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Search of human proteins with 239742840
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742840 PREDICTED: hypothetical protein XP_002342659 [Homo
sapiens]
(118 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754265 PREDICTED: hypothetical protein [Homo sapiens] 237 2e-63
gi|239748803 PREDICTED: hypothetical protein [Homo sapiens] 237 2e-63
gi|239742840 PREDICTED: hypothetical protein XP_002342659 [Homo ... 237 2e-63
gi|239740823 PREDICTED: hypothetical protein XP_002344065 [Homo ... 237 2e-63
gi|239740720 PREDICTED: hypothetical protein [Homo sapiens] 237 2e-63
gi|239740670 PREDICTED: hypothetical protein [Homo sapiens] 237 2e-63
gi|239513936 PREDICTED: hypothetical protein [Homo sapiens] 237 2e-63
gi|239740894 PREDICTED: hypothetical protein [Homo sapiens] 233 3e-62
gi|239740771 PREDICTED: hypothetical protein [Homo sapiens] 233 3e-62
gi|239740643 PREDICTED: hypothetical protein [Homo sapiens] 233 3e-62
gi|239754209 PREDICTED: hypothetical protein [Homo sapiens] 111 1e-25
gi|239748740 PREDICTED: hypothetical protein [Homo sapiens] 111 1e-25
gi|156546992 zinc finger protein 214 [Homo sapiens] 29 0.70
gi|34878699 paired box protein 2 isoform a [Homo sapiens] 29 0.91
gi|34878703 paired box protein 2 isoform e [Homo sapiens] 29 0.91
gi|145309315 G protein-coupled receptor 62 [Homo sapiens] 28 1.2
gi|31542319 epsilon subunit of coatomer protein complex isoform ... 28 2.0
gi|40805825 epsilon subunit of coatomer protein complex isoform ... 28 2.0
gi|223941798 N-glycanase 1 isoform 2 [Homo sapiens] 27 3.5
gi|21314690 N-glycanase 1 isoform 1 [Homo sapiens] 27 3.5
gi|223941808 N-glycanase 1 isoform 4 [Homo sapiens] 27 3.5
gi|223941803 N-glycanase 1 isoform 3 [Homo sapiens] 27 3.5
gi|239748997 PREDICTED: hypothetical protein XP_002346878 [Homo ... 27 4.5
gi|239743019 PREDICTED: hypothetical protein XP_002342720 [Homo ... 27 4.5
gi|189491774 nephrocystin 1 isoform 2 [Homo sapiens] 27 4.5
gi|46397398 nephrocystin 1 isoform 1 [Homo sapiens] 27 4.5
gi|19743886 regulatory factor X4 isoform a [Homo sapiens] 26 5.9
gi|115292438 cementum protein 1 [Homo sapiens] 26 5.9
gi|15011898 regulatory factor X4 isoform b [Homo sapiens] 26 5.9
gi|47132527 regulatory factor X4 isoform c [Homo sapiens] 26 5.9
>gi|239754265 PREDICTED: hypothetical protein [Homo sapiens]
Length = 118
Score = 237 bits (604), Expect = 2e-63
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG 60
MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG
Sbjct: 1 MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG 60
Query: 61 LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 118
LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS
Sbjct: 61 LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 118
>gi|239748803 PREDICTED: hypothetical protein [Homo sapiens]
Length = 118
Score = 237 bits (604), Expect = 2e-63
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG 60
MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG
Sbjct: 1 MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG 60
Query: 61 LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 118
LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS
Sbjct: 61 LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 118
>gi|239742840 PREDICTED: hypothetical protein XP_002342659 [Homo
sapiens]
Length = 118
Score = 237 bits (604), Expect = 2e-63
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG 60
MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG
Sbjct: 1 MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG 60
Query: 61 LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 118
LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS
Sbjct: 61 LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 118
>gi|239740823 PREDICTED: hypothetical protein XP_002344065 [Homo
sapiens]
Length = 118
Score = 237 bits (604), Expect = 2e-63
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG 60
MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG
Sbjct: 1 MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG 60
Query: 61 LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 118
LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS
Sbjct: 61 LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 118
>gi|239740720 PREDICTED: hypothetical protein [Homo sapiens]
Length = 118
Score = 237 bits (604), Expect = 2e-63
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG 60
MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG
Sbjct: 1 MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG 60
Query: 61 LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 118
LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS
Sbjct: 61 LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 118
