Search of human proteins with 239743739

Search of human proteins with 239743739

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743739 PREDICTED: hypothetical protein XP_002342949 [Homo
sapiens]
         (94 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239743739 PREDICTED: hypothetical protein XP_002342949 [Homo ...   184   1e-47
gi|239755061 PREDICTED: hypothetical protein XP_002346204 [Homo ...    56   7e-09
gi|239748504 PREDICTED: hypothetical protein XP_002346687 [Homo ...    56   7e-09
gi|239743823 PREDICTED: hypothetical protein XP_002344302 [Homo ...    56   7e-09
gi|239746552 PREDICTED: hypothetical protein XP_002343776 [Homo ...    44   4e-05
gi|169211171 PREDICTED: hypothetical protein [Homo sapiens]            40   5e-04
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ...    37   0.003
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ...    37   0.003
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ...    37   0.003
gi|126090909 engrailed homeobox 1 [Homo sapiens]                       35   0.013
gi|4506783 Sin3A-associated protein, 30kDa [Homo sapiens]              35   0.017
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]      34   0.029
gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a ...    33   0.038
gi|223646113 Sp9 transcription factor homolog [Homo sapiens]           33   0.049
gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo ...    33   0.064
gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo ...    33   0.064
gi|117190342 PHD finger protein 2 [Homo sapiens]                       33   0.064
gi|7662236 TSC22 domain family, member 2 [Homo sapiens]                33   0.064
gi|74027251 tripartite motif-containing 33 protein isoform beta ...    32   0.084
gi|74027249 tripartite motif-containing 33 protein isoform alpha...    32   0.084
gi|46370064 endothelin 3 isoform 1 preproprotein [Homo sapiens]        32   0.084
gi|46370062 endothelin 3 isoform 3 preproprotein [Homo sapiens]        32   0.084
gi|46370060 endothelin 3 isoform 2 preproprotein [Homo sapiens]        32   0.084
gi|4557545 endothelin 3 isoform 1 preproprotein [Homo sapiens]         32   0.084
gi|5902724 neuro-oncological ventral antigen 2 [Homo sapiens]          32   0.084
gi|12707580 paired-like homeobox 2b [Homo sapiens]                     32   0.11 
gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo s...    32   0.11 
gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo...    32   0.11 
gi|4502739 cyclin-dependent kinase 5, regulatory subunit 2 [Homo...    32   0.11 
gi|46488919 astrotactin 2 isoform c [Homo sapiens]                     32   0.14 

>gi|239743739 PREDICTED: hypothetical protein XP_002342949 [Homo
          sapiens]
          Length = 94

 Score =  184 bits (467), Expect = 1e-47
 Identities = 94/94 (100%), Positives = 94/94 (100%)

Query: 1  MVAVTVTKAAARASRMRTGEADSPAPPPLTRQSQAADLLKNGGDAAAAGTGAAVLEVAAA 60
          MVAVTVTKAAARASRMRTGEADSPAPPPLTRQSQAADLLKNGGDAAAAGTGAAVLEVAAA
Sbjct: 1  MVAVTVTKAAARASRMRTGEADSPAPPPLTRQSQAADLLKNGGDAAAAGTGAAVLEVAAA 60

Query: 61 AAAQPGAAGGKRTTRGACGRPRVGPIGVLSSGPP 94
          AAAQPGAAGGKRTTRGACGRPRVGPIGVLSSGPP
Sbjct: 61 AAAQPGAAGGKRTTRGACGRPRVGPIGVLSSGPP 94


>gi|239755061 PREDICTED: hypothetical protein XP_002346204 [Homo
           sapiens]
          Length = 122

 Score = 55.8 bits (133), Expect = 7e-09
 Identities = 43/103 (41%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 1   MVAVTVTKAAARASRMRTGEADSPAP-PPLTRQSQAADLLKNGGDAAAAGTGAAVLEVAA 59
           MVAVTVTKAAA ASRMRTGEADSPAP PP + +S      K          G        
Sbjct: 1   MVAVTVTKAAAPASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGG 60

Query: 60  AAAAQPGAA------GGKRTTRGACGRP---RVGPIGVLSSGP 93
              A PG         G R T+G   R    R   IG+L   P
Sbjct: 61  GCGAAPGGGWEEDYQRGLRETQGRTHRSPVVRTSVIGLLLGFP 103


