Guide to the Human Genome
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Search of human proteins with 239742896

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742896 PREDICTED: hypothetical protein [Homo sapiens]
         (135 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754316 PREDICTED: hypothetical protein [Homo sapiens]           272   5e-74
gi|239748867 PREDICTED: hypothetical protein [Homo sapiens]           272   5e-74
gi|239742896 PREDICTED: hypothetical protein [Homo sapiens]           272   5e-74
gi|239752728 PREDICTED: hypothetical protein [Homo sapiens]            41   3e-04
gi|239741092 PREDICTED: hypothetical protein XP_002342089 [Homo ...    41   3e-04
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]            39   0.001
gi|239748304 PREDICTED: hypothetical protein XP_002346608 [Homo ...    37   0.006
gi|239742202 PREDICTED: hypothetical protein XP_002342450 [Homo ...    37   0.006
gi|19924099 synapsin I isoform Ia [Homo sapiens]                       34   0.041
gi|19924097 synapsin I isoform Ib [Homo sapiens]                       34   0.041
gi|38348236 zinc finger protein 497 [Homo sapiens]                     33   0.054
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac...    32   0.12 
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]            32   0.12 
gi|239753102 PREDICTED: hypothetical protein [Homo sapiens]            32   0.12 
gi|194272142 myosin IXB isoform 2 [Homo sapiens]                       32   0.12 
gi|33356170 myosin IXB isoform 1 [Homo sapiens]                        32   0.12 
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ...    32   0.16 
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ...    32   0.16 
gi|239757843 PREDICTED: hypothetical protein XP_002346356 [Homo ...    32   0.20 
gi|239752359 PREDICTED: hypothetical protein XP_002348213 [Homo ...    32   0.20 
gi|239746873 PREDICTED: hypothetical protein XP_002343872 [Homo ...    32   0.20 
gi|47078224 AT rich interactive domain 5A [Homo sapiens]               32   0.20 
gi|122937424 one cut homeobox 3 [Homo sapiens]                         32   0.20 
gi|157909822 pragmin [Homo sapiens]                                    31   0.27 
gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens]          31   0.27 
gi|239757400 PREDICTED: hypothetical protein LOC147670 [Homo sap...    31   0.35 
gi|169214485 PREDICTED: hypothetical protein LOC147670 [Homo sap...    31   0.35 
gi|169213439 PREDICTED: hypothetical protein LOC147670 [Homo sap...    31   0.35 
gi|153792074 proline rich 12 [Homo sapiens]                            31   0.35 
gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo ...    30   0.45 

>gi|239754316 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 135

 Score =  272 bits (696), Expect = 5e-74
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDSARHLGKPILQDLG 60
           MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDSARHLGKPILQDLG
Sbjct: 1   MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDSARHLGKPILQDLG 60

Query: 61  QAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAG 120
           QAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAG
Sbjct: 61  QAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAG 120

Query: 121 SARGSGREEETAGGG 135
           SARGSGREEETAGGG
Sbjct: 121 SARGSGREEETAGGG 135


>gi|239748867 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 135

 Score =  272 bits (696), Expect = 5e-74
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDSARHLGKPILQDLG 60
           MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDSARHLGKPILQDLG
Sbjct: 1   MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDSARHLGKPILQDLG 60

Query: 61  QAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAG 120
           QAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAG
Sbjct: 61  QAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAG 120

Query: 121 SARGSGREEETAGGG 135
           SARGSGREEETAGGG
Sbjct: 121 SARGSGREEETAGGG 135


>gi|239742896 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 135

 Score =  272 bits (696), Expect = 5e-74
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDSARHLGKPILQDLG 60
           MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDSARHLGKPILQDLG
Sbjct: 1   MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDSARHLGKPILQDLG 60

Query: 61  QAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAG 120
           QAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAG
Sbjct: 61  QAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAG 120

Query: 121 SARGSGREEETAGGG 135
           SARGSGREEETAGGG
Sbjct: 121 SARGSGREEETAGGG 135


>gi|239752728 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 246

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 1   MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHI 42
           +GPD+  LVV L++  E+ AP + +  VA  DVRLPEE  H+
Sbjct: 192 VGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHL 233