>gi|239740670 PREDICTED: hypothetical protein [Homo sapiens]
Length = 118
Score = 237 bits (604), Expect = 2e-63
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG 60
MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG
Sbjct: 1 MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG 60
Query: 61 LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 118
LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS
Sbjct: 61 LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 118
>gi|239513936 PREDICTED: hypothetical protein [Homo sapiens]
Length = 118
Score = 237 bits (604), Expect = 2e-63
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG 60
MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG
Sbjct: 1 MGDGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEG 60
Query: 61 LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 118
LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS
Sbjct: 61 LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 118
>gi|239740894 PREDICTED: hypothetical protein [Homo sapiens]
Length = 168
Score = 233 bits (593), Expect = 3e-62
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 3 DGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEGLP 62
DGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEGLP
Sbjct: 53 DGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEGLP 112
Query: 63 AEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 118
AEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS
Sbjct: 113 AEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 168
>gi|239740771 PREDICTED: hypothetical protein [Homo sapiens]
Length = 168
Score = 233 bits (593), Expect = 3e-62
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 3 DGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEGLP 62
DGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEGLP
Sbjct: 53 DGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEGLP 112
Query: 63 AEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 118
AEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS
Sbjct: 113 AEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 168
>gi|239740643 PREDICTED: hypothetical protein [Homo sapiens]
Length = 168
Score = 233 bits (593), Expect = 3e-62
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 3 DGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEGLP 62
DGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEGLP
Sbjct: 53 DGGSALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPVEEGLP 112
Query: 63 AEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 118
AEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS
Sbjct: 113 AEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVGVVSFRVRKQIS 168
>gi|239754209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 111 bits (278), Expect = 1e-25
Identities = 63/99 (63%), Positives = 73/99 (73%), Gaps = 1/99 (1%)
Query: 10 LLFGLLTEILLLFCG-GILVLLILRDEVVHVALSLGELHLVHALACVPVEEGLPAEHGSE 68
L+ LL L LF G G+LVLL+L +VVHVAL LGELHLVHALA VPV+EGL EHG E
Sbjct: 11 LVLALLLLELPLFVGRGVLVLLVLGHQVVHVALGLGELHLVHALARVPVQEGLAPEHGRE 70
Query: 69 LLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVG 107
LL DALE+LLDG A+A+EG HL+A DV G L +VG
Sbjct: 71 LLGDALEQLLDGRAVADEGGRHLQAAGRDVAHGRLHVVG 109
>gi|239748740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 111 bits (278), Expect = 1e-25
Identities = 63/99 (63%), Positives = 73/99 (73%), Gaps = 1/99 (1%)
Query: 10 LLFGLLTEILLLFCG-GILVLLILRDEVVHVALSLGELHLVHALACVPVEEGLPAEHGSE 68
L+ LL L LF G G+LVLL+L +VVHVAL LGELHLVHALA VPV+EGL EHG E
Sbjct: 11 LVLALLLLELPLFVGRGVLVLLVLGHQVVHVALGLGELHLVHALARVPVQEGLAPEHGRE 70
Query: 69 LLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDIVG 107
LL DALE+LLDG A+A+EG HL+A DV G L +VG
Sbjct: 71 LLGDALEQLLDGRAVADEGGRHLQAAGRDVAHGRLHVVG 109
>gi|156546992 zinc finger protein 214 [Homo sapiens]
Length = 606
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 45 ELHLVHALACVPVEEGLPAEHG----SELLRDALEELLDGC 81
E L+ + +PVEE LP G +LLRD++EE GC
Sbjct: 181 EQKLIVQHSYIPVEEALPQYVGVICQEDLLRDSMEEKYCGC 221
>gi|34878699 paired box protein 2 isoform a [Homo sapiens]
Length = 416
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 60 GLPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDG 101
G+P +G + RD +E D I G HL T DV++G
Sbjct: 192 GIPRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEG 233
>gi|34878703 paired box protein 2 isoform e [Homo sapiens]
Length = 431
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 60 GLPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDG 101
G+P +G + RD +E D I G HL T DV++G
Sbjct: 192 GIPRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEG 233
>gi|145309315 G protein-coupled receptor 62 [Homo sapiens]
Length = 368
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 7 ALGLLFGLLTEILLLFCGGILVLLILRDEVVHVALSLGELHLVHALACVPV 57