>gi|239748504 PREDICTED: hypothetical protein XP_002346687 [Homo
           sapiens]
          Length = 122

 Score = 55.8 bits (133), Expect = 7e-09
 Identities = 43/103 (41%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 1   MVAVTVTKAAARASRMRTGEADSPAP-PPLTRQSQAADLLKNGGDAAAAGTGAAVLEVAA 59
           MVAVTVTKAAA ASRMRTGEADSPAP PP + +S      K          G        
Sbjct: 1   MVAVTVTKAAAPASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGG 60

Query: 60  AAAAQPGAA------GGKRTTRGACGRP---RVGPIGVLSSGP 93
              A PG         G R T+G   R    R   IG+L   P
Sbjct: 61  GCGAAPGGGWEEDYQRGLRETQGRTHRSPVVRTSVIGLLLGFP 103


>gi|239743823 PREDICTED: hypothetical protein XP_002344302 [Homo
           sapiens]
          Length = 122

 Score = 55.8 bits (133), Expect = 7e-09
 Identities = 43/103 (41%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 1   MVAVTVTKAAARASRMRTGEADSPAP-PPLTRQSQAADLLKNGGDAAAAGTGAAVLEVAA 59
           MVAVTVTKAAA ASRMRTGEADSPAP PP + +S      K          G        
Sbjct: 1   MVAVTVTKAAAPASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGG 60

Query: 60  AAAAQPGAA------GGKRTTRGACGRP---RVGPIGVLSSGP 93
              A PG         G R T+G   R    R   IG+L   P
Sbjct: 61  GCGAAPGGGWEEDYQRGLRETQGRTHRSPVVRTSVIGLLLGFP 103


>gi|239746552 PREDICTED: hypothetical protein XP_002343776 [Homo
          sapiens]
          Length = 106

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 35/90 (38%), Positives = 38/90 (42%), Gaps = 15/90 (16%)

Query: 16 MRTGEADSPAPPPLTRQSQAADLLK---------NGGDAAAAGTGAAVLEVAAAAAAQPG 66
          MR GEADSPAPPPLTRQS      K          GG A A G G      A     +  
Sbjct: 1  MRAGEADSPAPPPLTRQSGCGPFKKWRRRRGCGDWGGGAGACGGGCG---AAPGGGWEED 57

Query: 67 AAGGKRTTRGACGRP---RVGPIGVLSSGP 93
             G R T+G   R    R   IG+L   P
Sbjct: 58 YQRGLRETQGRTHRSPVVRTSLIGLLLGFP 87


>gi|169211171 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 173

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 10/89 (11%)

Query: 2   VAVTVTKAAARASRMRTGEADSPAPPPLTRQSQAADLLKNGGDAAAAGTGAAVLEVAAAA 61
           V +TVT A ARA RMR G A+S + P     SQAA  L N G A         L +    
Sbjct: 95  VGITVTGACARALRMRIGGAESHSAP----GSQAATPLNNSGYAEEGR-----LALQPWR 145

Query: 62  AAQPGAAGGKRTTRGACGRPRVGPIGVLS 90
               G++ G+R  RG   RP+  P GV S
Sbjct: 146 WLDQGSSTGQR-GRGGHRRPKAKPPGVRS 173


>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
           [Homo sapiens]
          Length = 2191

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 23  SPAPPPLTRQSQAADL-LKNGGDAAAAGTGAAVLEVAAAAAAQPGAAGGKRTTRGACGRP 81
           +P PPP   QSQAA      GG  AAAG G      A  AAA P  A  ++ +  A    
Sbjct: 387 APPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPG 446

Query: 82  RVGPIGVLSSGPP 94
             GP    S G P
Sbjct: 447 TPGPTMGRSQGSP 459



 Score = 33.1 bits (74), Expect = 0.049
 Identities = 26/51 (50%), Positives = 26/51 (50%), Gaps = 7/51 (13%)

Query: 42  GGDAAAAGTGA-AVLEVAAAAAAQPGAAGGKRTTRGACGRPRVGPIGVLSS 91
           GG A A G GA AV   AAAAAA  G  GG     G  G    G  GVLSS
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGG-----GGYGGSSAG-YGVLSS 312



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 19  GEADSPAPPPLTRQSQAADLLKNGGDAAAA---GTGAAVLEVAAAAAAQPGAAGG 70
           G+AD P PP L++     D     G+ A       G   L       A PG  GG
Sbjct: 111 GQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQPPVAVPGGGGG 165



