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Search of human proteins with 239743565
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743565 PREDICTED: hypothetical protein XP_002342886 [Homo
sapiens]
(84 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754892 PREDICTED: hypothetical protein [Homo sapiens] 176 5e-45
gi|239749431 PREDICTED: hypothetical protein XP_002347034 [Homo ... 176 5e-45
gi|239743565 PREDICTED: hypothetical protein XP_002342886 [Homo ... 176 5e-45
gi|55956910 meningioma 1 [Homo sapiens] 39 7e-04
gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo ... 37 0.003
gi|239753353 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo ... 37 0.003
gi|239747921 PREDICTED: hypothetical protein XP_002346480 [Homo ... 37 0.003
gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo ... 37 0.003
gi|239741815 PREDICTED: hypothetical protein XP_002342320 [Homo ... 37 0.003
gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo ... 36 0.007
gi|239758151 PREDICTED: hypothetical protein XP_002346314 [Homo ... 35 0.013
gi|239752632 PREDICTED: hypothetical protein XP_002347697 [Homo ... 35 0.013
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 35 0.017
gi|239754342 PREDICTED: hypothetical protein [Homo sapiens] 34 0.022
gi|169164474 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049
gi|239747958 PREDICTED: hypothetical protein isoform 4 [Homo sap... 33 0.049
gi|239741853 PREDICTED: hypothetical protein isoform 2 [Homo sap... 33 0.049
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 33 0.063
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 33 0.063
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 33 0.063
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 32 0.083
gi|239756146 PREDICTED: hypothetical protein XP_002344838 [Homo ... 32 0.083
gi|239750697 PREDICTED: hypothetical protein [Homo sapiens] 32 0.083
gi|239745005 PREDICTED: hypothetical protein XP_002343329 [Homo ... 32 0.083
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 32 0.083
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 32 0.083
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 32 0.083
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 32 0.083
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 32 0.083
>gi|239754892 PREDICTED: hypothetical protein [Homo sapiens]
Length = 84
Score = 176 bits (445), Expect = 5e-45
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MEGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARRGVPA 60
MEGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARRGVPA
Sbjct: 1 MEGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARRGVPA 60
Query: 61 ALTAASSRGDSGGTVTQARRRGAR 84
ALTAASSRGDSGGTVTQARRRGAR
Sbjct: 61 ALTAASSRGDSGGTVTQARRRGAR 84
>gi|239749431 PREDICTED: hypothetical protein XP_002347034 [Homo
sapiens]
Length = 84
Score = 176 bits (445), Expect = 5e-45
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MEGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARRGVPA 60
MEGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARRGVPA
Sbjct: 1 MEGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARRGVPA 60