>gi|239741092 PREDICTED: hypothetical protein XP_002342089 [Homo
           sapiens]
          Length = 246

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 1   MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHI 42
           +GPD+  LVV L++  E+ AP + +  VA  DVRLPEE  H+
Sbjct: 192 VGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHL 233


>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 380

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 29/71 (40%), Positives = 34/71 (47%), Gaps = 13/71 (18%)

Query: 62  AAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAGS 121
           A QL+PA RQ AQA   G RH S     P AR PA  + RSR        PR+   A+  
Sbjct: 154 AVQLVPAPRQAAQAADTGPRHAS-----PGARRPAPGARRSR--------PRLLRPASPP 200

Query: 122 ARGSGREEETA 132
            R + R   TA
Sbjct: 201 PRPAPRRRSTA 211


>gi|239748304 PREDICTED: hypothetical protein XP_002346608 [Homo
           sapiens]
          Length = 285

 Score = 36.6 bits (83), Expect = 0.006
 Identities = 22/42 (52%), Positives = 24/42 (57%), Gaps = 5/42 (11%)

Query: 62  AAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSR 103
           A QL+PA RQ AQA   G RH S     P AR PA  + RSR
Sbjct: 154 AVQLVPAPRQAAQAADTGPRHAS-----PGARRPAPGARRSR 190


>gi|239742202 PREDICTED: hypothetical protein XP_002342450 [Homo
           sapiens]
          Length = 272

 Score = 36.6 bits (83), Expect = 0.006
 Identities = 22/42 (52%), Positives = 24/42 (57%), Gaps = 5/42 (11%)

Query: 62  AAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSR 103
           A QL+PA RQ AQA   G RH S     P AR PA  + RSR
Sbjct: 141 AVQLVPAPRQAAQAADTGPRHAS-----PGARRPAPGARRSR 177


>gi|19924099 synapsin I isoform Ia [Homo sapiens]
          Length = 705

 Score = 33.9 bits (76), Expect = 0.041
 Identities = 28/70 (40%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 57  QDLGQAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVP-ATSFPRVA 115
           Q   QAA   P   QG Q+    G    GP A P AR PA PSP+ + G P AT    V+
Sbjct: 517 QPASQAAP--PTQGQGRQSRPVAG----GPGAPPAARPPASPSPQRQAGPPQATRQTSVS 570

Query: 116 VTAAGSARGS 125
             A   A G+
Sbjct: 571 GPAPPKASGA 580


>gi|19924097 synapsin I isoform Ib [Homo sapiens]
          Length = 669

 Score = 33.9 bits (76), Expect = 0.041
 Identities = 28/70 (40%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 57  QDLGQAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVP-ATSFPRVA 115
           Q   QAA   P   QG Q+    G    GP A P AR PA PSP+ + G P AT    V+
Sbjct: 517 QPASQAAP--PTQGQGRQSRPVAG----GPGAPPAARPPASPSPQRQAGPPQATRQTSVS 570

Query: 116 VTAAGSARGS 125
             A   A G+
Sbjct: 571 GPAPPKASGA 580


>gi|38348236 zinc finger protein 497 [Homo sapiens]
          Length = 498

 Score = 33.5 bits (75), Expect = 0.054
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 45  WDSARHLGKPILQDLGQAAQLLPADRQGAQALQ----DGGRHGSGPHALPRARSPARPSP 100
           W+++  + +       Q A L  AD QG    +    DGGR G+GP + P  R+  RPSP
Sbjct: 41  WENSTEVPREAGDGQRQQATLGAADEQGGPGRELGPADGGRDGAGPRSEPADRA-LRPSP 99


>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
            RhoGEF isoform b [Homo sapiens]
          Length = 7968

 Score = 32.3 bits (72), Expect = 0.12
 Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 14/118 (11%)

