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Search of human proteins with 239743770
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743770 PREDICTED: hypothetical protein XP_002342956 [Homo
sapiens]
(149 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169217799 PREDICTED: hypothetical protein [Homo sapiens] 310 2e-85
gi|239752508 PREDICTED: hypothetical protein XP_002347011 [Homo ... 310 2e-85
gi|239743770 PREDICTED: hypothetical protein XP_002342956 [Homo ... 310 2e-85
gi|90669228 deleted in lung and esophageal cancer 1 isoform DLEC... 37 0.006
gi|90669194 deleted in lung and esophageal cancer 1 isoform DLEC... 37 0.006
gi|83367077 mucin 16 [Homo sapiens] 33 0.12
gi|4506401 v-raf-1 murine leukemia viral oncogene homolog 1 [Hom... 32 0.26
gi|54112407 protein kinase CHK2 isoform c [Homo sapiens] 31 0.34
gi|22209009 protein kinase CHK2 isoform b [Homo sapiens] 31 0.34
gi|6005850 protein kinase CHK2 isoform a [Homo sapiens] 31 0.34
gi|4505151 Meis homeobox 1 [Homo sapiens] 30 0.58
gi|197304733 cytochrome b-561 domain containing 1 isoform 5 [Hom... 30 0.58
gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Hom... 30 0.58
gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Hom... 30 0.58
gi|154689847 hypothetical protein LOC9851 [Homo sapiens] 29 1.7
gi|148746218 TAO kinase 3 [Homo sapiens] 28 2.2
gi|195947382 Rab interacting lysosomal protein-like 1 [Homo sapi... 28 2.2
gi|226246533 TOX high mobility group box family member 3 isoform... 28 2.9
gi|226054295 TOX high mobility group box family member 3 isoform... 28 2.9
gi|4504919 keratin 8 [Homo sapiens] 28 3.7
gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sap... 28 3.7
gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sap... 28 3.7
gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sap... 28 3.7
gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapi... 28 3.7
gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithora... 27 4.9
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 27 4.9
gi|55770834 centromere protein F [Homo sapiens] 27 4.9
gi|15812226 transcriptional regulating factor 1 [Homo sapiens] 27 4.9
gi|13129124 caspase recruitment domain protein 14 isoform 1 [Hom... 27 4.9
gi|38788416 laminin, alpha 1 precursor [Homo sapiens] 27 6.4
>gi|169217799 PREDICTED: hypothetical protein [Homo sapiens]
Length = 149
Score = 310 bits (795), Expect = 2e-85
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MHRTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKS 60
MHRTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKS
Sbjct: 1 MHRTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKS 60
Query: 61 NASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQ 120
NASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQ
Sbjct: 61 NASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQ 120
Query: 121 VMKTLLIKQVAVKKPAKAHQNQGGHESDL 149
VMKTLLIKQVAVKKPAKAHQNQGGHESDL
Sbjct: 121 VMKTLLIKQVAVKKPAKAHQNQGGHESDL 149
>gi|239752508 PREDICTED: hypothetical protein XP_002347011 [Homo
sapiens]
Length = 149
Score = 310 bits (795), Expect = 2e-85
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MHRTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKS 60
MHRTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKS
Sbjct: 1 MHRTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKS 60
Query: 61 NASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQ 120
NASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQ
Sbjct: 61 NASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQ 120
Query: 121 VMKTLLIKQVAVKKPAKAHQNQGGHESDL 149
VMKTLLIKQVAVKKPAKAHQNQGGHESDL
Sbjct: 121 VMKTLLIKQVAVKKPAKAHQNQGGHESDL 149
>gi|239743770 PREDICTED: hypothetical protein XP_002342956 [Homo
sapiens]
Length = 149
Score = 310 bits (795), Expect = 2e-85
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MHRTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKS 60
MHRTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKS
Sbjct: 1 MHRTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKS 60
Query: 61 NASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQ 120
NASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQ
Sbjct: 61 NASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQ 120
Query: 121 VMKTLLIKQVAVKKPAKAHQNQGGHESDL 149
VMKTLLIKQVAVKKPAKAHQNQGGHESDL
Sbjct: 121 VMKTLLIKQVAVKKPAKAHQNQGGHESDL 149
>gi|90669228 deleted in lung and esophageal cancer 1 isoform
DLEC1-S3 [Homo sapiens]
Length = 1778
Score = 37.0 bits (84), Expect = 0.006
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 3 RTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKSNA 62
R+S+ S A+R+ C QG+ W+ P +S P QP++ + + + +
Sbjct: 4 RSSKTRRSLASRTNEC----QGTMWAPTSPPAGSSSPSQPTWKSSLYSSLAYSEAFHYSF 59
Query: 63 SQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRH 106
+ + ++ + + EP+ L RLRP+ L +Q+ H
Sbjct: 60 AARPRRLTQLALAQRPEPQLL---------RLRPSSLRTQDISH 94
>gi|90669194 deleted in lung and esophageal cancer 1 isoform
DLEC1-N1 [Homo sapiens]
Length = 1755
Score = 37.0 bits (84), Expect = 0.006
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 3 RTSRWAGSAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKSNA 62
R+S+ S A+R+ C QG+ W+ P +S P QP++ + + + +
Sbjct: 4 RSSKTRRSLASRTNEC----QGTMWAPTSPPAGSSSPSQPTWKSSLYSSLAYSEAFHYSF 59
Query: 63 SQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRH 106
+ + ++ + + EP+ L RLRP+ L +Q+ H
Sbjct: 60 AARPRRLTQLALAQRPEPQLL---------RLRPSSLRTQDISH 94
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 32.7 bits (73), Expect = 0.12
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 25 STW----SSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKSNASQAQWLMPEIPMPETLEP 80
STW SS P+ ++S +RVT ++ T +++ +W MP +P +L P
Sbjct: 1148 STWLGILSSSPSSPTPKVTMSSTFSTQRVTTSMIMDTVETS----RWNMPNLPSTTSLTP 1203
Query: 81 EQLHLEQELGKMRLRP 96
+ +GK L P
Sbjct: 1204 SNIPTSGAIGKSTLVP 1219
>gi|4506401 v-raf-1 murine leukemia viral oncogene homolog 1 [Homo
sapiens]
Length = 648
Score = 31.6 bits (70), Expect = 0.26
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 15 SQWCLAIQQGSTWSSQEPWPSTSWP------EQPSYSNKRVTKMGMLSTSKSNASQAQWL 68
S+ L+ +Q ST + ST+ P E S+ LS+S +N S W
Sbjct: 247 SEGSLSQRQRSTSTPNVHMVSTTLPVDSRMIEDAIRSHSESASPSALSSSPNNLSPTGWS 306
Query: 69 MPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEF 104
P+ P+P E + QE K ++RP G +
Sbjct: 307 QPKTPVPAQRERAPVSGTQE--KNKIRPRGQRDSSY 340
>gi|54112407 protein kinase CHK2 isoform c [Homo sapiens]
Length = 586
Score = 31.2 bits (69), Expect = 0.34
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 10 SAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKSNASQAQWLM 69
SA ++ + QGS+ SQ S+S P+ S + G LS+ ++ ++Q + +
Sbjct: 16 SACSQPHGSVTQSQGSSSQSQGI-SSSSTSTMPNSSQSSHSSSGTLSSLETVSTQELYSI 74
Query: 70 PEIPMPETLEPEQ 82
PE PE EPE+
Sbjct: 75 PEDQEPEDQEPEE 87
>gi|22209009 protein kinase CHK2 isoform b [Homo sapiens]
Length = 514
Score = 31.2 bits (69), Expect = 0.34
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 10 SAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKSNASQAQWLM 69
SA ++ + QGS+ SQ S+S P+ S + G LS+ ++ ++Q + +
Sbjct: 16 SACSQPHGSVTQSQGSSSQSQGI-SSSSTSTMPNSSQSSHSSSGTLSSLETVSTQELYSI 74
Query: 70 PEIPMPETLEPEQ 82
PE PE EPE+
Sbjct: 75 PEDQEPEDQEPEE 87
>gi|6005850 protein kinase CHK2 isoform a [Homo sapiens]
Length = 543
Score = 31.2 bits (69), Expect = 0.34
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 10 SAANRSQWCLAIQQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKSNASQAQWLM 69
SA ++ + QGS+ SQ S+S P+ S + G LS+ ++ ++Q + +
Sbjct: 16 SACSQPHGSVTQSQGSSSQSQGI-SSSSTSTMPNSSQSSHSSSGTLSSLETVSTQELYSI 74
Query: 70 PEIPMPETLEPEQ 82
PE PE EPE+
Sbjct: 75 PEDQEPEDQEPEE 87
>gi|4505151 Meis homeobox 1 [Homo sapiens]
Length = 390
Score = 30.4 bits (67), Expect = 0.58