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 15/41 (36%), Positives = 15/41 (36%)

Query: 42  GGDAAAAGTGAAVLEVAAAAAAQPGAAGGKRTTRGACGRPR 82
           GG  A A   AA    AAA     G  GG     G    PR
Sbjct: 274 GGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPR 314


>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
           [Homo sapiens]
          Length = 2231

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 23  SPAPPPLTRQSQAADL-LKNGGDAAAAGTGAAVLEVAAAAAAQPGAAGGKRTTRGACGRP 81
           +P PPP   QSQAA      GG  AAAG G      A  AAA P  A  ++ +  A    
Sbjct: 387 APPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPG 446

Query: 82  RVGPIGVLSSGPP 94
             GP    S G P
Sbjct: 447 TPGPTMGRSQGSP 459



 Score = 33.1 bits (74), Expect = 0.049
 Identities = 26/51 (50%), Positives = 26/51 (50%), Gaps = 7/51 (13%)

Query: 42  GGDAAAAGTGA-AVLEVAAAAAAQPGAAGGKRTTRGACGRPRVGPIGVLSS 91
           GG A A G GA AV   AAAAAA  G  GG     G  G    G  GVLSS
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGG-----GGYGGSSAG-YGVLSS 312



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 19  GEADSPAPPPLTRQSQAADLLKNGGDAAAA---GTGAAVLEVAAAAAAQPGAAGG 70
           G+AD P PP L++     D     G+ A       G   L       A PG  GG
Sbjct: 111 GQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQPPVAVPGGGGG 165



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 15/41 (36%), Positives = 15/41 (36%)

Query: 42  GGDAAAAGTGAAVLEVAAAAAAQPGAAGGKRTTRGACGRPR 82
           GG  A A   AA    AAA     G  GG     G    PR
Sbjct: 274 GGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPR 314


>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
           [Homo sapiens]
          Length = 2178

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 23  SPAPPPLTRQSQAADL-LKNGGDAAAAGTGAAVLEVAAAAAAQPGAAGGKRTTRGACGRP 81
           +P PPP   QSQAA      GG  AAAG G      A  AAA P  A  ++ +  A    
Sbjct: 387 APPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPG 446

Query: 82  RVGPIGVLSSGPP 94
             GP    S G P
Sbjct: 447 TPGPTMGRSQGSP 459



 Score = 33.1 bits (74), Expect = 0.049
 Identities = 26/51 (50%), Positives = 26/51 (50%), Gaps = 7/51 (13%)

Query: 42  GGDAAAAGTGA-AVLEVAAAAAAQPGAAGGKRTTRGACGRPRVGPIGVLSS 91
           GG A A G GA AV   AAAAAA  G  GG     G  G    G  GVLSS
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGG-----GGYGGSSAG-YGVLSS 312



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 19  GEADSPAPPPLTRQSQAADLLKNGGDAAAA---GTGAAVLEVAAAAAAQPGAAGG 70
           G+AD P PP L++     D     G+ A       G   L       A PG  GG
Sbjct: 111 GQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQPPVAVPGGGGG 165



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 15/41 (36%), Positives = 15/41 (36%)

Query: 42  GGDAAAAGTGAAVLEVAAAAAAQPGAAGGKRTTRGACGRPR 82
           GG  A A   AA    AAA     G  GG     G    PR
Sbjct: 274 GGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPR 314


>gi|126090909 engrailed homeobox 1 [Homo sapiens]
          Length = 392

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 25/75 (33%), Positives = 33/75 (44%)

Query: 7   TKAAARASRMRTGEADSPAPPPLTRQSQAADLLKNGGDAAAAGTGAAVLEVAAAAAAQPG 66
           T+A   AS +   +A+   P      +  A   K G  AAAA   AA +  AAAAAA   
Sbjct: 161 TRAPGAASLLCAPDANCGPPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKP 220

Query: 67  AAGGKRTTRGACGRP 81
           +  G   + G  G P
Sbjct: 221 SDTGGGGSGGGAGSP 235



 Score = 28.9 bits (63), Expect = 0.93
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 56  EVAAAAAAQPGAAGGKRTTRG----ACGRPRVGPIGVLSSG 92
           ++  AAAA+ GA GG R  R     A GR  V P+G  + G
Sbjct: 125 QLLVAAAARGGAGGGGRVERDRGQTAAGRDPVHPLGTRAPG 165


