGAVEGGRLRAGTPPASRLLHRRAGQAWSPPWEGPAGDGEMEGRLTRALPGARRRLLLG 60
MLGAVEGGRLRAGTPPASRLLHRRAGQAWSPPWEGPAGDGEMEGRLTRALPGARRRLLLG
Sbjct: 1 MLGAVEGGRLRAGTPPASRLLHRRAGQAWSPPWEGPAGDGEMEGRLTRALPGARRRLLLG 60
Query: 61 ASKTVPPRNERV 72
ASKTVPPRNERV
Sbjct: 61 ASKTVPPRNERV 72
>gi|239743900 PREDICTED: hypothetical protein XP_002342969 [Homo
sapiens]
Length = 72
Score = 150 bits (380), Expect = 2e-37
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 1 MLGAVEGGRLRAGTPPASRLLHRRAGQAWSPPWEGPAGDGEMEGRLTRALPGARRRLLLG 60
MLGAVEGGRLRAGTPPASRLLHRRAGQAWSPPWEGPAGDGEMEGRLTRALPGARRRLLLG
Sbjct: 1 MLGAVEGGRLRAGTPPASRLLHRRAGQAWSPPWEGPAGDGEMEGRLTRALPGARRRLLLG 60
Query: 61 ASKTVPPRNERV 72
ASKTVPPRNERV
Sbjct: 61 ASKTVPPRNERV 72
>gi|239743889 PREDICTED: hypothetical protein XP_002342998 [Homo
sapiens]
Length = 72
Score = 145 bits (367), Expect = 5e-36
Identities = 70/72 (97%), Positives = 70/72 (97%)
Query: 1 MLGAVEGGRLRAGTPPASRLLHRRAGQAWSPPWEGPAGDGEMEGRLTRALPGARRRLLLG 60
MLGAVEGGRLRAGTPPASRLL RRAGQAWSPPWEGPAGDGEMEGR TRALPGARRRLLLG
Sbjct: 1 MLGAVEGGRLRAGTPPASRLLRRRAGQAWSPPWEGPAGDGEMEGRCTRALPGARRRLLLG 60
Query: 61 ASKTVPPRNERV 72
ASKTVPPRNERV
Sbjct: 61 ASKTVPPRNERV 72
>gi|239756978 PREDICTED: hypothetical protein XP_002345135 [Homo
sapiens]
Length = 187
Score = 32.3 bits (72), Expect = 0.082
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 2 LGAVEGGRLRAGTPPASRLLHRRAGQAWSPPWEGPAGDGEMEGRLTRALPGARR 55
L V GG R+G P RR + W EGP G E+ G R+ G RR
Sbjct: 93 LAEVRGGARRSGRGP------RRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRR 140
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 2 LGAVEGGRLRAGTPPASRLLHRRAGQAWSPPWEGPAGDGEMEGRLTRALPG 52
L V GG R+G P RR + W EGP G E+ RA+ G
Sbjct: 124 LAEVRGGARRSGRGP------RRGPEVWPRSEEGPGGLAEVIIVKPRAMRG 168
>gi|239757425 PREDICTED: hypothetical protein XP_002345433 [Homo
sapiens]
Length = 67
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 3 GAVEGGRLRAGTPPASRLLHR------RAGQAWSPPWEGPAGDGEMEGR 45
G+ R R G P A R R A A SPPW G A +G + GR
Sbjct: 18 GSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAEGRLGGR 66
>gi|239751942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 67
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 3 GAVEGGRLRAGTPPASRLLHR------RAGQAWSPPWEGPAGDGEMEGR 45
G+ R R G P A R R A A SPPW G A +G + GR
Sbjct: 18 GSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAEGRLGGR 66
>gi|239746425 PREDICTED: hypothetical protein XP_002344219 [Homo
sapiens]
Length = 67
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 3 GAVEGGRLRAGTPPASRLLHR------RAGQAWSPPWEGPAGDGEMEGR 45
G+ R R G P A R R A A SPPW G A +G + GR
Sbjct: 18 GSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAEGRLGGR 66
>gi|239751010 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 2 LGAVEGGRLRA-GTPPASRLLHRRAGQAWSPPWEGPAGDGEMEG 44
LG+ GG RA G PPA R R G+ SP W GP G G
Sbjct: 157 LGSNRGGGCRARGAPPARRTPARSPGRR-SPGWGGPCTPGGGSG 199
>gi|24415404 MDN1, midasin homolog [Homo sapiens]
Length = 5596
Score = 30.4 bits (67), Expect = 0.31
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 25 AGQAWSPPWEGPAGDGEMEGRLTRALPGARRRL 57
AGQA P W A +EG L R LP R+R+
Sbjct: 4032 AGQATIPEWCQGAAPSGLEGELLRRLPKLRKRM 4064
>gi|38569398 integrin, alpha 10 precursor [Homo sapiens]
Length = 1167