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 22 QQGSTWSSQEPWPSTSWPEQPSYSNKRVTKMGMLSTSKSNASQAQWLMPEIPMPETLEPE 81
+QG + PST + P KR K G+ +N +A WL + P E +
Sbjct: 246 EQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRA-WLFQHLTHPYPSEEQ 304
Query: 82 QLHLEQELG 90
+ L Q+ G
Sbjct: 305 KKQLAQDTG 313
>gi|197304733 cytochrome b-561 domain containing 1 isoform 5 [Homo
sapiens]
Length = 128
Score = 30.4 bits (67), Expect = 0.58
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 50 TKMGMLSTSKSNASQAQWLMPEIP 73
TK G L +S +A+W+MPEIP
Sbjct: 49 TKTGPLMEDRSEGGRARWVMPEIP 72
>gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Homo
sapiens]
Length = 133
Score = 30.4 bits (67), Expect = 0.58
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 50 TKMGMLSTSKSNASQAQWLMPEIP 73
TK G L +S +A+W+MPEIP
Sbjct: 49 TKTGPLMEDRSEGGRARWVMPEIP 72
>gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Homo
sapiens]
Length = 251
Score = 30.4 bits (67), Expect = 0.58
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 50 TKMGMLSTSKSNASQAQWLMPEIP 73
TK G L +S +A+W+MPEIP
Sbjct: 49 TKTGPLMEDRSEGGRARWVMPEIP 72
>gi|154689847 hypothetical protein LOC9851 [Homo sapiens]
Length = 967
Score = 28.9 bits (63), Expect = 1.7
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 31 EPWPSTSWPEQPSYSNKRVTKMGMLSTSKSNASQAQWLMPEIPMPETLEPEQLHLEQEL 89
E WPSTS P + +T S S A+ L+ + P+T PE L+ EL
Sbjct: 403 ERWPSTS----PKGERRPLTAKDTFPQETSRPSVAKQLLADKYQPDTELPETQRLQSEL 457
>gi|148746218 TAO kinase 3 [Homo sapiens]
Length = 898
Score = 28.5 bits (62), Expect = 2.2
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 79 EPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGR--HKIQVMKTLLIK 128
E EQ ++ +EL K R + H+ RH +S E+ R H +Q ++ LI+
Sbjct: 625 EVEQQNIREELNKKRTQKEMEHAMLIRHDESTRELEYRQLHTLQKLRMDLIR 676
>gi|195947382 Rab interacting lysosomal protein-like 1 [Homo
sapiens]
Length = 403
Score = 28.5 bits (62), Expect = 2.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 76 ETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIG 114
+T E E L ELGK+R R G HSQ + +G
Sbjct: 234 QTKEQEMGSLRAELGKLRERLQGEHSQNGEEEPETEPVG 272
>gi|226246533 TOX high mobility group box family member 3 isoform 2
[Homo sapiens]
Length = 571
Score = 28.1 bits (61), Expect = 2.9
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 74 MPETLEPEQLHLEQELGKMRLR---PAGLHSQEFRHSKSQDEIGGRHKIQVMKTLLIKQV 130
M + L+ +Q HL+Q++ + +L+ L Q+ +H + Q + R V +
Sbjct: 481 MQQHLQQQQQHLQQQINQQQLQQQLQQRLQLQQLQHMQHQSQPSPRQHSPVASQITSPIP 540
Query: 131 AVKKPAKAHQNQGGHESDL 149
A+ P A Q H+S +
Sbjct: 541 AIGSPQPASQQ---HQSQI 556
>gi|226054295 TOX high mobility group box family member 3 isoform 1
[Homo sapiens]
Length = 576
Score = 28.1 bits (61), Expect = 2.9
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 74 MPETLEPEQLHLEQELGKMRLR---PAGLHSQEFRHSKSQDEIGGRHKIQVMKTLLIKQV 130
M + L+ +Q HL+Q++ + +L+ L Q+ +H + Q + R V +
Sbjct: 486 MQQHLQQQQQHLQQQINQQQLQQQLQQRLQLQQLQHMQHQSQPSPRQHSPVASQITSPIP 545
Query: 131 AVKKPAKAHQNQGGHESDL 149
A+ P A Q H+S +
Sbjct: 546 AIGSPQPASQQ---HQSQI 561
>gi|4504919 keratin 8 [Homo sapiens]
Length = 483
Score = 27.7 bits (60), Expect = 3.7
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
Query: 76 ETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHKIQVMKTLLIKQV 130
ETL E+L LE ELG M+ GL ++F+ +K +DEI R +++ L+ K V
Sbjct: 152 ETLGQEKLKLEAELGNMQ----GL-VEDFK-NKYEDEINKRTEMENEFVLIKKDV 200
>gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo
sapiens]
Length = 1293
Score = 27.7 bits (60), Expect = 3.7
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 59 KSNASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHK 118
K A+W E LE +L +E+E ++R H +E R K E+ + +
Sbjct: 836 KQEEEAAKWAREEEEAQRRLEENRLRMEEEAARLR------HEEEERKRK---ELEVQRQ 886
Query: 119 IQVMKTLLIKQVAVKKPAKAHQNQ 142
++M+ +Q A+++ + Q Q
Sbjct: 887 KELMRQRQQQQEALRRLQQQQQQQ 910
>gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo
sapiens]