Query: 61 ALTAASSRGDSGGTVTQARRRGAR 84
ALTAASSRGDSGGTVTQARRRGAR
Sbjct: 61 ALTAASSRGDSGGTVTQARRRGAR 84
>gi|239743565 PREDICTED: hypothetical protein XP_002342886 [Homo
sapiens]
Length = 84
Score = 176 bits (445), Expect = 5e-45
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MEGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARRGVPA 60
MEGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARRGVPA
Sbjct: 1 MEGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARRGVPA 60
Query: 61 ALTAASSRGDSGGTVTQARRRGAR 84
ALTAASSRGDSGGTVTQARRRGAR
Sbjct: 61 ALTAASSRGDSGGTVTQARRRGAR 84
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 39.3 bits (90), Expect = 7e-04
Identities = 31/77 (40%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Query: 3 GRRGRAQSAQAG---PAAACRGGPEEPGRAGLVAGWGARGCRPGFPCGAAGR---PRARR 56
G G+ QS AG P+AA P P A A G +PGFP GAAGR P +
Sbjct: 707 GGLGQLQSPGAGVGLPSAASERRPPPPDFAT-----SALGGQPGFPFGAAGRQSTPHSGP 761
Query: 57 GVPAALTAASSRGDSGG 73
GV + +A G SGG
Sbjct: 762 GVNSPPSAGGGGGSSGG 778
>gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo
sapiens]
Length = 307
Score = 37.0 bits (84), Expect = 0.003
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 2 EGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCR-PGFPCGAAGRPRAR----- 55
EGRR +A+ P RGG P A + G+R PG P AA RP +
Sbjct: 79 EGRRAQARPRPLRPPWEVRGGARGPCSAPV----GSRASSGPGLPSAAAARPARKTLTCQ 134
Query: 56 -RGVPAALTAASSRGDSGGTVTQARRRG 82
R + + TA+S+ SG V Q R G
Sbjct: 135 PRSIESPATASSAGCGSGPRVPQVRLLG 162
>gi|239753353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 448
Score = 37.0 bits (84), Expect = 0.003
Identities = 31/84 (36%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 2 EGR--RGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCRPG-FPCGAAGRPRARRGV 58
EGR RG A++++ P P A L++G RG G F G RPRA RG
Sbjct: 88 EGRQVRGGARNSR-DPGLRSEMRPFREAFAKLLSGSPERGALSGEFSLGLENRPRAHRGA 146
Query: 59 PAALTAASSRGDSGGTVTQARRRG 82
PAA+ G + Q RRRG
Sbjct: 147 PAAVMVVVVMRLRGLSGVQQRRRG 170
>gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo
sapiens]
Length = 325
Score = 37.0 bits (84), Expect = 0.003
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 2 EGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCR-PGFPCGAAGRPRAR----- 55
EGRR +A+ P RGG P A + G+R PG P AA RP +
Sbjct: 97 EGRRAQARPRPLRPPWEVRGGARGPCSAPV----GSRASSGPGLPSAAAARPARKTLTCQ 152
Query: 56 -RGVPAALTAASSRGDSGGTVTQARRRG 82
R + + TA+S+ SG V Q R G
Sbjct: 153 PRSIESPATASSAGCGSGPRVPQVRLLG 180
>gi|239747921 PREDICTED: hypothetical protein XP_002346480 [Homo
sapiens]
Length = 448
Score = 37.0 bits (84), Expect = 0.003
Identities = 31/84 (36%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 2 EGR--RGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCRPG-FPCGAAGRPRARRGV 58
EGR RG A++++ P P A L++G RG G F G RPRA RG
Sbjct: 88 EGRQVRGGARNSR-DPGLRSEMRPFREAFAKLLSGSPERGALSGEFSLGLENRPRAHRGA 146
Query: 59 PAALTAASSRGDSGGTVTQARRRG 82
PAA+ G + Q RRRG
Sbjct: 147 PAAVMVVVVMRLRGLSGVQQRRRG 170
>gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo
sapiens]
Length = 325
Score = 37.0 bits (84), Expect = 0.003