>gi|4506783 Sin3A-associated protein, 30kDa [Homo sapiens]
          Length = 220

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 21/57 (36%), Positives = 23/57 (40%)

Query: 37 DLLKNGGDAAAAGTGAAVLEVAAAAAAQPGAAGGKRTTRGACGRPRVGPIGVLSSGP 93
          D +  GGDAAAA         AAA+A     AG      GA      GP G    GP
Sbjct: 7  DEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGP 63


>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
          Length = 334

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 34/98 (34%), Positives = 40/98 (40%), Gaps = 10/98 (10%)

Query: 6   VTKAAARASRMRT---GEADSPAPPPLTRQSQAADLLKN---GGDAAAAGTGAAVLEVAA 59
           V++ AA  S +R    G   SP   P      A   L +   G    A G GAA    AA
Sbjct: 169 VSETAATCSVLRLLEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALGAGAAAGSAAA 228

Query: 60  AAAAQPGAAGGKR----TTRGACGRPRVGPIGVLSSGP 93
           AAAA PG AG          GA G    GP G+ +  P
Sbjct: 229 AAAAAPGPAGAASPHPPAVGGAPGPGPAGPGGLHAGAP 266


>gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a
           [Homo sapiens]
          Length = 825

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 19  GEADSPAPPPLTRQSQAADLLKNGGDAAAAGTGAAVLEVAAAAAAQPGA------AGGKR 72
           G  +    PP T+Q Q     + G    AAG  +    + A   A PGA      AGGK+
Sbjct: 157 GHGEQQPQPPATQQQQPQQ--QRGAAKEAAGKSSGPTSLFAVTVAPPGARQGQQQAGGKK 214

Query: 73  TTRGACGRPRVG 84
              G  G  R G
Sbjct: 215 KAEGGGGGGRPG 226


>gi|223646113 Sp9 transcription factor homolog [Homo sapiens]
          Length = 484

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 20  EADSPAPPPLTRQSQAADLLKNGGDAAAAGTGAAVLEVAAAAAAQPGAAGGKRTTRG 76
           ++D+ A    T +S++ DL+ +    +AA   AA    AAAAAA   +AGGK    G
Sbjct: 425 DSDTDASNLETPRSESPDLILHDSGVSAARAAAAAAAAAAAAAAA-ASAGGKEAASG 480


>gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo
           sapiens]
          Length = 493

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 23  SPAPPPLTRQSQAADLLK-------NGGDAAAAGTGAAVLEVAAAAAAQPGAAGGKRTTR 75
           +PAPPP T Q+ AA+ L+            +AA   AA    AA AAA P  A       
Sbjct: 66  APAPPP-TPQAPAAEPLQVDLLPVLAAAQESAAAAAAAAAAAAAVAAAPPAPAAASTVDT 124

Query: 76  GACGRPRVGP 85
            A  +P   P
Sbjct: 125 AALKQPPAPP 134



 Score = 30.0 bits (66), Expect = 0.42
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 11  ARASRMRTGEADSPAPPPLTRQSQAADLLKNGGDAAAAGTGAAVLEVAAAAAAQPGAAGG 70
           A+A R+ +G    P   PL+  S    L   GG    AG G     VAA       A+G 
Sbjct: 215 AKAGRVPSGAMKMPTMVPLSLLS-VPQLSGAGGGGGEAGAGGGAAAVAAGGVVTTTASGK 273

Query: 71  KRTTRGAC 78
           +     AC
Sbjct: 274 RIRKNHAC 281



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 3   AVTVTKAAARASRMRTGEADSPAPPPLTRQSQAADLLKNGGDAAAAGTGAAVLEVAAAAA 62
           A TV  AA     ++   A  P PPP++  +  A    +    AAA   A V   +  A 
Sbjct: 119 ASTVDTAA-----LKQPPAPPPPPPPVSAPAAEAAPPASAATIAAAAATAVVAPTSTVAV 173

Query: 63  AQPGAAGGKRT 73
           A   +A  K+T
Sbjct: 174 APVASALEKKT 184


>gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo
           sapiens]
          Length = 477

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 23  SPAPPPLTRQSQAADLLK-------NGGDAAAAGTGAAVLEVAAAAAAQPGAAGGKRTTR 75
           +PAPPP T Q+ AA+ L+            +AA   AA    AA AAA P  A       
Sbjct: 66  APAPPP-TPQAPAAEPLQVDLLPVLAAAQESAAAAAAAAAAAAAVAAAPPAPAAASTVDT 124

