Guide to the Human Genome
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Name: LOC100294090 Sequence: fasta or formatted (168aa) NCBI GI: 239740643
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         10           1
 C cysteine            3.0          5           1
 D aspartate           6.0         10           1
 E glutamate           7.7         13           2
 F phenylalanine       3.0          5           1
 G glycine            12.5         21           2
 H histidine           3.0          5           1
 I isoleucine          4.8          8           1
 K lysine              2.4          4           2
 L leucine            16.1         27           3
 M methionine          1.2          2           1
 N asparagine          3.0          5           1
 P proline             2.4          4           1
 Q glutamine           2.4          4           2
 R arginine            6.5         11           1
 S serine              5.4          9           1
 T threonine           4.2          7           1
 V valine              7.7         13           2
 W tryptophan          2.4          4           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294500          1.000   PREDICTED: hypothetical protein 
LOC100294235          1.000   PREDICTED: hypothetical protein 
LOC100293488          0.652   PREDICTED: hypothetical protein 
LOC100287146          0.652   PREDICTED: hypothetical protein 
LOC100287146          0.652   PREDICTED: hypothetical protein XP_002342659 
LOC100294291          0.652   PREDICTED: hypothetical protein XP_002344065 
LOC100294202          0.652   PREDICTED: hypothetical protein 
LOC100294173          0.652   PREDICTED: hypothetical protein 
LOC100294123          0.652   PREDICTED: hypothetical protein 
LOC100133479          0.273   PREDICTED: hypothetical protein 
LOC100133479          0.273   PREDICTED: hypothetical protein 
GPR62                 0.016   G protein-coupled receptor 62 
ZNF214                0.013   zinc finger protein 214 
PAX2                  0.013   paired box protein 2 isoform a 
PAX2                  0.013   paired box protein 2 isoform e 
LOC100287171          0.009   PREDICTED: hypothetical protein XP_002342940 isofor...
LOC100287171          0.009   PREDICTED: hypothetical protein XP_002342939 isofor...
COPE                  0.009   epsilon subunit of coatomer protein complex isoform ...
COPE                  0.009   epsilon subunit of coatomer protein complex isoform ...
NGLY1                 0.006   N-glycanase 1 isoform 2 
NGLY1                 0.006   N-glycanase 1 isoform 1 
NGLY1                 0.006   N-glycanase 1 isoform 4 
NGLY1                 0.006   N-glycanase 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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