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 2 EGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCR-PGFPCGAAGRPRAR----- 55
EGRR +A+ P RGG P A + G+R PG P AA RP +
Sbjct: 97 EGRRAQARPRPLRPPWEVRGGARGPCSAPV----GSRASSGPGLPSAAAARPARKTLTCQ 152
Query: 56 -RGVPAALTAASSRGDSGGTVTQARRRG 82
R + + TA+S+ SG V Q R G
Sbjct: 153 PRSIESPATASSAGCGSGPRVPQVRLLG 180
>gi|239741815 PREDICTED: hypothetical protein XP_002342320 [Homo
sapiens]
Length = 448
Score = 37.0 bits (84), Expect = 0.003
Identities = 31/84 (36%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 2 EGR--RGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCRPG-FPCGAAGRPRARRGV 58
EGR RG A++++ P P A L++G RG G F G RPRA RG
Sbjct: 88 EGRQVRGGARNSR-DPGLRSEMRPFREAFAKLLSGSPERGALSGEFSLGLENRPRAHRGA 146
Query: 59 PAALTAASSRGDSGGTVTQARRRG 82
PAA+ G + Q RRRG
Sbjct: 147 PAAVMVVVVMRLRGLSGVQQRRRG 170
>gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo
sapiens]
Length = 536
Score = 35.8 bits (81), Expect = 0.007
Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 5 RGRAQSAQAGPAAACR--GG---PEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARRGVP 59
RGR + A A C GG P +PGRAGL WGA G G+ GRP +R+ P
Sbjct: 49 RGRGKPALGAHGAGCSSMGGAPPPTDPGRAGL-RSWGAAGSAR----GSEGRPSSRQARP 103
>gi|239758151 PREDICTED: hypothetical protein XP_002346314 [Homo
sapiens]
Length = 321
Score = 35.0 bits (79), Expect = 0.013
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 4 RRGRAQSAQAGPAAACR-------GGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARR 56
RR +Q A + CR GG ++P R A GA+ R G G+ RR
Sbjct: 123 RRCLSQDASRSGSRVCRSRPQTRGGGGKKPRRGQKAATAGAKS-RGGGVRSRGGKKIRRR 181
Query: 57 GVPAALTAASSRGDSGGTVTQARRRGAR 84
G AA A S G G +AR GAR
Sbjct: 182 GQKAAAAGAKSCGGGGKKPQKARAVGAR 209
>gi|239752632 PREDICTED: hypothetical protein XP_002347697 [Homo
sapiens]
Length = 231
Score = 35.0 bits (79), Expect = 0.013
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 4 RRGRAQSAQAGPAAACR-------GGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARR 56
RR +Q A + CR GG ++P R A GA+ R G G+ RR
Sbjct: 123 RRCLSQDASRSGSRVCRSRPQTRGGGGKKPRRGQKAATAGAKS-RGGGVRSRGGKKIRRR 181
Query: 57 GVPAALTAASSRGDSGGTVTQARRRGAR 84
G AA A S G G +AR GAR
Sbjct: 182 GQKAAAAGAKSCGGGGKKPQKARAVGAR 209
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 34.7 bits (78), Expect = 0.017
Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 18/98 (18%)
Query: 3 GRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGC-----------RPGFP--CGAA 49
G +G A A A RG EPGR G+ G G RG +PG P G +
Sbjct: 501 GEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGES 560
Query: 50 GR-----PRARRGVPAALTAASSRGDSGGTVTQARRRG 82
GR P RG P + +G+ G R G
Sbjct: 561 GRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGG 598
Score = 33.1 bits (74), Expect = 0.049
Identities = 31/83 (37%), Positives = 34/83 (40%), Gaps = 17/83 (20%)
Query: 3 GRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCR-----PGFP--------CGAA 49
G RG A A A RGG EPG+ G G RG R PG P G+
Sbjct: 411 GARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSP 470
Query: 50 GRPRARRGVPAALTAASSRGDSG 72
G P A G+P AA RG G
Sbjct: 471 GEPGA-NGLPG---AAGERGAPG 489
Score = 30.0 bits (66), Expect = 0.41