Score = 28.9 bits (63), Expect = 0.91
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 9 RLRAGTPPA----SRLLHRRAGQAW---SPPWEGPAGD 39
RL G P A S L H GQ W PW+GP+GD
Sbjct: 31 RLFPGPPEAEFGYSVLQHVGGGQRWMLVGAPWDGPSGD 68
>gi|134142822 zinc finger protein 133 [Homo sapiens]
Length = 653
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 8 GRLRAGTP-PASRLLHRRA--GQAWSPPWEGPAGDGEMEGRLTRALPGARRRLLLGASKT 64
G ++ G P P + ++A G+ WS EGP G+G M L G ++ LGA
Sbjct: 114 GNIQPGDPGPGDQEKQQQASEGRPWSDQAEGPEGEGAM------PLFGRTKKRTLGAFSR 167
Query: 65 VPPR 68
P R
Sbjct: 168 PPQR 171
>gi|27545332 zinc finger protein 133 [Homo sapiens]
Length = 653
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 8 GRLRAGTP-PASRLLHRRA--GQAWSPPWEGPAGDGEMEGRLTRALPGARRRLLLGASKT 64
G ++ G P P + ++A G+ WS EGP G+G M L G ++ LGA
Sbjct: 114 GNIQPGDPGPGDQEKQQQASEGRPWSDQAEGPEGEGAM------PLFGRTKKRTLGAFSR 167
Query: 65 VPPR 68
P R
Sbjct: 168 PPQR 171
>gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo
sapiens]
Length = 267
Score = 28.1 bits (61), Expect = 1.5
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 6 EGGRLR-AGTPPASRLLHRRAGQAWSPPWEGPAGDGEMEGRLTRALPGARRRL 57
EG + R +G P + LL AG W P GPA G + PGA RL
Sbjct: 68 EGSQTRPSGAPQFTTLLALAAGSPWRPWRPGPALAGALR------FPGAHGRL 114
>gi|56090146 jumonji domain containing 8 [Homo sapiens]
Length = 285
Score = 28.1 bits (61), Expect = 1.5
Identities = 19/35 (54%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 6 EGGRLRAGTPPASRLLHRRAGQAWSPPWEGPAGDG 40
EGGRL A PASRLL A A + P G GDG
Sbjct: 17 EGGRLMA---PASRLLALWALAAVALPGSGAEGDG 48
>gi|122937398 dynein, cytoplasmic 2, heavy chain 1 [Homo sapiens]
Length = 4314
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 17 ASRLLHRRAGQAWSPPWEGPAGDGE-MEGRLTRAL 50
AS LL+++ AW WEGP + + G + RAL
Sbjct: 4122 ASALLNQKCPLAWQSKWEGPEDPLQYLRGLVARAL 4156
>gi|239751163 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 27 QAWSPPWEGPAGDGEMEG---RLTRALPGARRRLLLGASKTVPPR 68
Q + PWE P D ++ RLT R+LL+ + +PPR
Sbjct: 13 QPFCAPWELPLCDSPLDPPPQRLTHLPAALHRKLLIDSHFLIPPR 57
>gi|239745648 PREDICTED: similar to predicted protein [Homo
sapiens]
Length = 193
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 27 QAWSPPWEGPAGDGEMEG---RLTRALPGARRRLLLGASKTVPPR 68
Q + PWE P D ++ RLT R+LL+ + +PPR
Sbjct: 13 QPFCAPWELPLCDSPLDPPPQRLTHLPAALHRKLLIDSHFLIPPR 57
>gi|24497501 forkhead box A1 [Homo sapiens]
Length = 472
Score = 27.3 bits (59), Expect = 2.6
Identities = 16/52 (30%), Positives = 19/52 (36%)
Query: 16 PASRLLHRRAGQAWSPPWEGPAGDGEMEGRLTRALPGARRRLLLGASKTVPP 67
P R +H + GQ P GPA + G L AS T PP
Sbjct: 308 PLHRGVHGKTGQLEGAPAPGPAASPQTLDHSGATATGGASELKTPASSTAPP 359
>gi|239752933 PREDICTED: hypothetical protein [Homo sapiens]
Length = 203
Score = 26.9 bits (58), Expect = 3.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 6 EGGRLRAGTPPASRLLHRRAGQAWSPPWEGPAG 38
+G R+ A A+ L H R+ Q PP E P G
Sbjct: 20 QGKRMSAAPTEATALSHSRSPQLPQPPQEQPGG 52
>gi|7019349 gremlin-1 precursor [Homo sapiens]
Length = 184
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 1 MLGAVEGGRL--RAGTPPASRLLHRRAGQAWSPPWEGPAGDGEMEGRLTRALPG 52
+L A EG + + PP + H + Q SP G G +GR T A+PG
Sbjct: 18 LLPAAEGKKKGSQGAIPPPDKAQHNDSEQTQSPQQPGSRNRGRGQGRGT-AMPG 70
>gi|239755215 PREDICTED: similar to hCG2022304 [Homo sapiens]