Query: 76  GACGRPRVGP 85
            A  +P   P
Sbjct: 125 AALKQPPAPP 134



 Score = 30.0 bits (66), Expect = 0.42
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 11  ARASRMRTGEADSPAPPPLTRQSQAADLLKNGGDAAAAGTGAAVLEVAAAAAAQPGAAGG 70
           A+A R+ +G    P   PL+  S    L   GG    AG G     VAA       A+G 
Sbjct: 215 AKAGRVPSGAMKMPTMVPLSLLS-VPQLSGAGGGGGEAGAGGGAAAVAAGGVVTTTASGK 273

Query: 71  KRTTRGAC 78
           +     AC
Sbjct: 274 RIRKNHAC 281



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 3   AVTVTKAAARASRMRTGEADSPAPPPLTRQSQAADLLKNGGDAAAAGTGAAVLEVAAAAA 62
           A TV  AA     ++   A  P PPP++  +  A    +    AAA   A V   +  A 
Sbjct: 119 ASTVDTAA-----LKQPPAPPPPPPPVSAPAAEAAPPASAATIAAAAATAVVAPTSTVAV 173

Query: 63  AQPGAAGGKRT 73
           A   +A  K+T
Sbjct: 174 APVASALEKKT 184


>gi|117190342 PHD finger protein 2 [Homo sapiens]
          Length = 1096

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 19/100 (19%)

Query: 3    AVTVTKAAARASRMRTGEADSPAPPPLTRQSQAADLLKNGGDAAAAGTGA---------- 52
            A T   + + AS   + E  SP PPP +  S  AD   +   AA   TGA          
Sbjct: 989  ASTTPASTSTASSQASQEGSSPEPPPESHSSSLAD---HEYTAAGTFTGAQAGRTSQPMA 1045

Query: 53   --AVLEVAAAAAAQPG---AAGGKRTTRG-ACGRPRVGPI 86
                L     +A+ P    AA GKRT +G A  + R+G I
Sbjct: 1046 PGVFLTQRRPSASSPNNNTAAKGKRTKKGMATAKQRLGKI 1085


>gi|7662236 TSC22 domain family, member 2 [Homo sapiens]
          Length = 780

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 14/96 (14%)

Query: 8   KAAARASRMRTGEADSPAP--PPLTRQSQ---AADLLKNGGDAAAA----GTGAAVLEVA 58
           ++++  +    G+A++P    P L    Q   AA    NGG   +A    G  A+ L  A
Sbjct: 65  RSSSEETLNNVGDAETPGTVSPNLLLDGQLAAAAAAPANGGGVVSARSVSGALASTLAAA 124

Query: 59  AAAAAQPGAAGGKRTTRGACGRPRVGPIGVLSSGPP 94
           A +A  PGA GG +    +      GP+    S PP
Sbjct: 125 ATSAPAPGAPGGPQLAGSS-----AGPVTAAPSQPP 155


>gi|74027251 tripartite motif-containing 33 protein isoform beta
           [Homo sapiens]
          Length = 1110

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 19  GEADSPAPPPLTR---QSQAADLLKNGGDAAAAGTG----AAVLEVAAAAAAQPGAAGGK 71
           G A   A PPLT    + +  +  + G +  AAG      AA    +A AA+ P A+ G 
Sbjct: 28  GPAAQEAEPPLTAVLVEEEEEEGGRAGAEGGAAGPDDGGVAAASSGSAQAASSPAASVGT 87

Query: 72  RTTRGACGRPRVGPIGVLSSGP 93
               GA   P   P    + GP
Sbjct: 88  GVAGGAVSTPAPAPASAPAPGP 109



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 16/69 (23%)

Query: 40 KNGGDAAAAGTGAAVLEVAAAAA------AQPGAA----------GGKRTTRGACGRPRV 83
          K GG+A + G G+    V A AA      A+P             GG+    G    P  
Sbjct: 5  KGGGEAESGGGGSGSAPVTAGAAGPAAQEAEPPLTAVLVEEEEEEGGRAGAEGGAAGPDD 64

Query: 84 GPIGVLSSG 92
          G +   SSG
Sbjct: 65 GGVAAASSG 73


>gi|74027249 tripartite motif-containing 33 protein isoform alpha
           [Homo sapiens]
          Length = 1127