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 1 MEGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCR--PGFPCGAAGRP-----R 53
+ G +G A + +G P PG G+ GARG PG P G G P +
Sbjct: 919 VSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMP-GPRGSPGPQGVK 977
Query: 54 ARRGVPAALTAASSRGDSG 72
G P A + RG G
Sbjct: 978 GESGKPGANGLSGERGPPG 996
Score = 29.6 bits (65), Expect = 0.54
Identities = 28/90 (31%), Positives = 34/90 (37%), Gaps = 18/90 (20%)
Query: 1 MEGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARG--------CRPGFP-----CG 47
++G G A RG P E GR GL GARG +PG P G
Sbjct: 283 LKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAG 342
Query: 48 AAGRPRAR-----RGVPAALTAASSRGDSG 72
G P A+ G P + A RG+ G
Sbjct: 343 FPGSPGAKGEVGPAGSPGSNGAPGQRGEPG 372
Score = 26.6 bits (57), Expect = 4.5
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 21 GGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARRGVPAALTAASSRGDSG 72
G P EPG G GA G + G AG P RG P A RG +G
Sbjct: 654 GKPGEPGPKGDAGAPGAPGGK-----GDAGAP-GERGPPGLAGAPGLRGGAG 699
Score = 26.6 bits (57), Expect = 4.5
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 15/76 (19%)
Query: 3 GRRG-RAQSAQAGPAAA-----CRGGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARR 56
G+ G R +S AGPA A RG P G G G R GAAG + R
Sbjct: 1059 GKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGER--------GAAG-IKGHR 1109
Query: 57 GVPAALTAASSRGDSG 72
G P A S G +G
Sbjct: 1110 GFPGNPGAPGSPGPAG 1125
>gi|239754342 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 34.3 bits (77), Expect = 0.022
Identities = 35/86 (40%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 8 AQSAQAGPAAACRGGPEEPG---RAGLV-AGWGAR-GCRPGFPCGAAGRPRARRGV---- 58
A+SA++ P A GG PG R GL A AR GCR F C AA RP AR+ +
Sbjct: 30 ARSARS-PLGARAGGARVPGARPRGGLPRARVRARPGCRAPFLCTAAVRPAARQRLGSRG 88
Query: 59 PAALTAASSRGDSGGTVTQARRRGAR 84
AA T+ SS G V + G+R
Sbjct: 89 AAAATSWSSACRGRGRVCEREGEGSR 114
>gi|169164474 PREDICTED: hypothetical protein [Homo sapiens]
Length = 259
Score = 33.1 bits (74), Expect = 0.049
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 9 QSAQAGPAAACRGGPEEPGRAGLVAGWG-ARGCRPGFPCGAAGRPRARRGVPAALTAASS 67
+S G R G EP R+ V GWG AR RPG G RA RG A+
Sbjct: 46 RSRTPGTWCRVREGEAEPARS--VCGWGGARSGRPGGGAGGRRCARATRG-GGGCARATR 102
Query: 68 RGDSGGTVTQARRRGA 83
GD G V R A
Sbjct: 103 GGDLGWAVALPHRPSA 118
>gi|239747958 PREDICTED: hypothetical protein isoform 4 [Homo
sapiens]
Length = 259
Score = 33.1 bits (74), Expect = 0.049
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 9 QSAQAGPAAACRGGPEEPGRAGLVAGWG-ARGCRPGFPCGAAGRPRARRGVPAALTAASS 67
+S G R G EP R+ V GWG AR RPG G RA RG A+
Sbjct: 46 RSRTPGTWCRVREGEAEPARS--VCGWGGARSGRPGGGAGGRRCARATRG-GGGCARATR 102
Query: 68 RGDSGGTVTQARRRGA 83
GD G V R A
Sbjct: 103 GGDLGWAVALPHRPSA 118
>gi|239741853 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 259
Score = 33.1 bits (74), Expect = 0.049
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 9 QSAQAGPAAACRGGPEEPGRAGLVAGWG-ARGCRPGFPCGAAGRPRARRGVPAALTAASS 67
+S G R G EP R+ V GWG AR RPG G RA RG A+
Sbjct: 46 RSRTPGTWCRVREGEAEPARS--VCGWGGARSGRPGGGAGGRRCARATRG-GGGCARATR 102
Query: 68 RGDSGGTVTQARRRGA 83
GD G V R A
Sbjct: 103 GGDLGWAVALPHRPSA 118
