Guide to the Human Genome
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Name: LOC100289195 Sequence: fasta or formatted (299aa) NCBI GI: 239743017
Description:

PREDICTED: hypothetical protein XP_002342719

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         23           2
 C cysteine            5.0         15           1
 D aspartate           2.7          8           1
 E glutamate           3.0          9           1
 F phenylalanine       3.7         11           1
 G glycine             8.0         24           2
 H histidine           3.3         10           1
 I isoleucine          4.0         12           3
 K lysine              5.7         17           2
 L leucine            10.0         30           2
 M methionine          1.0          3           1
 N asparagine          3.7         11           2
 P proline             8.4         25           2
 Q glutamine           3.0          9           1
 R arginine            6.7         20           2
 S serine              8.7         26           3
 T threonine           3.3         10           2
 V valine              7.0         21           1
 W tryptophan          2.0          6           1
 Y tyrosine            3.0          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342719 
PLG                   0.466   plasminogen 
LPA                   0.443   lipoprotein Lp(a) precursor 
TMPRSS3               0.125   transmembrane protease, serine 3 isoform 1 
TMPRSS13              0.119   transmembrane protease, serine 13 
ACR                   0.105   acrosin precursor 
TMPRSS5               0.105   transmembrane protease, serine 5 
PRSS7                 0.105   enterokinase precursor 
KLKB1                 0.104   plasma kallikrein B1 precursor 
LOC646960             0.102   PREDICTED: similar to hCG1818432 
LOC646960             0.102   PREDICTED: similar to hCG1818432 
LOC646960             0.102   PREDICTED: hypothetical protein LOC646960 
HGFAC                 0.102   HGF activator preproprotein 
TMPRSS11F             0.102   transmembrane protease, serine 11F 
TMPRSS11E             0.100   transmembrane protease, serine 11E 
TMPRSS11E2            0.100   transmembrane protease, serine 11E2 
PLAU                  0.099   plasminogen activator, urokinase isoform 2 
PLAU                  0.099   plasminogen activator, urokinase isoform 1 preproprot...
TMPRSS4               0.099   transmembrane protease, serine 4 isoform 3 
TMPRSS4               0.099   transmembrane protease, serine 4 isoform 1 
PRSS33                0.099   protease, serine, 33 
TMPRSS11D             0.099   transmembrane protease, serine 11D 
HPN                   0.097   hepsin 
LOC645529             0.097   PREDICTED: similar to ACR 
HPN                   0.097   hepsin 
PRSS21                0.096   testisin isoform 1 
PRSS21                0.096   testisin isoform 2 
TMPRSS7               0.096   transmembrane protease, serine 7 
PRSS1                 0.096   protease, serine, 1 preproprotein 
F11                   0.096   coagulation factor XI precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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