Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100294291 Sequence: fasta or formatted (118aa) NCBI GI: 239740823
Description:

PREDICTED: hypothetical protein XP_002344065

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6          9           1
 C cysteine            4.2          5           1
 D aspartate           6.8          8           1
 E glutamate           9.3         11           2
 F phenylalanine       2.5          3           1
 G glycine            11.9         14           2
 H histidine           4.2          5           1
 I isoleucine          5.1          6           1
 K lysine              0.8          1           1
 L leucine            21.2         25           3
 M methionine          0.8          1           1
 N asparagine          0.8          1           1
 P proline             1.7          2           1
 Q glutamine           0.8          1           1
 R arginine            4.2          5           1
 S serine              4.2          5           1
 T threonine           2.5          3           1
 V valine             10.2         12           2
 W tryptophan          0.8          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344065 
LOC100293488          1.000   PREDICTED: hypothetical protein 
LOC100287146          1.000   PREDICTED: hypothetical protein 
LOC100287146          1.000   PREDICTED: hypothetical protein XP_002342659 
LOC100294202          1.000   PREDICTED: hypothetical protein 
LOC100294173          1.000   PREDICTED: hypothetical protein 
LOC100294123          1.000   PREDICTED: hypothetical protein 
LOC100294500          0.981   PREDICTED: hypothetical protein 
LOC100294235          0.981   PREDICTED: hypothetical protein 
LOC100294090          0.981   PREDICTED: hypothetical protein 
LOC100133479          0.406   PREDICTED: hypothetical protein 
LOC100133479          0.406   PREDICTED: hypothetical protein 
ZNF214                0.019   zinc finger protein 214 
PAX2                  0.019   paired box protein 2 isoform a 
PAX2                  0.019   paired box protein 2 isoform e 
GPR62                 0.014   G protein-coupled receptor 62 
COPE                  0.014   epsilon subunit of coatomer protein complex isoform ...
COPE                  0.014   epsilon subunit of coatomer protein complex isoform ...
NGLY1                 0.009   N-glycanase 1 isoform 2 
NGLY1                 0.009   N-glycanase 1 isoform 1 
NGLY1                 0.009   N-glycanase 1 isoform 4 
NGLY1                 0.009   N-glycanase 1 isoform 3 
LOC100289979          0.009   PREDICTED: hypothetical protein XP_002346878 
LOC100289273          0.009   PREDICTED: hypothetical protein XP_002342720 
NPHP1                 0.009   nephrocystin 1 isoform 2 
NPHP1                 0.009   nephrocystin 1 isoform 1 
RFX4                  0.005   regulatory factor X4 isoform a 
CEMP1                 0.005   cementum protein 1 
RFX4                  0.005   regulatory factor X4 isoform b 
RFX4                  0.005   regulatory factor X4 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press