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 32.7 bits (73), Expect = 0.063
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 20 RGGPEEPGRAGLV--AGWGARGCRPGFPCGAAGRP-----RARRGVPAALTAASSRGDSG 72
+G P PG+ G+ AG R PG P G G P + RG P + SRGD+G
Sbjct: 543 KGDPGFPGQPGMTGRAGSPGRDGHPGLP-GPKGSPGSVGLKGERGPPGGVGFPGSRGDTG 601
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 32.7 bits (73), Expect = 0.063
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 15 PAAACRGGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARRGVPAALTAASSRGDSGGT 74
P + G P GR G AG G+RG P CG G R PA+ A ++R +GGT
Sbjct: 287 PRSGFSGRPR--GRGGAAAGRGSRGEHPA--CG-VGLARGTAPQPASTWALAARPRAGGT 341
Query: 75 VT 76
T
Sbjct: 342 WT 343
Score = 28.1 bits (61), Expect = 1.6
Identities = 31/86 (36%), Positives = 37/86 (43%), Gaps = 17/86 (19%)
Query: 4 RRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGAR-GCRPGFPCGAAGRPRARRGVPAA- 61
R A A+ GPAA G P P G R PG PRA RG PA+
Sbjct: 405 RPSGAGPAREGPAAWPGGAPTPPHARPT----GRRQDPEPG--------PRAPRGGPASS 452
Query: 62 ---LTAASSRGDSGGTVTQARRRGAR 84
+A+ RG G ++ARRR AR
Sbjct: 453 GWHAGSAAGRGWDPGGGSRARRRAAR 478
Score = 27.7 bits (60), Expect = 2.0
Identities = 26/82 (31%), Positives = 29/82 (35%), Gaps = 17/82 (20%)
Query: 6 GRAQSAQAGPAAACRGGPEEPG-RAGLVAGWG---------------ARGCRPGFPCGAA 49
GR Q + GP A RGGP G AG AG G RGC
Sbjct: 433 GRRQDPEPGPRAP-RGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARSSPH 491
Query: 50 GRPRARRGVPAALTAASSRGDS 71
RP L +A+ RG S
Sbjct: 492 ARPLGSSRSVRLLRSAAGRGPS 513
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 32.7 bits (73), Expect = 0.063
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 15 PAAACRGGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARRGVPAALTAASSRGDSGGT 74
P + G P GR G AG G+RG P CG G R PA+ A ++R +GGT
Sbjct: 287 PRSGFSGRPR--GRGGAAAGRGSRGEHPA--CG-VGLARGTAPQPASTWALAARPRAGGT 341
Query: 75 VT 76
T
Sbjct: 342 WT 343
Score = 28.1 bits (61), Expect = 1.6
Identities = 31/86 (36%), Positives = 37/86 (43%), Gaps = 17/86 (19%)
Query: 4 RRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGAR-GCRPGFPCGAAGRPRARRGVPAA- 61
R A A+ GPAA G P P G R PG PRA RG PA+
Sbjct: 405 RPSGAGPAREGPAAWPGGAPTPPHARPT----GRRQDPEPG--------PRAPRGGPASS 452
Query: 62 ---LTAASSRGDSGGTVTQARRRGAR 84
+A+ RG G ++ARRR AR
Sbjct: 453 GWHAGSAAGRGWDPGGGSRARRRAAR 478
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 32.3 bits (72), Expect = 0.083
Identities = 30/83 (36%), Positives = 34/83 (40%), Gaps = 12/83 (14%)
Query: 1 MEGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARG----CRPGFPCGAAGR----- 51
M G RG A + GP RGG E G G GARG P P G G
Sbjct: 763 MPGERGIAGTP--GPKGD-RGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPG 819
Query: 52 PRARRGVPAALTAASSRGDSGGT 74
PR G P + SRG++G T
Sbjct: 820 PRGLVGPPGSRGNPGSRGENGPT 842
Score = 30.0 bits (66), Expect = 0.41
Identities = 26/68 (38%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 7 RAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCR--PGFPCGAAGRPRARRGVPAALTA 64
+ Q AGP G P EPG G + G+RG PG P G G P R G P +
Sbjct: 227 QGQQGGAGPT----GPPGEPGDPGPMGPIGSRGPEGPPGKP-GEDGEP-GRNGNPGEVGF 280