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 19  GEADSPAPPPLTR---QSQAADLLKNGGDAAAAGTG----AAVLEVAAAAAAQPGAAGGK 71
           G A   A PPLT    + +  +  + G +  AAG      AA    +A AA+ P A+ G 
Sbjct: 28  GPAAQEAEPPLTAVLVEEEEEEGGRAGAEGGAAGPDDGGVAAASSGSAQAASSPAASVGT 87

Query: 72  RTTRGACGRPRVGPIGVLSSGP 93
               GA   P   P    + GP
Sbjct: 88  GVAGGAVSTPAPAPASAPAPGP 109



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 16/69 (23%)

Query: 40 KNGGDAAAAGTGAAVLEVAAAAA------AQPGAA----------GGKRTTRGACGRPRV 83
          K GG+A + G G+    V A AA      A+P             GG+    G    P  
Sbjct: 5  KGGGEAESGGGGSGSAPVTAGAAGPAAQEAEPPLTAVLVEEEEEEGGRAGAEGGAAGPDD 64

Query: 84 GPIGVLSSG 92
          G +   SSG
Sbjct: 65 GGVAAASSG 73


>gi|46370064 endothelin 3 isoform 1 preproprotein [Homo sapiens]
          Length = 238

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 1  MVAVTVTKAAARASRMRTGEAD----SPAPPPLTRQSQAADLLKNGGDAAAAGTGAAVLE 56
          +  +TVT AA      ++G+A     S AP     +    + +   G+   AG G   + 
Sbjct: 8  LFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVA 67

Query: 57 VAAAAAAQPGAAGGKRTTRGA 77
            A     PG+ G ++   GA
Sbjct: 68 PTALQGPSPGSPGQEQAAEGA 88


>gi|46370062 endothelin 3 isoform 3 preproprotein [Homo sapiens]
          Length = 224

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 1  MVAVTVTKAAARASRMRTGEAD----SPAPPPLTRQSQAADLLKNGGDAAAAGTGAAVLE 56
          +  +TVT AA      ++G+A     S AP     +    + +   G+   AG G   + 
Sbjct: 8  LFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVA 67

Query: 57 VAAAAAAQPGAAGGKRTTRGA 77
            A     PG+ G ++   GA
Sbjct: 68 PTALQGPSPGSPGQEQAAEGA 88


>gi|46370060 endothelin 3 isoform 2 preproprotein [Homo sapiens]
          Length = 219

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 1  MVAVTVTKAAARASRMRTGEAD----SPAPPPLTRQSQAADLLKNGGDAAAAGTGAAVLE 56
          +  +TVT AA      ++G+A     S AP     +    + +   G+   AG G   + 
Sbjct: 8  LFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVA 67

Query: 57 VAAAAAAQPGAAGGKRTTRGA 77
            A     PG+ G ++   GA
Sbjct: 68 PTALQGPSPGSPGQEQAAEGA 88


>gi|4557545 endothelin 3 isoform 1 preproprotein [Homo sapiens]
          Length = 238

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 1  MVAVTVTKAAARASRMRTGEAD----SPAPPPLTRQSQAADLLKNGGDAAAAGTGAAVLE 56
          +  +TVT AA      ++G+A     S AP     +    + +   G+   AG G   + 
Sbjct: 8  LFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVA 67

Query: 57 VAAAAAAQPGAAGGKRTTRGA 77
            A     PG+ G ++   GA
Sbjct: 68 PTALQGPSPGSPGQEQAAEGA 88


>gi|5902724 neuro-oncological ventral antigen 2 [Homo sapiens]
          Length = 492

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 25/56 (44%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 19  GEADSPAPPPLTRQSQAADLLKNG----GDAAAAGTGAAVLEVAAAAAAQPGAAGG 70
           G A  P PPP    S A     NG    G    AG G   L  AAAAA   GAAGG
Sbjct: 341 GAAPPPPPPPGALGSFALAAAANGYLGAGAGGGAGGGGGPLVAAAAAA---GAAGG 393



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 45  AAAAGTGAAVLEVAAAAAAQPGAAGGKRTTRGACGRPRVGPIGVLSSGPP 94
           AAA+G  AAV     AA A P AA          G    GP G  +  PP
Sbjct: 303 AAASGVLAAV-----AAGANPAAAAAANLLASYAGEAGAGPAGGAAPPPP 347