Length = 117
Score = 26.6 bits (57), Expect = 4.5
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 9 RLRAGTPPASRLLHRRAGQAWSPPWEGPAGDGEMEGRLTRALPGARRRLLLGASKTVPPR 68
RL +GT A L G W+P W G + G+ RA P RR G +T+P
Sbjct: 49 RLGSGTRGAGMEL----GCPWAPSWAGAHPGRVVTGKKPRASP---RRGGRGKDRTLPKS 101
Query: 69 NER 71
R
Sbjct: 102 RTR 104
>gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo
sapiens]
Length = 333
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 23 RRAGQAWSPPWEGPAGDGEMEGRLTRALPGARR 55
RR + W EGP G E+ G R+ G RR
Sbjct: 234 RRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRR 266
>gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo
sapiens]
Length = 296
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 23 RRAGQAWSPPWEGPAGDGEMEGRLTRALPGARR 55
RR + W EGP G E+ G R+ G RR
Sbjct: 197 RRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRR 229
>gi|239743970 PREDICTED: hypothetical protein XP_002344248 [Homo
sapiens]
Length = 117
Score = 26.6 bits (57), Expect = 4.5
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 9 RLRAGTPPASRLLHRRAGQAWSPPWEGPAGDGEMEGRLTRALPGARRRLLLGASKTVPPR 68
RL +GT A L G W+P W G + G+ RA P RR G +T+P
Sbjct: 49 RLGSGTRGAGMEL----GCPWAPSWAGAHPGRVVTGKKPRASP---RRGGRGKDRTLPKS 101
Query: 69 NER 71
R
Sbjct: 102 RTR 104
>gi|170650661 ectonucleotide pyrophosphatase/phosphodiesterase 1
[Homo sapiens]
Length = 925
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 24 RAGQAWSPPWEGPAGDGEMEGR 45
R G+ P EGPAG+G GR
Sbjct: 12 RGGEGGRAPREGPAGNGRDRGR 33
>gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo sapiens]
Length = 210
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 6 EGGRLRAGTPPASRLLHRRAGQAWSPPWEGPAGDG 40
EG + R P ++ +R G PP EG GDG
Sbjct: 161 EGQKARDLRTPKHKVSEQRPGTPGPPPPEGAQGDG 195
>gi|169204510 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 24 RAGQAWSPPWEGPAGDGEMEGRLTRALPGARRRLLLGASK 63
RA + W PP P G + L R+L RR L LG +
Sbjct: 124 RAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQR 163
>gi|239754651 PREDICTED: hypothetical protein XP_002346061 [Homo
sapiens]
Length = 368
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 26 GQAWSPPWEGPAGDGEMEGRLTRALPGAR 54
G +PP GP G G + L +PGAR
Sbjct: 57 GMGRAPPGLGPVGVGPLVPDLEEGVPGAR 85
>gi|169205117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 24 RAGQAWSPPWEGPAGDGEMEGRLTRALPGARRRLLLGASK 63
RA + W PP P G + L R+L RR L LG +
Sbjct: 124 RAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQR 163
>gi|239749205 PREDICTED: hypothetical protein XP_002346953 [Homo
sapiens]
Length = 261
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 26 GQAWSPPWEGPAGDGEMEGRLTRALPGAR 54
G +PP GP G G + L +PGAR
Sbjct: 57 GMGRAPPGLGPVGVGPLVPDLEEGVPGAR 85
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,683,695
Number of Sequences: 37866
Number of extensions: 167991
Number of successful extensions: 600
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 575
Number of HSP's gapped (non-prelim): 40
length of query: 72
length of database: 18,247,518
effective HSP length: 45
effective length of query: 27
effective length of database: 16,543,548
effective search space: 446675796
effective search space used: 446675796
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.