Query: 65 ASSRGDSG 72
A S G G
Sbjct: 281 AGSPGARG 288
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 2 EGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARRGVPAA 61
EG G + A RG +PG AGL GA G PG P GA G +RG P +
Sbjct: 1049 EGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPG-TPG-PVGAPG-DAGQRGDPGS 1105
Query: 62 LTAASSRGDSG 72
G +G
Sbjct: 1106 RGPIGPPGRAG 1116
Score = 26.9 bits (58), Expect = 3.5
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Query: 14 GPAAACRGGPEEPGRAGLVAGWGARGCRPGF-----PCGAAG-----RPRARRGVPAALT 63
GPA G EPG GLV G+RG PG P GA G P + GV
Sbjct: 807 GPAGPT-GEKGEPGPRGLVGPPGSRG-NPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPG 864
Query: 64 AASSRGDSG 72
+GD+G
Sbjct: 865 EPGQKGDAG 873
Score = 26.6 bits (57), Expect = 4.5
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 2 EGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCRPGF--------PCGAAGRPR 53
+G RG S+ GP + +G P PG GL G G PG P GA G
Sbjct: 542 QGERGPVGSS--GPKGS-QGDPGRPGEPGLPGARGLTG-NPGVQGPEGKLGPLGAPGED- 596
Query: 54 ARRGVPAALTAASSRGDSG 72
R G P ++ G G
Sbjct: 597 GRPGPPGSIGIRGQPGSMG 615
>gi|239756146 PREDICTED: hypothetical protein XP_002344838 [Homo
sapiens]
Length = 86
Score = 32.3 bits (72), Expect = 0.083
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 2 EGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGC 40
E R R +S++AGP PEE G GL+ GARGC
Sbjct: 21 EEMRRREESSRAGP-------PEELGHVGLLWALGARGC 52
>gi|239750697 PREDICTED: hypothetical protein [Homo sapiens]
Length = 86
Score = 32.3 bits (72), Expect = 0.083
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 2 EGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGC 40
E R R +S++AGP PEE G GL+ GARGC
Sbjct: 21 EEMRRREESSRAGP-------PEELGHVGLLWALGARGC 52
>gi|239745005 PREDICTED: hypothetical protein XP_002343329 [Homo
sapiens]
Length = 86
Score = 32.3 bits (72), Expect = 0.083
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 2 EGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGC 40
E R R +S++AGP PEE G GL+ GARGC
Sbjct: 21 EEMRRREESSRAGP-------PEELGHVGLLWALGARGC 52
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 32.3 bits (72), Expect = 0.083
Identities = 30/85 (35%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 5 RGRAQSAQAGPAAACRGGPEEPGRA-GLVAGWGARGCRPG---FPCGAAGRPRARRGVPA 60
R R + A G G P RA GL A A R G P AAG RR P
Sbjct: 1325 RPRLEEAPGGQGRPEAGRPASEARAPGLAAADAADAARAGGKEAPRAAAGSELCRREGPG 1384
Query: 61 ALTAASSRGDSGGTVTQAR-RRGAR 84
A A + G G +A R GAR
Sbjct: 1385 AAPAFAGPGGGGSGALEAEGRAGAR 1409
Score = 25.8 bits (55), Expect = 7.8
Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 13/59 (22%)
Query: 8 AQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARRGVPAALTAAS 66
A A AGP G E GRAG A G RPG PR G PA A +
Sbjct: 1385 AAPAFAGPGGGGSGALEAEGRAGARA-----GPRPG--------PRPPGGAPARKAAVA 1430
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 32.3 bits (72), Expect = 0.083
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 20 RGGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARRGV-PAALTAASSRGDSGGTVTQA 78
+GGP +PG GL G G P GA G P R + PA + S G V A
Sbjct: 982 KGGPGDPGPTGLKGDKGPPG-----PVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPA 1036