+LGL+ + E+ L G L++++LR + AL L L +V LA +
Sbjct: 15 SLGLILAAVVEVGALLGNGALLVVVLRTPGLRDALYLAHLCVVDLLAAASI 65
>gi|31542319 epsilon subunit of coatomer protein complex isoform a
[Homo sapiens]
Length = 308
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 66 GSELLRDA---LEELLDGCA-----IANEGDCHLEATRWDVTDGCL 103
G E L+DA +E+ D C+ + + CH+ RW+ +G L
Sbjct: 194 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLL 239
>gi|40805825 epsilon subunit of coatomer protein complex isoform b
[Homo sapiens]
Length = 257
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 66 GSELLRDA---LEELLDGCA-----IANEGDCHLEATRWDVTDGCL 103
G E L+DA +E+ D C+ + + CH+ RW+ +G L
Sbjct: 143 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLL 188
>gi|223941798 N-glycanase 1 isoform 2 [Homo sapiens]
Length = 636
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 28 VLLILRDEVVHVALSLGELHLVHALACVPVEEGLPAEHGSELLRDALEELLDGCAIANEG 87
+L +L+ + HV + ALAC+PV+E L + +L R +L G I++E
Sbjct: 171 ILEVLQSNIQHVLVYENPALQEKALACIPVQE-LKRKSQEKLSR--ARKLDKGINISDED 227
Query: 88 DCHLEATRW 96
LE W
Sbjct: 228 FLLLELLHW 236
>gi|21314690 N-glycanase 1 isoform 1 [Homo sapiens]
Length = 654
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 28 VLLILRDEVVHVALSLGELHLVHALACVPVEEGLPAEHGSELLRDALEELLDGCAIANEG 87
+L +L+ + HV + ALAC+PV+E L + +L R +L G I++E
Sbjct: 171 ILEVLQSNIQHVLVYENPALQEKALACIPVQE-LKRKSQEKLSR--ARKLDKGINISDED 227
Query: 88 DCHLEATRW 96
LE W
Sbjct: 228 FLLLELLHW 236
>gi|223941808 N-glycanase 1 isoform 4 [Homo sapiens]
Length = 558
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 28 VLLILRDEVVHVALSLGELHLVHALACVPVEEGLPAEHGSELLRDALEELLDGCAIANEG 87
+L +L+ + HV + ALAC+PV+E L + +L R +L G I++E
Sbjct: 171 ILEVLQSNIQHVLVYENPALQEKALACIPVQE-LKRKSQEKLSR--ARKLDKGINISDED 227
Query: 88 DCHLEATRW 96
LE W
Sbjct: 228 FLLLELLHW 236
>gi|223941803 N-glycanase 1 isoform 3 [Homo sapiens]
Length = 612
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 28 VLLILRDEVVHVALSLGELHLVHALACVPVEEGLPAEHGSELLRDALEELLDGCAIANEG 87
+L +L+ + HV + ALAC+PV+E L + +L R +L G I++E
Sbjct: 129 ILEVLQSNIQHVLVYENPALQEKALACIPVQE-LKRKSQEKLSR--ARKLDKGINISDED 185
Query: 88 DCHLEATRW 96
LE W
Sbjct: 186 FLLLELLHW 194
>gi|239748997 PREDICTED: hypothetical protein XP_002346878 [Homo
sapiens]
Length = 297
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 57 VEEG-LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDI 105
VEEG L E G + + ++ +G EGD H+E V +G L +
Sbjct: 162 VEEGDLQVEEGGLQVEEGSLQVEEGSLHVEEGDLHVEEGGLQVEEGTLHV 211
>gi|239743019 PREDICTED: hypothetical protein XP_002342720 [Homo
sapiens]
Length = 487
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 57 VEEG-LPAEHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTDGCLDI 105
VEEG L E G + + ++ +G EGD H+E V +G L +
Sbjct: 352 VEEGDLQVEEGGLQVEEGSLQVEEGSLHVEEGDLHVEEGGLQVEEGTLHV 401
>gi|189491774 nephrocystin 1 isoform 2 [Homo sapiens]
Length = 732
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 58 EEGLPA-EHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTD-GCLDIVGVVSF 111
EEG + E GSE +A++E DG + D H A + +++ G +V VSF
Sbjct: 214 EEGQESSEEGSEEDVEAVDETADGAEVKQRTDPHWSAVQKAISEAGIFCLVNHVSF 269
>gi|46397398 nephrocystin 1 isoform 1 [Homo sapiens]
Length = 733
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 58 EEGLPA-EHGSELLRDALEELLDGCAIANEGDCHLEATRWDVTD-GCLDIVGVVSF 111
EEG + E GSE +A++E DG + D H A + +++ G +V VSF
Sbjct: 214 EEGQESSEEGSEEDVEAVDETADGAEVKQRTDPHWSAVQKAISEAGIFCLVNHVSF 269
>gi|19743886 regulatory factor X4 isoform a [Homo sapiens]
Length = 641
Score = 26.2 bits (56), Expect = 5.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 31 ILRDEVVHVALSLGELHLVHAL 52
++RD +H A S G HL+H +
Sbjct: 344 VIRDMTLHSAPSFGSFHLIHLM 365
>gi|115292438 cementum protein 1 [Homo sapiens]
Length = 247
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 53 ACVPVEEGLPAEHGSELLRDALEELLDGCAIANEGDCHLEAT 94
A V E G+PA H S+ +R + LL A G C L +T
Sbjct: 58 AAVKAEVGIPAPHTSQEVRIHIRRLLSWAA---PGACGLRST 96
>gi|15011898 regulatory factor X4 isoform b [Homo sapiens]
Length = 563
Score = 26.2 bits (56), Expect = 5.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 31 ILRDEVVHVALSLGELHLVHAL 52
++RD +H A S G HL+H +
Sbjct: 447 VIRDMTLHSAPSFGSFHLIHLM 468
>gi|47132527 regulatory factor X4 isoform c [Homo sapiens]
Length = 735
Score = 26.2 bits (56), Expect = 5.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 31 ILRDEVVHVALSLGELHLVHAL 52
++RD +H A S G HL+H +
Sbjct: 438 VIRDMTLHSAPSFGSFHLIHLM 459
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.146 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,549,392
Number of Sequences: 37866
Number of extensions: 190042
Number of successful extensions: 483
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 36
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.