>gi|12707580 paired-like homeobox 2b [Homo sapiens]
          Length = 314

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 42  GGDAAAAGTGAAVLEVAAAAAAQPGAAGGKRTTRGACGR---PRVGPI 86
           GG+    G  AA    AAAAAA   AA G     G  G+   P  GPI
Sbjct: 233 GGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGPI 280



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/43 (39%), Positives = 17/43 (39%)

Query: 42  GGDAAAAGTGAAVLEVAAAAAAQPGAAGGKRTTRGACGRPRVG 84
           GG     G G A    AAAAAA   AA        A G P  G
Sbjct: 230 GGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQG 272


>gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo
           sapiens]
          Length = 731

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 7   TKAAARASRMRTGEADSPAPPPLTRQSQAADLLKNGGDAAAAGTG--AAVLEVAAAAAAQ 64
           + AA+  +   +  + SP+PP +   + A   L +GG A AAG+G     +     A A 
Sbjct: 18  SSAASSVTSASSSLSSSPSPPSVAVSAAA---LVSGGVAQAAGSGGLGGPVRPVLVAPAV 74

Query: 65  PGAAGGKRTT---RGAC-GRPRVGPIGVLSS 91
            G+ GG  +T   R +C  RP  G  G  SS
Sbjct: 75  SGSGGGAVSTGLSRHSCAARPSAGVGGSSSS 105


>gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo
           sapiens]
          Length = 707

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 7   TKAAARASRMRTGEADSPAPPPLTRQSQAADLLKNGGDAAAAGTG--AAVLEVAAAAAAQ 64
           + AA+  +   +  + SP+PP +   + A   L +GG A AAG+G     +     A A 
Sbjct: 18  SSAASSVTSASSSLSSSPSPPSVAVSAAA---LVSGGVAQAAGSGGLGGPVRPVLVAPAV 74

Query: 65  PGAAGGKRTT---RGAC-GRPRVGPIGVLSS 91
            G+ GG  +T   R +C  RP  G  G  SS
Sbjct: 75  SGSGGGAVSTGLSRHSCAARPSAGVGGSSSS 105


>gi|4502739 cyclin-dependent kinase 5, regulatory subunit 2 [Homo
           sapiens]
          Length = 367

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 16/98 (16%)

Query: 4   VTVTKAAARASRMRTGEADSPAPPPLTRQSQAADLLKNGGDAAAAGTGAAVLEV------ 57
           V  +    + S+  T +  S  P PL +Q    +LL+ G D    G  A  L V      
Sbjct: 70  VAASAKKKKGSKKVTPKPASTGPDPLVQQRNRENLLRKGRDPPDGGGTAKPLAVPVPTVP 129

Query: 58  ----------AAAAAAQPGAAGGKRTTRGACGRPRVGP 85
                       +AAAQP  +GG +        P+V P
Sbjct: 130 AAAATCEPPSGGSAAAQPPGSGGGKPPPPPPPAPQVAP 167



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 39  LKNGGDAAAAGTG--AAVLEVAAAAAAQPGAAGGKRTT 74
           LKN G+AAA+G G  +     A++AA    AAG K  T
Sbjct: 325 LKNEGEAAASGGGPPSGGAPAASSAARDSCAAGTKHWT 362


>gi|46488919 astrotactin 2 isoform c [Homo sapiens]
          Length = 1339

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 27/67 (40%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 9   AAARASRMRTGEADSPAPPPLTRQSQAADLLKN--GGDAAAAGTGAAVLEVAAAAAAQPG 66
           A A ASR    E DSP        S    L ++  G   A AG GA     AAAAAA PG
Sbjct: 51  ATAAASR----EPDSPCRLKTVTVSTLPALRESDIGWSGARAGAGAGTGAGAAAAAASPG 106

Query: 67  AAGGKRT 73
           + G   T
Sbjct: 107 SPGSAGT 113


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.125    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,952,790
Number of Sequences: 37866
Number of extensions: 180252
Number of successful extensions: 2147
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 171
Number of HSP's that attempted gapping in prelim test: 1544
Number of HSP's gapped (non-prelim): 581
length of query: 94
length of database: 18,247,518
effective HSP length: 65
effective length of query: 29
effective length of database: 15,786,228
effective search space: 457800612
effective search space used: 457800612
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.