Query: 79 RRRGAR 84
++G+R
Sbjct: 1037 GKKGSR 1042
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 32.3 bits (72), Expect = 0.083
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 1 MEGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARRGVPA 60
+ GR G A P RG P GR AG+ RG G P G+ R RG PA
Sbjct: 401 VRGRGGGRGGRGAPPPPRGRGAPPPRGR----AGYSQRGAPLGPPRGS----RGGRGGPA 452
Query: 61 ----ALTAASSRGDSGGTVTQARR 80
+ SRG+ GG V R+
Sbjct: 453 QQQRGRGSRGSRGNRGGNVGGKRK 476
Score = 32.0 bits (71), Expect = 0.11
Identities = 30/81 (37%), Positives = 32/81 (39%), Gaps = 20/81 (24%)
Query: 20 RGGPEEP-----------GRAGLVAGWGARGCRPGFPCGAAGRPRAR-----RGVPAALT 63
RGG E+P GR G G G RG P A PR R RG P
Sbjct: 385 RGGYEDPYYGYDDGYAVRGRGG---GRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLG-P 440
Query: 64 AASSRGDSGGTVTQARRRGAR 84
SRG GG Q R RG+R
Sbjct: 441 PRGSRGGRGGPAQQQRGRGSR 461
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 32.3 bits (72), Expect = 0.083
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 1 MEGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARRGVPA 60
+ GR G A P RG P GR AG+ RG G P G+ R RG PA
Sbjct: 502 VRGRGGGRGGRGAPPPPRGRGAPPPRGR----AGYSQRGAPLGPPRGS----RGGRGGPA 553
Query: 61 ----ALTAASSRGDSGGTVTQARR 80
+ SRG+ GG V R+
Sbjct: 554 QQQRGRGSRGSRGNRGGNVGGKRK 577
Score = 32.0 bits (71), Expect = 0.11
Identities = 30/81 (37%), Positives = 32/81 (39%), Gaps = 20/81 (24%)
Query: 20 RGGPEEP-----------GRAGLVAGWGARGCRPGFPCGAAGRPRAR-----RGVPAALT 63
RGG E+P GR G G G RG P A PR R RG P
Sbjct: 486 RGGYEDPYYGYDDGYAVRGRGG---GRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLG-P 541
Query: 64 AASSRGDSGGTVTQARRRGAR 84
SRG GG Q R RG+R
Sbjct: 542 PRGSRGGRGGPAQQQRGRGSR 562
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 32.3 bits (72), Expect = 0.083
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 1 MEGRRGRAQSAQAGPAAACRGGPEEPGRAGLVAGWGARGCRPGFPCGAAGRPRARRGVPA 60
+ GR G A P RG P GR AG+ RG G P G+ R RG PA
Sbjct: 398 VRGRGGGRGGRGAPPPPRGRGAPPPRGR----AGYSQRGAPLGPPRGS----RGGRGGPA 449
Query: 61 ----ALTAASSRGDSGGTVTQARR 80
+ SRG+ GG V R+
Sbjct: 450 QQQRGRGSRGSRGNRGGNVGGKRK 473
Score = 32.0 bits (71), Expect = 0.11
Identities = 30/81 (37%), Positives = 32/81 (39%), Gaps = 20/81 (24%)
Query: 20 RGGPEEP-----------GRAGLVAGWGARGCRPGFPCGAAGRPRAR-----RGVPAALT 63
RGG E+P GR G G G RG P A PR R RG P
Sbjct: 382 RGGYEDPYYGYDDGYAVRGRGG---GRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLG-P 437
Query: 64 AASSRGDSGGTVTQARRRGAR 84
SRG GG Q R RG+R
Sbjct: 438 PRGSRGGRGGPAQQQRGRGSR 458
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,985,153
Number of Sequences: 37866
Number of extensions: 212492
Number of successful extensions: 1918
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 265
Number of HSP's that attempted gapping in prelim test: 1568
Number of HSP's gapped (non-prelim): 606
length of query: 84
length of database: 18,247,518
effective HSP length: 56
effective length of query: 28
effective length of database: 16,127,022
effective search space: 451556616
effective search space used: 451556616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.