Length = 1320
Score = 27.7 bits (60), Expect = 3.7
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 59 KSNASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHK 118
K A+W E LE +L +E+E ++R H +E R K E+ + +
Sbjct: 863 KQEEEAAKWAREEEEAQRRLEENRLRMEEEAARLR------HEEEERKRK---ELEVQRQ 913
Query: 119 IQVMKTLLIKQVAVKKPAKAHQNQ 142
++M+ +Q A+++ + Q Q
Sbjct: 914 KELMRQRQQQQEALRRLQQQQQQQ 937
>gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 27.7 bits (60), Expect = 3.7
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 59 KSNASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHK 118
K A+W E LE +L +E+E ++R H +E R K E+ + +
Sbjct: 842 KQEEEAAKWAREEEEAQRRLEENRLRMEEEAARLR------HEEEERKRK---ELEVQRQ 892
Query: 119 IQVMKTLLIKQVAVKKPAKAHQNQ 142
++M+ +Q A+++ + Q Q
Sbjct: 893 KELMRQRQQQQEALRRLQQQQQQQ 916
>gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 27.7 bits (60), Expect = 3.7
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 59 KSNASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHK 118
K A+W E LE +L +E+E ++R H +E R K E+ + +
Sbjct: 842 KQEEEAAKWAREEEEAQRRLEENRLRMEEEAARLR------HEEEERKRK---ELEVQRQ 892
Query: 119 IQVMKTLLIKQVAVKKPAKAHQNQ 142
++M+ +Q A+++ + Q Q
Sbjct: 893 KELMRQRQQQQEALRRLQQQQQQQ 916
>gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 1 [Homo
sapiens]
Length = 1834
Score = 27.3 bits (59), Expect = 4.9
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 64 QAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDE 112
+A+ MP I + + L+ E+ +Q+L +MR R A +++ + Q+E
Sbjct: 1601 RARTAMPAISVLDLLQDEERRRQQQLEEMRKREAEDRARQEEERRRQEE 1649
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 27.3 bits (59), Expect = 4.9
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 39 PEQPSYSNKRVTKMGMLSTSKSNASQAQWLMPEIPMPETLEPEQLHLEQE 88
P+QPS + R + S A P +P P +P Q+ LE E
Sbjct: 867 PQQPSRPSNRAAALPPKPARPPAVSPALTQTPLLPQPPMAQPPQVLLEDE 916
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 27.3 bits (59), Expect = 4.9
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 76 ETLEPEQLHLEQELGKMRLRPAGLHSQEFRHSKSQDEIGGRHK 118
E + EQL LE E+ +++L+ L S+ ++D I GR++
Sbjct: 1627 EKKQTEQLSLELEVARLQLQGLDLSSRSLLGIDTEDAIQGRNE 1669
>gi|15812226 transcriptional regulating factor 1 [Homo sapiens]
Length = 1200
Score = 27.3 bits (59), Expect = 4.9
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 39 PEQPSYSNKRVTKMGMLSTSKSNASQAQWLMPEIPMPETLEPEQLHLEQELGKMRL---- 94
P+Q + ++ M + T +Q P+ P P+ +P+QL L+Q G M++
Sbjct: 272 PQQQQQAGQQRISMQEIQTQPQQIRPSQ---PQ-PPPQQQQPQQLQLQQRQGSMQIPQYY 327
Query: 95 --RPAGLHSQE 103
+P H QE
Sbjct: 328 QPQPMMQHLQE 338
>gi|13129124 caspase recruitment domain protein 14 isoform 1 [Homo
sapiens]
Length = 1004
Score = 27.3 bits (59), Expect = 4.9
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 53 GMLSTSKSN-------ASQAQWLMPEIPMPETLEPEQLHLEQELGKMRLRPAGLHSQEFR 105
G++ TSK S + L E E L L++ LG R GLH E
Sbjct: 117 GLMETSKLTECLAGAIGSLQEELNQEKGQKEVLLRRCQQLQEHLGLAETRAEGLHQLEAD 176
Query: 106 HSKSQDEIGGR-HKIQVMK 123
HS+ + E+ H++ +K
Sbjct: 177 HSRMKREVSAHFHEVLRLK 195
>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
Length = 3075
Score = 26.9 bits (58), Expect = 6.4
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 110 QDEIGGRHKIQVMKTLLIKQVAVK 133
QD +GGRH++ + T +++++A K
Sbjct: 543 QDALGGRHQVSINNTAVMQRLAPK 566
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.123 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,308,073
Number of Sequences: 37866
Number of extensions: 279859
Number of successful extensions: 760
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 738
Number of HSP's gapped (non-prelim): 40
length of query: 149
length of database: 18,247,518
effective HSP length: 93
effective length of query: 56
effective length of database: 14,725,980
effective search space: 824654880
effective search space used: 824654880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.