Query: 3    PDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDS------ARHLGKPIL 56
            P ++H V+  + A E  A L+ +       +RLP    H+    S      +    +P  
Sbjct: 6917 PLMEHRVLEEEAAREEQATLLAKAPSFETALRLPASGTHLAPGHSHSLEHDSPSTPRPSS 6976

Query: 57   QDLGQAAQLLPADRQGAQALQDGGRHGSGPHALPRA------RSPARPSPRSRLGVPA 108
            +  G+A Q LP+   G   ++D G H  G   LP          P RPSP S  G PA
Sbjct: 6977 EACGEA-QRLPSAPSGGAPIRDMG-HPQGSKQLPSTGGHPGTAQPERPSPDSPWGQPA 7032


>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 819

 Score = 32.3 bits (72), Expect = 0.12
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 68  ADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAGSARGSGR 127
           A+  G +A   G +  S     PR + PA    +SR+G   +   + AV A  ++ G G 
Sbjct: 506 AEAAGEKATAAGAK--SRGRKQPRRQKPAVAGAKSRVGGSKSRQRQKAVAAGATSHGGGG 563

Query: 128 EEETAGGG 135
            +++ GGG
Sbjct: 564 NKQSRGGG 571


>gi|239753102 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 252

 Score = 32.3 bits (72), Expect = 0.12
 Identities = 39/129 (30%), Positives = 53/129 (41%), Gaps = 18/129 (13%)

Query: 20  APLVPRGAVAGADVRL--PEELGHIRFWDSARHLGKP--ILQDLGQAAQLLPADRQGAQA 75
           APL+P GA   A  RL  P    H+      R    P  +   LG AAQ      +   A
Sbjct: 57  APLLPCGAGGRALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQ----GPEDGLA 112

Query: 76  LQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAGS---------ARGSG 126
            +      + P+  P    P+ P+P++R   P++  PR     AG+         ARG G
Sbjct: 113 RRKDTEAPTFPNPAPLLLPPSLPAPKARGSYPSSG-PRSLPNPAGTRRSAVPSWGARGWG 171

Query: 127 REEETAGGG 135
             EET  GG
Sbjct: 172 GSEETRWGG 180


>gi|194272142 myosin IXB isoform 2 [Homo sapiens]
          Length = 2022

 Score = 32.3 bits (72), Expect = 0.12
 Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 60   GQAAQLLPADRQGAQALQDGGRHGSGPHALPRARSP-ARPSPRSRLGVPATSFPRVAVTA 118
            GQAA       QG +  +DGG   S P   P  RSP    SP      P  + P     A
Sbjct: 1075 GQAAGGQQVAEQGPEPAEDGGHLASEPEVQPSDRSPLEHSSPEKEAPSPEKTLPPQKTVA 1134

Query: 119  AGS 121
            A S
Sbjct: 1135 AES 1137


>gi|33356170 myosin IXB isoform 1 [Homo sapiens]
          Length = 2157

 Score = 32.3 bits (72), Expect = 0.12
 Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 60   GQAAQLLPADRQGAQALQDGGRHGSGPHALPRARSP-ARPSPRSRLGVPATSFPRVAVTA 118
            GQAA       QG +  +DGG   S P   P  RSP    SP      P  + P     A
Sbjct: 1075 GQAAGGQQVAEQGPEPAEDGGHLASEPEVQPSDRSPLEHSSPEKEAPSPEKTLPPQKTVA 1134

Query: 119  AGS 121
            A S
Sbjct: 1135 AES 1137


>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
           sapiens]
          Length = 594

 Score = 32.0 bits (71), Expect = 0.16
 Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 73  AQALQDGGRHGSGPHALPRARSPARP-----SPRSRLGVPATSFPRVAVTAAGSARGSGR 127
           AQ  + GGR G GP A P A    RP     SP    G P     R    A  SAR S R
Sbjct: 516 AQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSLR 575

Query: 128 EEETAGGG 135
           +    GGG
Sbjct: 576 D---PGGG 580


>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
           sapiens]
          Length = 594

 Score = 32.0 bits (71), Expect = 0.16
 Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 73  AQALQDGGRHGSGPHALPRARSPARP-----SPRSRLGVPATSFPRVAVTAAGSARGSGR 127
           AQ  + GGR G GP A P A    RP     SP    G P     R    A  SAR S R
Sbjct: 516 AQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSLR 575

Query: 128 EEETAGGG 135
           +    GGG
Sbjct: 576 D---PGGG 580


>gi|239757843 PREDICTED: hypothetical protein XP_002346356 [Homo
           sapiens]
          Length = 95

 Score = 31.6 bits (70), Expect = 0.20
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 51  LGKPILQDLGQAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVP 107
           LG+ +   + + A    A R+ A+     G+   GPH  P  R P RP P + LG P
Sbjct: 39  LGREVGDSVNEGADCRRALRRLAECGTPRGQE-QGPHYRPTPRLPHRPFPAAALGAP 94


>gi|239752359 PREDICTED: hypothetical protein XP_002348213 [Homo
           sapiens]
          Length = 95

 Score = 31.6 bits (70), Expect = 0.20
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 51  LGKPILQDLGQAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVP 107
           LG+ +   + + A    A R+ A+     G+   GPH  P  R P RP P + LG P
Sbjct: 39  LGREVGDSVNEGADCRRALRRLAECGTPRGQE-QGPHYRPTPRLPHRPFPAAALGAP 94


>gi|239746873 PREDICTED: hypothetical protein XP_002343872 [Homo
           sapiens]
          Length = 95

 Score = 31.6 bits (70), Expect = 0.20
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 51  LGKPILQDLGQAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVP 107
           LG+ +   + + A    A R+ A+     G+   GPH  P  R P RP P + LG P
Sbjct: 39  LGREVGDSVNEGADCRRALRRLAECGTPRGQE-QGPHYRPTPRLPHRPFPAAALGAP 94


>gi|47078224 AT rich interactive domain 5A [Homo sapiens]
          Length = 594

 Score = 31.6 bits (70), Expect = 0.20
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 71  QGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAGSARGSGREEE 130
           +  Q  ++G RHG+ P A P    P   SP+S  G+   S  R+       A G    EE
Sbjct: 271 EALQCQEEGCRHGAEPQASPAVHLP--ESPQSPKGLTENSRHRLTPQEGLQAPGGSLREE 328

Query: 131 TAGG 134
              G
Sbjct: 329 AQAG 332


>gi|122937424 one cut homeobox 3 [Homo sapiens]
          Length = 494

 Score = 31.6 bits (70), Expect = 0.20
 Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 7/86 (8%)

Query: 56  LQDLGQAAQLLPADRQGAQALQDGGRHGSGPHALPR-ARSPARPSPRSRLGVPAT-SF-- 111
           LQ L   A +     Q A A    G HG  PHA P  A +P  P P  RL    + SF  
Sbjct: 111 LQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTL 170

Query: 112 ---PRVAVTAAGSARGSGREEETAGG 134
               R A+ + G   G   +E  A G
Sbjct: 171 MRDERAALASVGHLYGPYGKELPAMG 196


>gi|157909822 pragmin [Homo sapiens]
          Length = 1402

 Score = 31.2 bits (69), Expect = 0.27
 Identities = 40/157 (25%), Positives = 51/157 (32%), Gaps = 32/157 (20%)

Query: 3   PDVDHLVVFLKEAEEVVAPLVPRGAV------------AGADVRLPEELGHIRFWDSARH 50
           P+ DH  ++L   +  V    PRG V            AG  +   E   H       + 
Sbjct: 479 PEEDHRTIYLSSPDSAVGVQWPRGPVSQNSEVGEEETSAGQGLSSRESHAHSASESKPKE 538

Query: 51  -------------LGKPILQDLGQAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPAR 97
                        +G P+    G       AD      L DG   GS     P ++ PA 
Sbjct: 539 RPAIPPKLSKSSPVGSPVSPSAGGPPVSPLAD------LSDGSSGGSSIGPQPPSQGPAD 592

Query: 98  PSPRSRLGVPATSFP-RVAVTAAGSARGSGREEETAG 133
           P+P  R    A S P R    AA SA    R    AG
Sbjct: 593 PAPSCRTNGVAISDPSRCPQPAASSASEQRRPRFQAG 629


>gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens]
          Length = 398

 Score = 31.2 bits (69), Expect = 0.27
 Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 20/97 (20%)

Query: 59  LGQAAQLLPADRQGAQALQDGGRHG---SGPHALPRARSPARPSPR-------------- 101
           LG A+ + P++  G+       RH    S P  L R RSP RP                 
Sbjct: 97  LGAASTVDPSESTGSSTAPPTKRHCRSLSEPEELVRCRSPWRPGSSKVWTPVSKRRCDSG 156

Query: 102 ---SRLGVPATSFPRVAVTAAGSARGSGREEETAGGG 135
              +R G P    PR AV + G    +     +A GG
Sbjct: 157 GSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASGG 193


>gi|239757400 PREDICTED: hypothetical protein LOC147670 [Homo
           sapiens]
          Length = 338

 Score = 30.8 bits (68), Expect = 0.35
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 80  GRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVA--VTAAGSARGSGREEETAG 133
           G++GS P A P+AR    PS      +P T   R A   T  G  + +G     AG
Sbjct: 65  GQNGSAPQAAPQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAG 120


>gi|169214485 PREDICTED: hypothetical protein LOC147670 [Homo
           sapiens]
          Length = 338

 Score = 30.8 bits (68), Expect = 0.35
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 80  GRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVA--VTAAGSARGSGREEETAG 133
           G++GS P A P+AR    PS      +P T   R A   T  G  + +G     AG
Sbjct: 65  GQNGSAPQAAPQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAG 120


>gi|169213439 PREDICTED: hypothetical protein LOC147670 [Homo
           sapiens]
          Length = 338

 Score = 30.8 bits (68), Expect = 0.35
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 80  GRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVA--VTAAGSARGSGREEETAG 133
           G++GS P A P+AR    PS      +P T   R A   T  G  + +G     AG
Sbjct: 65  GQNGSAPQAAPQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAG 120


>gi|153792074 proline rich 12 [Homo sapiens]
          Length = 2036

 Score = 30.8 bits (68), Expect = 0.35
 Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 10/67 (14%)

Query: 78   DGGRHGSGPHALPRARSPARPSPRSR---LGVPATSFPRVAVTAA-------GSARGSGR 127
            DG R         +   P RP  R R   L VP T+ P  A T         G  RG GR
Sbjct: 1150 DGPRRRGRKPTKAKRDGPPRPRGRPRIRPLEVPTTAGPASASTPTDGAKKPRGRGRGRGR 1209

Query: 128  EEETAGG 134
            + E AGG
Sbjct: 1210 KAEEAGG 1216


>gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo
           sapiens]
          Length = 239

 Score = 30.4 bits (67), Expect = 0.45
 Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 20/126 (15%)

Query: 28  VAGADVRLPEELGHI------RFWDSARHLGKPILQDLGQAAQL-----------LPADR 70
           +AG  +R PE +G +      R W+  +     + Q   ++ +L            P  R
Sbjct: 44  MAGLSLRSPEVVGRVASRARARTWEGGKEGHAAVPQPATRSGRLGVWGGPLRHSWAPRPR 103

Query: 71  QGAQALQDGGRHG-SGPHALPRARSPARPSPRSRLGVPATSFPRV--AVTAAGSARGSGR 127
           Q +Q    GG     GP   P  RS +R   R RL    +  P+   ++ AA + +   R
Sbjct: 104 QASQTRGGGGGPSLPGPAGRPSGRSRSRVGARGRLPSGGSHLPQPPRSLAAASAWQAVAR 163

Query: 128 EEETAG 133
           E   +G
Sbjct: 164 ELGLSG 169


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,083,188
Number of Sequences: 37866
Number of extensions: 324326
Number of successful extensions: 2050
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 139
Number of HSP's that attempted gapping in prelim test: 1887
Number of HSP's gapped (non-prelim): 298
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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